Cell & Molecular Biology Graduate Group

image

CAMB Student Publications

CAMB Home » Recent CAMB Student Publications


A complete list of publications can be found here. The default view is the order of publications added; first to last. The list can be sorted by user.


  1. Kakrana A, Mathioni SM, Huang K, Hammond R, Vandivier L, Patel P, Arikit S, Shevchenko O, Harkess AE, Kingham B, Gregory BD, Leebens-Mack JH, Meyers BC. Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots. Genome Res. 2018 Jul 12. pii: gr.228163.117. doi: 10.1101/gr.228163.117.

  2. Syrett C, Sierra I, Berry CL, Beiting D, Anguera M. Sex-specific gene expression differences are evident in human embryonic stem cells and during in vitro differentiation of human placental progenitor cells. Stem Cells Dev. 2018 Jul 11. doi: 10.1089/scd.2018.81.

  3. Khetarpal SA, Babb PL, Zhao W, Hancock-Cerutti WF, Brown CD, Rader DJ, Voight BF. Multiplexed Targeted Resequencing Identifies Coding and Regulatory Variation Underlying Phenotypic Extremes of High-Density Lipoprotein Cholesterol in Humans. Circ Genom Precis Med. 2018 Jul;11(7):e002070. doi: 10.1161/CIRCGEN.117.2070.

  4. Shoshkes-Carmel M, Wang YJ, Wangensteen KJ, Tóth B, Kondo A, Massasa EE, Itzkovitz S, Kaestner KH. Author Correction: Subepithelial telocytes are an important source of Wnts that supports intestinal crypts. Nature. 2018 Jul 5. doi: 10.1038/s41586-018-0286-9.

  5. Schwartz GW, Petrovic J, Zhou Y, Faryabi RB. Differential Integration of Transcriptome and Proteome Identifies Pan-Cancer Prognostic Biomarkers. Front Genet. 2018 Jun 15;9:205. doi: 10.3389/fgene.2018.205. eCollection 2018.

  6. Li J, Byrne KT, Yan F, Yamazoe T, Chen Z, Baslan T, Richman LP, Lin JH, Sun YH, Rech AJ, Balli D, Hay CA, Sela Y, Merrell AJ, Liudahl SM, Gordon N, Norgard RJ, Yuan S, Yu S, Chao T, Ye S, Eisinger-Mathason TSK, et al. Tumor Cell-Intrinsic Factors Underlie Heterogeneity of Immune Cell Infiltration and Response to Immunotherapy. Immunity. 2018 Jun 23. pii: S1074-7613(18)30261-9. doi: 10.1016/j.immuni.2018.6.6.

  7. Freund-Brown J, Chirino L, Kambayashi T. Strategies to enhance NK cell function for the treatment of tumors and infections. Crit Rev Immunol. 2018;38(2):105-130. doi: 10.1615/CritRevImmunol.2018025248.

  8. Bart SM, Cohen C, Dye JM, Shorter J, Bates P. Enhancement of Ebola virus infection by seminal amyloid fibrils. Proc Natl Acad Sci U S A. 2018 Jun 25. pii: 201721646. doi: 10.1073/pnas.1721646115.

  9. Brocca-Cofano E, Xu C, Wetzel KS, Cottrell ML, Policicchio BB, Raehtz KD, Ma D, Dunsmore T, Haret-Richter GS, Musaitif K, Keele BF, Kashuba AD, Collman RG, Pandrea I, Apetrei C. Marginal Effects of Systemic CCR5 Blockade with Maraviroc on Oral Simian Immunodeficiency Virus Transmission to Infant Macaques. J Virol. 2018 Jun 20. pii: JVI.00576-18. doi: 10.1128/JVI.00576-18.

  10. Reichert M, Bakir B, Moreira L, Pitarresi JR, Feldmann K, Simon L, Suzuki K, Maddipati R, Rhim AD, Schlitter AM, Kriegsmann M, Weichert W, Wirth M, Schuck K, Schneider G, Saur D, Reynolds AB, Klein-Szanto AJ, Pehlivanoglu B, Memis B, Adsay NV, Rustgi AK. Regulation of Epithelial Plasticity Determines Metastatic Organotropism in Pancreatic Cancer. Dev Cell. 2018 Jun 18;45(6):696-711.e8. doi: 10.1016/j.devcel.2018.5.25.

  11. Aiello NM, Maddipati R, Norgard RJ, Balli D, Li J, Yuan S, Yamazoe T, Black T, Sahmoud A, Furth EE, Bar-Sagi D, Stanger BZ. EMT Subtype Influences Epithelial Plasticity and Mode of Cell Migration. Dev Cell. 2018 Jun 18;45(6):681-695.e4. doi: 10.1016/j.devcel.2018.5.27.

