Faculty & Staff

James C. Gee, Ph.D.

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Associate Professor of Radiologic Science in Radiology
Director, Penn Image Computing and Science Laboratory, Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
Co-Director, Translational Biomedical Imaging Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
Director, HHMI-NIBIB Interfaces Program in Biomedical Imaging and Informational Sciences, University of Pennsylvania, Philadelphia, PA
Director, Chinese Academy of Sciences - University of Pennsylvania Center of Excellence in Brain Mapping, University of Pennsylvania, Philadelphia, PA
Department: Radiology

Contact information
Richards - 6th Floor
3700 Hamilton Walk
Philadelphia, PA 19104-6116
Office: 215-746-6295
B.S. (Electrical Engineering)
University of Washington, 1987.
B.S. (Computer Science)
University of Washington, 1987.
M.S. (Electrical Engineering)
University of Washington, 1989.
Ph.D. (Computer and Information Science)
University of Pennsylvania, 1996.
Post-Graduate Training
Visiting Scholar, Laboratoire des Signaux et Images en Medecine, Faculte de Medecine, Universite de Rennes I,Rennes, France, 1994-1995.
Postdoctoral Fellow in Neurology and Computer and Information Science, University of Pennsylvania, 1996-1997.
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Selected Publications

Tustison, NJ, Shrinidhi, KL, Wintermark, M, Durst, CR, Kandel, BM, Gee, JC, Grossman, MC, Avants, BB: Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR. Neuroinformatics. Humana Press, Inc. 13(2): 209-225, November 2015.

Wu, J, Awate, SP, Licht, DJ, Clouchoux, C, DuPlessis, AJ, Avants, BB, Vossough, A, Gee, JC, Limperopoulos, C: Assessment of MRI-based automated fetal cerebral cortical folding measures in prediction of gestational age in the third trimester. American Journal of Neuroradilogy 36(7): 1369-1374, July 2015.

Ashtari, M, Zhang, H, Cook, PA, Cyckowski, LL, Shindler, KS, Marshall, KA, Aravand, P, Vossough, A, Gee, JC, Maguire, AM, Baker, CI, Bennett, J: Plasticity of the human visual system after retinal gene therapy in patients with Leber's congenital amaurosis. Science Translational Medicine 7(296): 296ra110, July 2015.

Zheng, Y, Keller, BM, Ray, S, Wang, Y, Conant, EF, Gee, JC, Kontos, D: Parenchymal texture analysis in digital mammography: A fully automated pipeline for breast cancer risk assessment. Medical Physics. AAPM-American Association of Physicists in Medicine, 42(7): 4921996, July 2015.

Kandel, B.M., Avants, B.,Gee, J.C.,Arnold, S.E.,Wolk, D.A. : Neuropsychological Testing Predicts Cerebrospinal Fluid Amyloid-β in Mild Cognitive Impairment Journal of Alzheimer's Disease 46(4): 901-912, June 2015.

Kandel, BM, Wang, DJJ, Gee, JC, Avants, BB: Eigenanatomy: Sparse dimensionality reduction for multi-modal medical image analysis. Methods 73: 43-53, February 2015.

Kandel, BM, Wang, DJJ, Detre, JA, Gee, JC, Avants, BB: Decomposing cerebral blood flow MRI into functional and structural components: A non-local approach based on prediction. NeuroImage. Academic Press, Inc. 105: 156-170, January 2015.

Xia, Q, Ni, J, Bosco, AJ, Kanpogninge, A, Gee, JC: Searchable public-key encryption with data sharing in dynamic groups for mobile cloud storage. Journal of Universal Computer Science 21(3): 440-453, 2015.

Azarion, AA, Wu, J, Davis, KA, Pearce, A, Krish, VT, Wagenaar,J, Chen W, Zheng, Y, Wang, H, Lucas, TH, Litt, B, Gee, JG: An open-source automated platform for three-dimensional visualization of subdural electrodes using CT-MRI coregistration. Epilepsia 55(12): 2028-2037, December 2014.

Powers, JP, Massimo, L, McMillan, CT, Yushkevich, PA, Zhang, H, Gee, JC, Grossman, M.: White matter disease contributes to apathy and disinhibition in behavioral variant frontotemporal dementia. Cognitive and Behavioral Neurology. Lippincott Williams and Wilkins, 27(4): 206-214, December 2014.

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Last updated: 07/26/2016
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