Faculty & Staff

James C. Gee, Ph.D.

faculty photo
Associate Professor of Radiologic Science in Radiology
Director, Penn Image Computing and Science Laboratory
Co-Director, HHMI-NIH Interfaces Program in Biomedical Imaging and Informational Sciences
Co-Director, Translational Biomedical Imaging Center
Department: Radiology

Contact information
3600 Market St. Suite 370
Philadelphia, PA 19104-2644
Office: 215-662-7109
Fax: 215-615-3681
Education:
B.S. (Electrical Engineering)
University of Washington, 1987.
B.S. (Computer Science)
University of Washington, 1987.
M.S. (Electrical Engineering)
University of Washington, 1989.
Ph.D. (Computer and Information Science)
University of Pennsylvania, 1996.
Post-Graduate Training
Visiting Scholar, Laboratoire des Signaux et Images en Medecine, Faculte de Medecine, Universite de Rennes I,Rennes, France, 1994-1995.
Postdoctoral Fellow in Neurology and Computer and Information Science, University of Pennsylvania, 1996-1997.
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Selected Publications

Massimo, L., Powers, C., Moore, P. N., Vesely, L., Avants, B. B., Gee, J. C., Libon, D. J., Grossman, M.: Neuroanatomy of apathy and disinhibition in frontotemporal lobar degeneration. Dementia and Geriatric Cognitive Disorders 27(1): 94-104, 2009.

Yushkevich, P. A., Avants, B. B., Pluta, J., Das, S. R., Minkoff, D., Mechanic-Hamilton, D., Glynn, S., Pickup, S., Liu, W., Gee, J. C., Grossman, M., Detre, J. A.: A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. NeuroImage 44(2): 385-398, 2009.

Tustison, N. J., Avants, B. B., Gee, J. C.: Directly manipulated free-form deformation image registration. IEEE Transactions on Image Processing 18(3): 624 - 635, 2009.

Das, S. R., Avants, B. B., Grossman, M., Gee, J. C.: Registration based cortical thickness measurement. NeuroImage 45(3): 867-879, 2009.

Pluta, J., Avants, B. B., Glynn, S., Awate, S. P., Gee, J. C., Detre, J. A.: Appearance and incomplete label matching for diffeomorphic template based hippocampus segmentation. Workshop on Computational Anatomy & Physiology of the Hippocampus, Medical Image Computing and Computer-Assisted Intervention Page: 105-116, 2008.

Song, Z., Awate, S. P., Gee, J. C.: Nonparametric Markov priors for tissue segmentation. IEEE International Symposium on Biomedical Imaging. Piscataway, NJ:IEEE Signal Processing Society, Page: 73-76, 2008.

Siqueira, M., Latecki, L. Jan., Tustison, N. J., Gallier, J., Gee, J. C.: Topological repairing of 3D digital images. Journal of Mathematical Imaging and Vision 30(3): 249-274, 2008.

Simon, T. J., Wu, Z., Avants, B. B., Zhang, H., Gee, J. C., Stebbins, G. T.: Atypical cortical connectivity and visuospatial cognitive impairments are related in children with chromosome 22q11.2 deletion syndrome. Behavioral and Brain Functions 4(25): 1-11, 2008.

Ramirez-Manzanares, A., Zhang, H., Rivera, M., Gee, J. C.: Robust regularization for the estimation of intra-voxel axon fiber orientations. Mathematical Methods in Biomedical Image Analysis. Los Alamitos, CA:IEEE Computer Society, Page: 1-8, 2008.

Ramirez-Manzanares, A., Cook, P. A., Gee, J. C.: A comparison of methods for recovering intra-voxel white matter fiber architecture from clinical diffusion imaging scans. Medical Image Computing and Computer-Assisted Intervention. Heidelberg:Springer-Verlag, LNCS 5241: 305-312, 2008.

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Last updated: 06/25/2009
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