  12. Kugel CH 3rd, Douglass SM, Webster MR, Kaur A, Liu Q, Yin X, Weiss SA, Darvishian F, Al-Rohil RN, Ndoye A, Behera R, Alicea GM, Ecker BL, Fane M, Allegrezza MJ, Svoronos N, Kumar V, Wang DY, Somasundaram R, Hu-Lieskovan S, Ozgun A, Herlyn M, et al. Age Correlates with Response to Anti-PD1, Reflecting Age-Related Differences in Intratumoral Effector and Regulatory T-Cell Populations. Clin Cancer Res. 2018 Jun 13. doi: 10.1158/1078-0432.CCR-18-1116.

  13. Chen CY, Caporizzo MA, Bedi K, Vite A, Bogush AI, Robison P, Heffler JG, Salomon AK, Kelly NA, Babu A, Morley MP, Margulies KB, Prosser BL. Suppression of detyrosinated microtubules improves cardiomyocyte function in human heart failure. Nat Med. 2018 Jun 11. doi: 10.1038/s41591-018-0046-2.

  14. Liao CM, Mukherjee S, Tiyaboonchai A, Maguire JA, Cardenas-Diaz FL, French DL, Gadue P. GATA6 suppression enhances lung specification from human pluripotent stem cells. J Clin Invest. 2018 Jun 11. pii: 96539. doi: 10.1172/JCI96539.

  15. Kramer MC, Anderson SJ, Gregory BD. The nucleotides they are a-changin': function of RNA binding proteins in post-transcriptional messenger RNA editing and modification in Arabidopsis. Curr Opin Plant Biol. 2018 Jun 5;45(Pt A):88-95. doi: 10.1016/j.pbi.2018.5.10. Review.

  16. Sanchez DJ, Steger DJ, Skuli N, Bansal A, Simon MC. PPARγ is dispensable for clear cell renal cell carcinoma progression. Mol Metab. 2018 May 21. pii: S2212-8778(18)30439-3. doi: 10.1016/j.molmet.2018.5.13.

  17. Fisher DG, Coppock GM, López CB. Virus-derived immunostimulatory RNA induces type I IFN-dependent antibodies and T-cell responses during vaccination. Vaccine. 2018 Jun 27;36(28):4039-4045. doi: 10.1016/j.vaccine.2018.5.100. Epub 2018 May 31.

  18. Walton ZE, Patel CH, Brooks RC, Yu Y, Ibrahim-Hashim A, Riddle M, Porcu A, Jiang T, Ecker BL, Tameire F, Koumenis C, Weeraratna AT, Welsh DK, Gillies R, Alwine JC, Zhang L, Powell JD, Dang CV. Acid Suspends the Circadian Clock in Hypoxia through Inhibition of mTOR. Cell. 2018 May 23. pii: S0092-8674(18)30586-5. doi: 10.1016/j.cell.2018.5.9.

  19. Culyba MJ, Kubiak JM, Mo CY, Goulian M, Kohli RM. Non-equilibrium repressor binding kinetics link DNA damage dose to transcriptional timing within the SOS gene network. PLoS Genet. 2018 Jun 1;14(6):e1007405. doi: 10.1371/journal.pgen.1007405.

  20. Zhao YT, Kwon DY, Johnson BS, Fasolino M, Lamonica JM, Kim YJ, Zhao BS, He C, Vahedi G, Kim TH, Zhou Z. Long genes linked to autism spectrum disorders harbor broad enhancer-like chromatin domains. Genome Res. 2018 May 30. pii: gr.233775.117. doi: 10.1101/gr.233775.117.

  21. Rech AJ, Dada H, Kotzin JJ, Henao-Mejia J, Minn AJ, Twyman-Saint Victor C, Vonderheide RH. Radiotherapy and CD40 activation separately augment immunity to checkpoint blockade in cancer. Cancer Res. 2018 May 29. pii: canres.3821.2017. doi: 10.1158/0008-5472.CAN-17-3821.

  22. Giroux V, Stephan J, Chatterji P, Rhoades B, Wileyto EP, Klein-Szanto AJ, Lengner CJ, Hamilton KE, Rustgi AK. Mouse Intestinal Krt15+ Crypt Cells Are Radio-Resistant and Tumor Initiating. Stem Cell Reports. 2018 Jun 5;10(6):1947-1958. doi: 10.1016/j.stemcr.2018.4.22. Epub 2018 May 24.

