Selected Publications
Won, K. J., Ren, B., Wang, W.: Genome-wide prediction of transcription factor binding sites using an integrated model. Genome Biol 11(1): R7, 2010.
Won, K. J., Agarwal, S., Shen, L., Shoemaker, R., Ren, B., Wang, W.: An integrated approach to identifying cis-regulatory modules in the human genome. PLoS One 4(5): e5501, 2009.
Won, K. J., Sandelin, A., Marstrand, T. T., Krogh, A.: Modeling promoter grammars with evolving hidden Markov models. Bioinformatics 24(15): 1669-75, 2008.
Won, K. J., Chepelev, I., Ren, B., Wang, W.: Prediction of regulatory elements in mammalian genomes using chromatin signatures. BMC Bioinformatics 9: 547, 2008.
Won, K. J., Hamelryck, T., Prugel-Bennett, A., Krogh, A.: An evolutionary method for learning HMM structure: prediction of protein secondary structure. BMC Bioinformatics 8: 357, 2007.
Kyoung-Jae, Won, Prugel-Bennett, A., Krogh, A.: Evolving the structure of hidden Markov models. Evolutionary Computation, IEEE Transactions on 10(1): 39-49, 2006.
Won, K.-J., Marstrand T. T., and Krogh, A.: Modelling eukaryotic promoters with an evolving HMM method. 8th International Bioinformatics 2006 Conference 2006.
Won, K.-J., Hamelryck, T., Prugel-Bennett, a. and Krogh, A.: Evolving Hidden Markov Models for Protein Secondary Structure Prediction. IEEE Congress on Evolutionar Computation Page: 33-40, 2005.
Won, K.-J., Hamelryck, T., Prugel-Bennett, A., and Krogh, A.: A Protein Secondary Structure Prediction using evolved HMM. Young bioinformaticians' forum 2005.
Won, Kyoung-Jae, Prügel-Bennett, Adam, Krogh, Anders: The Block Hidden Markov Model for Biological Sequence Analysis. Springer Berlin / Heidelberg, 3213: 64-70, 2004.
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Last updated: 05/03/2011
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