Junhyong Kim

faculty photo
Edmund J. and Louise W. Kahn Term Endowed Professor, University of Pennsylvania, Department of Biology
Co-Director, Penn Genome Frontiers Institute

Contact information
103H Lynch Life Sciences Building
Department of Biology
Philadelphia, PA 19104
Office: 215 746-5187
Fax: 215 898.8395
Graduate Group Affiliations
Education:
B.S.
Seoul National University, 1984.
PhD
SUNY at Stony Brook, 1992.
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Description of Research Expertise

Single cell genomics, systems biology of cell function, evolution of cell function, population genetics and phylogenetics

Description of Itmat Expertise

Dr. Kim's work involves statistical methods for functional and comparative genomics, laboratory investigations of single cell biology of mammalian cells, yeast transcriptome evolution, data analysis for next generation sequencing, and algorithm development for genetics and computational phylogenetics.

Selected Publications

Magwene, P. M., Lizardi, P., and J. Kim: Reconstructing the temporal order of biological samples using microarray data. Bioinformatics 19(7): 842-50, 2003.

Rifkin, S. A., J. Kim, and K. P. White: Evolution of gene-expression during metamorphosis in the Drosophila melanogaster subgroup. Nature Genetics 33(2): 138-44, 2003.

Rifin, S.A. and Kim, J.: Geometry of gene expression dynamics. Bioinformatics 18: 1176-83, 2002.

Kim, J. : Computers are from Mars, Organisms are from Venus: An interrelationship guide to Biology and Computer Science. IEEE Computer July 2002.

Aspnes, J., M.-Y. Kao, J. Kim. J. Kreychman, G. Shah: A Combinatorial Toolbox for Protein Landscapes in the Grand Canonical Model. J. Comp. Biol. 9(5): 721-42, 2002.

Kim, J. : Macroevolution of the hairy enhancer in Drosophila species. J. Exp. Zool. (Mol. Dev. Evol.) 291: 175-85, 2001.

Kim, J., E. Moriyama, C. G. Warr, P. J. Clyne, and J. R. Carlson: Identification of multi-transmembrane proteins from genomic databases using quasi-periodic structural properties. Bioinformatics 16: 767-75, 2000.

Kim, J: Slicing hyperdimensional oranges: The geometry of phylogenetic estimation Mol. Phyl. Evol. 17(1): 58-75, 2000.

Sanderson, M. J. and J. Kim: Parametric phylogeny estimation? Syst. Biol. 49: 817-29, 2000.

Kim, J., J. Kerr, and G.S. Min: Molecular heterochrony in the early development of Drosophila. PNAS 97: 212-16, 1999.

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Last updated: 12/05/2012
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