  23. Cox LL, Cox TC, Moreno Uribe LM, Zhu Y, Richter CT, Nidey N, Standley JM, Deng M, Blue E, Chong JX, Yang Y, Carstens RP, Anand D, Lachke SA, Smith JD, Dorschner MO, Bedell B, Kirk E, Hing AV, Venselaar H, Valencia-Ramirez LC, Bamshad MJ, et al. Mutations in the Epithelial Cadherin-p120-Catenin Complex Cause Mendelian Non-Syndromic Cleft Lip with or without Cleft Palate. Am J Hum Genet. 2018 Jun 7;102(6):1143-1157. doi: 10.1016/j.ajhg.2018.4.9. Epub 2018 May 24.

  24. Bartow-McKenney C, Hannigan GD, Horwinski J, Hesketh P, Horan AD, Mehta S, Grice EA. The microbiota of traumatic, open fracture wounds is associated with mechanism of injury. Wound Repair Regen. 2018 May 26. doi: 10.1111/wrr.12642.

  25. Reizel Y, Sabag O, Skversky Y, Spiro A, Steinberg B, Bernstein D, Wang A, Kieckhaefer J, Li C, Pikarsky E, Levin-Klein R, Goren A, Rajewsky K, Kaestner KH, Cedar H. Postnatal DNA demethylation and its role in tissue maturation. Nat Commun. 2018 May 23;9(1):2040. doi: 10.1038/s41467-018-04456-6.

  26. Plenderleith LJ, Liu W, MacLean OA, Li Y, Loy DE, Sundararaman SA, Bibollet-Ruche F, Learn GH, Hahn BH, Sharp PM. Reply to Forni et al., "Multiple Selected Changes May Modulate the Molecular Interaction between Laverania RH5 and Primate Basigin". MBio. 2018 May 22;9(3). pii: e00917-18. doi: 10.1128/mBio.00917-18.

  27. Xin F, Fischer E, Krapp C, Krizman EN, Lan Y, Mesaros C, Snyder NW, Bansal A, Robinson MB, Simmons RA, Bartolomei MS. Mice exposed to bisphenol A exhibit depressive-like behavior with neurotransmitter and neuroactive steroid dysfunction. Horm Behav. 2018 May 12. pii: S0018-506X(18)30023-0. doi: 10.1016/j.yhbeh.2018.5.10.

  28. Liu W, Krump NA, MacDonald M, You J. Correction for Liu et al., "Merkel Cell Polyomavirus Infection of Animal Dermal Fibroblasts". J Virol. 2018 May 14;92(11). pii: e00476-18. doi: 10.1128/JVI.00476-18. Print 2018 Jun 1.

  29. Hill DA, Lim HW, Kim YH, Ho WY, Foong YH, Nelson VL, Nguyen HCB, Chegireddy K, Kim J, Habertheuer A, Vallabhajosyula P, Kambayashi T, Won KJ, Lazar MA. Distinct macrophage populations direct inflammatory versus physiological changes in adipose tissue. Proc Natl Acad Sci U S A. 2018 May 14. pii: 201802611. doi: 10.1073/pnas.1802611115.

  30. Himes BE, Obraztsova K, Lian L, Shumyatcher M, Rue R, Atochina-Vasserman EN, Hur SK, Bartolomei MS, Evans JF, Krymskaya VP. Rapamycin-independent IGF2 expression in Tsc2-null mouse embryo fibroblasts and human lymphangioleiomyomatosis cells. PLoS One. 2018 May 14;13(5):e0197105. doi: 10.1371/journal.pone.197105. eCollection 2018.

  31. Ochocki JD, Khare S, Hess M, Ackerman D, Qiu B, Daisak JI, Worth AJ, Lin N, Lee P, Xie H, Li B, Wubbenhorst B, Maguire TG, Nathanson KL, Alwine JC, Blair IA, Nissim I, Keith B, Simon MC. Arginase 2 Suppresses Renal Carcinoma Progression via Biosynthetic Cofactor Pyridoxal Phosphate Depletion and Increased Polyamine Toxicity. Cell Metab. 2018 May 4. pii: S1550-4131(18)30252-3. doi: 10.1016/j.cmet.2018.4.9.

  32. SanMiguel AJ, Meisel JS, Horwinski J, Zheng Q, Bradley CW, Grice EA. Antiseptic Agents Elicit Short-Term, Personalized and Body Site-Specific Shifts in Resident Skin Bacterial Communities. J Invest Dermatol. 2018 May 9. pii: S0022-202X(18)31959-6. doi: 10.1016/j.jid.2018.4.22.

  33. Pardi N, Hogan MJ, Naradikian MS, Parkhouse K, Cain DW, Jones L, Moody MA, Verkerke HP, Myles A, Willis E, LaBranche CC, Montefiori DC, Lobby JL, Saunders KO, Liao HX, Korber BT, Sutherland LL, Scearce RM, Hraber PT, Tombácz I, Muramatsu H, Ni H, et al. Nucleoside-modified mRNA vaccines induce potent T follicular helper and germinal center B cell responses. J Exp Med. 2018 May 8. pii: jem.20171450. doi: 10.1084/jem.20171450.

  34. Xin F, Smith LM, Susiarjo M, Bartolomei MS, Jepsen KJ. Endocrine-disrupting chemicals, epigenetics, and skeletal system dysfunction: exploration of links using bisphenol A as a model system. Environ Epigenet. 2018 Apr 26;4(2):dvy002. doi: 10.1093/eep/dvy002. eCollection 2018 Apr.

  35. Traxler EA, Thom CS, Yao Y, Paralkar V, Weiss MJ. Non-specific inhibition of erythropoiesis by short hairpin RNAs. Blood. 2018 May 4. pii: blood-2018-03-841304. doi: 10.1182/blood-2018-03-841304.

  36. Gallagher MD, Chen-Plotkin AS. The Post-GWAS Era: From Association to Function. Am J Hum Genet. 2018 May 3;102(5):717-730. doi: 10.1016/j.ajhg.2018.4.2. Review.

  37. Artap S, Manderfield LJ, Smith CL, Poleshko A, Aghajanian H, See K, Li L, Jain R, Epstein JA. Endocardial Hippo signaling regulates myocardial growth and cardiogenesis. Dev Biol. 2018 May 1. pii: S0012-1606(18)30191-X. doi: 10.1016/j.ydbio.2018.4.26.

  38. Fernandez RJ 3rd, Johnson FB. A regulatory loop connecting WNT signaling and telomere capping: possible therapeutic implications for dyskeratosis congenita. Ann N Y Acad Sci. 2018 Apr;1418(1):56-68. doi: 10.1111/nyas.13692. Review.

  39. Puré E, Blomberg R. Pro-tumorigenic roles of fibroblast activation protein in cancer: back to the basics. Oncogene. 2018 May 3. doi: 10.1038/s41388-018-0275-3. Review.

  40. Shoshkes-Carmel M, Wang YJ, Wangensteen KJ, Tóth B, Kondo A, Massassa EE, Itzkovitz S, Kaestner KH. Subepithelial telocytes are an important source of Wnts that supports intestinal crypts. Nature. 2018 May 2. doi: 10.1038/s41586-018-0084-4.

  41. Nguyen HG, Conn CS, Kye Y, Xue L, Forester CM, Cowan JE, Hsieh AC, Cunningham JT, Truillet C, Tameire F, Evans MJ, Evans CP, Yang JC, Hann B, Koumenis C, Walter P, Carroll PR, Ruggero D. Development of a stress response therapy targeting aggressive prostate cancer. Sci Transl Med. 2018 May 2;10(439). pii: eaar2036. doi: 10.1126/scitranslmed.aar2036.

  42. Razzoli M, Emmett MJ, Lazar MA, Bartolomucci A. β-Adrenergic receptors control brown adipose UCP-1 tone and cold response without affecting its circadian rhythmicity. FASEB J. 2018 May 1:fj201800452R. doi: 10.1096/fj.201800452R.

  43. Choi J, Lee K, Ingvarsdottir K, Bonasio R, Saraf A, Florens L, Washburn MP, Tadros S, Green MR, Busino L. Loss of KLHL6 promotes diffuse large B-cell lymphoma growth and survival by stabilizing the mRNA decay factor roquin2. Nat Cell Biol. 2018 May;20(5):586-596. doi: 10.1038/s41556-018-0084-5. Epub 2018 Apr 25.

  44. Child DD, Lee JH, Pascua CJ, Chen YH, Mas Monteys A, Davidson BL. Cardiac mTORC1 Dysregulation Impacts Stress Adaptation and Survival in Huntington's Disease. Cell Rep. 2018 Apr 24;23(4):1020-1033. doi: 10.1016/j.celrep.2018.3.117.

  45. Nemani N, Carvalho E, Tomar D, Dong Z, Ketschek A, Breves SL, Jaña F, Worth AM, Heffler J, Palaniappan P, Tripathi A, Subbiah R, Riitano MF, Seelam A, Manfred T, Itoh K, Meng S, Sesaki H, Craigen WJ, Rajan S, Shanmughapriya S, Caplan J, et al. MIRO-1 Determines Mitochondrial Shape Transition upon GPCR Activation and Ca(2+) Stress. Cell Rep. 2018 Apr 24;23(4):1005-1019. doi: 10.1016/j.celrep.2018.3.98.

  46. Liu L, Su X, Quinn WJ 3rd, Hui S, Krukenberg K, Frederick DW, Redpath P, Zhan L, Chellappa K, White E, Migaud M, Mitchison TJ, Baur JA, Rabinowitz JD. Quantitative Analysis of NAD Synthesis-Breakdown Fluxes. Cell Metab. 2018 Apr 20. pii: S1550-4131(18)30196-7. doi: 10.1016/j.cmet.2018.3.18.

  47. Ma Z, Taruno A, Ohmoto M, Jyotaki M, Lim JC, Miyazaki H, Niisato N, Marunaka Y, Lee RJ, Hoff H, Payne R, Demuro A, Parker I, Mitchell CH, Henao-Mejia J, Tanis JE, Matsumoto I, Tordoff MG, Foskett JK. CALHM3 Is Essential for Rapid Ion Channel-Mediated Purinergic Neurotransmission of GPCR-Mediated Tastes. Neuron. 2018 Apr 13. pii: S0896-6273(18)30249-6. doi: 10.1016/j.neuron.2018.3.43.

  48. Lee JV, Berry CT, Kim K, Sen P, Kim T, Carrer A, Trefely S, Zhao S, Fernandez S, Barney LE, Schwartz AD, Peyton SR, Snyder NW, Berger SL, Freedman BD, Wellen KE. Acetyl-CoA promotes glioblastoma cell adhesion and migration through Ca(2+)-NFAT signaling. Genes Dev. 2018 Apr 19. doi: 10.1101/gad.311027.117.

  49. Wetzel KS, Yi Y, Yadav A, Bauer AM, Bello EA, Romero DC, Bibollet-Ruche F, Hahn BH, Paiardini M, Silvestri G, Peeters M, Collman RG. Loss of CXCR6 coreceptor usage characterizes pathogenic lentiviruses. PLoS Pathog. 2018 Apr 16;14(4):e1007003. doi: 10.1371/journal.ppat.1007003.

  50. Buggert M, Nguyen S, McLane LM, Steblyanko M, Anikeeva N, Paquin-Proulx D, Del Rio Estrada PM, Ablanedo-Terrazas Y, Noyan K, Reuter MA, Demers K, Sandberg J, Eller MA, Streeck H, Jansson M, Nowak P, Sönnerborg A, Canaday DH, Naji A, Wherry EJ, Robb M, Dee Limited immune surveillance in lymphoid tissue by cytolytic CD4+ T cells during health and HIV disease. PLoS Pathog. 2018 Apr 13;14(4):e1006973. doi: 10.1371/journal.ppat.1006973.

  51. Sadeghi RS, Kulej K, Kathayat RS, Garcia BA, Dickinson BC, Brady DC, Witze E. Wnt5a signaling induced phosphorylation increases APT1 activity and promotes melanoma metastatic behavior. Elife. 2018 Apr 12;7. pii: e34362. doi: 10.7554/eLife.34362.

  52. Chatterji P, Rustgi AK. RNA Binding Proteins in Intestinal Epithelial Biology and Colorectal Cancer. Trends Mol Med. 2018 Apr 4. pii: S1471-4914(18)30054-6. doi: 10.1016/j.molmed.2018.3.8.

  53. Ritenour LE, Randall MP, Bosse KR, Diskin SJ. Genetic susceptibility to neuroblastoma: current knowledge and future directions. Cell Tissue Res. 2018 May;372(2):287-307. doi: 10.1007/s00441-018-2820-3. Epub 2018 Mar 27.

  54. June CH, O'Connor RS, Kawalekar OU, Ghassemi S, Milone MC. CAR T cell immunotherapy for human cancer. Science. 2018 Mar 23;359(6382):1361-1365. doi: 10.1126/science.aar6711. Review.

  55. Karakasheva TA, Dominguez GA, Hashimoto A, Lin EW, Chiu C, Sasser K, Lee JW, Beatty GL, Gabrilovich DI, Rustgi AK. CD38+ M-MDSC expansion characterizes a subset of advanced colorectal cancer patients. JCI Insight. 2018 Mar 22;3(6). pii: 97022. doi: 10.1172/jci.insight.97022.

  56. Haroon S, Li A, Weinert JL, Fritsch C, Ericson NG, Alexander-Floyd J, Braeckman BP, Haynes CM, Bielas JH, Gidalevitz T, Vermulst M. Multiple Molecular Mechanisms Rescue mtDNA Disease in C. elegans. Cell Rep. 2018 Mar 20;22(12):3115-3125. doi: 10.1016/j.celrep.2018.2.99.

  57. Loesche M, Farahi K, Capone K, Fakharzadeh S, Blauvelt A, Duffin KC, DePrimo SE, Muñoz-Elías EJ, Brodmerkel C, Dasgupta B, Chevrier M, Smith K, Horwinski J, Tyldsley A, Grice EA. Longitudinal study of the psoriasis-associated skin microbiome during therapy with ustekinumab in a randomized Phase 3b clinical trial. J Invest Dermatol. 2018 Mar 17. pii: S0022-202X(18)31731-7. doi: 10.1016/j.jid.2018.3.1501.

  58. Pancholi NJ, Weitzman MD. Serotype-specific restriction of wild-type adenoviruses by the cellular Mre11-Rad50-Nbs1 complex. Virology. 2018 Mar 13;518:221-231. doi: 10.1016/j.virol.2018.2.23.

  59. Acosta J, Wang W, Feldser DM. Off and back-on again: a tumor suppressor's tale. Oncogene. 2018 Mar 15. doi: 10.1038/s41388-018-0186-3.   Review.

  60. Das KK, Heeg S, Pitarresi JR, Reichert M, Bakir B, Takano S, Kopp JL, Wahl-Feuerstein A, Hicks P, Sander M, Rustgi AK. ETV5 regulates ductal morphogenesis with Sox9 and is critical for regeneration from pancreatitis. Dev Dyn. 2018 Mar 13. doi: 10.1002/dvdy.24626.

  61. SanMiguel JM, Abramowitz LK, Bartolomei MS. Imprinted gene dysregulation in a Tet1 null mouse model is stochastic and variable in the germline and offspring. Development. 2018 Mar 29;145(7). pii: dev160622. doi: 10.1242/dev.160622.

  62. Monteleon CL, Agnihotri T, Dahal A, Liu M, Rebecca VW, Beatty GL, Amavaradi RK, Ridky TW. Lysosomes support the degradation, signaling, and mitochondrial metabolism necessary for human epidermal differentiation. J Invest Dermatol. 2018 Mar 8. pii: S0022-202X(18)30216-1. doi: 10.1016/j.jid.2018.2.35.

  63. Rajbhandari P, Lopez G, Capdevila C, Salvatori B, Yu J, Rodriguez-Barrueco R, Martinez D, Yarmarkovich M, Weichert-Leahey N, Abraham BJ, Alvarez MJ, Iyer A, Harenza JL, Oldridge D, De Preter K, Koster J, Asgharzadeh S, Seeger RC, Wei JS, Khan J, Vandesomp Cross-cohort analysis identifies a TEAD4 ↔ MYCN positive-feedback loop as the core regulatory element of high-risk neuroblastoma. Cancer Discov. 2018 Mar 6. pii: CD-16-0861. doi: 10.1158/2159-8290.CD-16-0861.

  64. French RA, Samelson-Jones BJ, Niemeyer GP, Lothrop CD Jr, Merricks EP, Nichols TC, Arruda VR. Complete correction of hemophilia B phenotype by FIX-Padua skeletal muscle gene therapy in an inhibitor-prone dog model. Blood Adv. 2018 Mar 13;2(5):505-508. doi: 10.1182/bloodadvances.2017015313.

  65. Le Coz C, Trofa M, Syrett CM, Martin A, Jyonouchi H, Jyonouchi S, Anguera MC, Romberg N. CD40LG duplication-associated autoimmune disease is silenced by nonrandom X-chromosome inactivation. J Allergy Clin Immunol. 2018 Mar 2. pii: S0091-6749(18)30296-3. doi: 10.1016/j.jaci.2018.2.10.

  66. McDougald DS, Dine KE, Zezulin AU, Bennett J, Shindler KS. SIRT1 and NRF2 Gene Transfer Mediate Distinct Neuroprotective Effects Upon Retinal Ganglion Cell Survival and Function in Experimental Optic Neuritis. Invest Ophthalmol Vis Sci. 2018 Mar 1;59(3):1212-1220. doi: 10.1167/iovs.17-22972.

  67. Ye S, Lawlor MA, Rivera-Reyes A, Egolf S, Chor S, Pak K, Ciotti GE, Lee AC, Marino GE, Shah J, Niedzwicki D, Weber K, Park PMC, Alam MZ, Grazioli A, Haldar M, Xu M, Perry JA, Qi J, Eisinger-Mathason TSK. YAP1-Mediated Suppression of USP31 Enhances NFκB Activity to Promote Sarcomagenesis. Cancer Res. 2018 Feb 28. doi: 10.1158/0008-5472.CAN-17-4052.

  68. Yousefi M, Nakauka-Ddamba A, Berry CT, Li N, Schoenberger J, Simeonov KP, Cedeno RJ, Yu Z, Lengner CJ. Calorie Restriction Governs Intestinal Epithelial Regeneration through Cell-Autonomous Regulation of mTORC1 in Reserve Stem Cells. Stem Cell Reports. 2018 Mar 13;10(3):703-711. doi: 10.1016/j.stemcr.2018.1.26. Epub 2018 Mar 1.

  69. Loy DE, Rubel MA, Avitto AN, Liu W, Li Y, Learn GH, Ranciaro A, Mbunwe E, Fokunang C, Njamnshi AK, Sharp PM, Tishkoff SA, Hahn BH. Investigating zoonotic infection barriers to ape Plasmodium parasites using faecal DNA analysis. Int J Parasitol. 2018 Feb 21. pii: S0020-7519(18)30024-9. doi: 10.1016/j.ijpara.2017.12.2.

  70. Behera V, Evans P, Face CJ, Hamagami N, Sankaranarayanan L, Keller CA, Giardine B, Tan K, Hardison RC, Shi J, Blobel GA. Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility. Nat Commun. 2018 Feb 22;9(1):782. doi: 10.1038/s41467-018-03082-6.

  71. Cobey S, Gouma S, Parkhouse K, Chambers BS, Ertl HC, Schmader KE, Halpin RA, Lin X, Stockwell TB, Das SR, Landon E, Tesic V, Youngster I, Pinsky BA, Wentworth DE, Hensley SE, Grad YH. Poor immunogenicity, not vaccine strain egg adaptation, may explain the low H3N2 influenza vaccine effectiveness in 2012-13. Clin Infect Dis. 2018 Feb 20. doi: 10.1093/cid/ciy097.

  72. Freschi A, Hur SK, Valente FM, Ideraabdullah FY, Sparago A, Gentile MT, Oneglia A, Di Nucci D, Colucci-D'Amato L, Thorvaldsen JL, Bartolomei MS, Riccio A, Cerrato F. Tissue-specific and mosaic imprinting defects underlie opposite congenital growth disorders in mice. PLoS Genet. 2018 Feb 22;14(2):e1007243. doi: 10.1371/journal.pgen.1007243. eCollection 2018 Feb.

  73. SanMiguel JM, Bartolomei MS. DNA Methylation Dynamics of Genomic Imprinting in Mouse Development. Biol Reprod. 2018 Feb 15. doi: 10.1093/biolre/ioy036.

  74. Johnson KE, Voight BF. Patterns of shared signatures of recent positive selection across human populations. Nat Ecol Evol. 2018 Apr;2(4):713-720. doi: 10.1038/s41559-018-0478-6. Epub 2018 Feb 19.

  75. Verma P, Dilley RL, Gyparaki MT, Greenberg RA. Direct Quantitative Monitoring of Homology-Directed DNA Repair of Damaged Telomeres. Methods Enzymol. 2018;600:107-134. doi: 10.1016/bs.mie.2017.11.10. Epub 2018 Feb 1.

  76. Chen AI, Goulian M. A network of regulators promotes dehydration tolerance in Escherichia coli. Environ Microbiol. 2018 Mar;20(3):1283-1295. doi: 10.1111/1462-2920.14074. Epub 2018 Mar 14.

  77. Toor JS, Rao AA, McShan AC, Yarmarkovich M, Nerli S, Yamaguchi K, Madejska AA, Nguyen S, Tripathi S, Maris JM, Salama SR, Haussler D, Sgourakis NG. A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations. Front Immunol. 2018 Jan 30;9:99. doi: 10.3389/fimmu.2018.99. eCollection 2018.

  78. Lin-Shiao E, Lan Y, Coradin M, Anderson A, Donahue G, Simpson CL, Sen P, Saffie R, Busino L, Garcia BA, Berger SL, Capell BC. KMT2D regulates p63 target enhancers to coordinate epithelial homeostasis. Genes Dev. 2018 Jan 15;32(2):181-193. doi: 10.1101/gad.306241.117. Epub 2018 Feb 12.

  79. Kim YH, Marhon SA, Zhang Y, Steger DJ, Won KJ, Lazar MA. Rev-erbα dynamically modulates chromatin looping to control circadian gene transcription. Science. 2018 Mar 16;359(6381):1274-1277. doi: 10.1126/science.aao6891. Epub 2018 Feb 8.

  80. Duong TT, Vasireddy V, Ramachandran P, Herrera PS, Leo L, Merkel C, Bennett J, Mills JA. Use of induced pluripotent stem cell models to probe the pathogenesis of Choroideremia and to develop a potential treatment. Stem Cell Res. 2018 Mar;27:140-150. doi: 10.1016/j.scr.2018.1.9. Epub 2018 Jan 28.

  81. Xie H, Tang CA, Song JH, Mancuso A, Del Valle JR, Cao J, Xiang Y, Dang CV, Lan R, Sanchez DJ, Keith B, Hu CA, Simon MC. IRE1α RNase-dependent lipid homeostasis promotes survival in Myc-transformed cancers. J Clin Invest. 2018 Feb 26. pii: 95864. doi: 10.1172/JCI95864.

  82. Meisel JS, Sfyroera G, Bartow-McKenney C, Gimblet C, Bugayev J, Horwinski J, Kim B, Brestoff JR, Tyldsley AS, Zheng Q, Hodkinson BP, Artis D, Grice EA. Commensal microbiota modulate gene expression in the skin. Microbiome. 2018 Jan 30;6(1):20. doi: 10.1186/s40168-018-0404-9.

  83. Hinderer C, Katz N, Buza EL, Dyer C, Goode T, Bell P, Richman LK, Wilson JM. Severe Toxicity in Nonhuman Primates and Piglets Following High-Dose Intravenous Administration of an Adeno-Associated Virus Vector Expressing Human SMN. Hum Gene Ther. 2018 Feb 12. doi: 10.1089/hum.2018.15.

  84. Plenderleith LJ, Liu W, MacLean OA, Li Y, Loy DE, Sundararaman SA, Bibollet-Ruche F, Learn GH, Hahn BH, Sharp PM. Adaptive Evolution of RH5 in Ape Plasmodium species of the Laverania Subgenus. MBio. 2018 Jan 23;9(1). pii: e02237-17. doi: 10.1128/mBio.02237-17.

  85. Yzaguirre AD, Howell ED, Li Y, Liu Z, Speck NA. Runx1 is sufficient for blood cell formation from non-hemogenic endothelial cells in vivo only during early embryogenesis. Development. 2018 Jan 18. pii: dev.158162. doi: 10.1242/dev.158162.

  86. Klingberg F, Chau G, Walraven M, Boo S, Koehler A, Chow ML, Olsen AL, Im M, Lodyga M, Wells RG, White ES, Hinz B. The ED-A domain enhances the capacity of fibronectin to store latent TGF-β binding protein-1 in the fibroblast matrix. J Cell Sci. 2018 Jan 19. pii: jcs.201293. doi: 10.1242/jcs.201293.

  87. Palozola KC, Liu H, Nicetto D, Zaret KS. Low-Level, Global Transcription during Mitosis and Dynamic Gene Reactivation during Mitotic Exit. Cold Spring Harb Symp Quant Biol. 2018 Jan 18. pii: 034280. doi: 10.1101/sqb.2017.82.34280.

  88. Till JE, Yoon SS, Ryeom S. E-cadherin and K-ras: implications of a newly developed model of gastric cancer. Oncoscience. 2017 Nov 28;4(11-12):162-163. doi: 10.18632/oncoscience.379. eCollection 2017 Nov.

  89. Rech AJ, Balli D, Mantero A, Ishwaran H, Nathanson KL, Stanger BZ, Vonderheide RH. Tumor immunity and survival as a function of alternative neopeptides in human cancer. Cancer Immunol Res. 2018 Jan 16. pii: canimm.559.2017. doi: 10.1158/2326-6066.CIR-17-0559.

  90. Lin W, Li D, Cheng L, Li L, Liu F, Hand NJ, Epstein JA, Rader DJ. Zinc transporter Slc39a8 is essential for cardiac ventricular compaction. J Clin Invest. 2018 Jan 16. pii: 96993. doi: 10.1172/JCI96993.

  91. McIntosh BB, Pyrpassopoulos S, Holzbaur ELF, Ostap EM. Opposing Kinesin and Myosin-I Motors Drive Membrane Deformation and Tubulation along Engineered Cytoskeletal Networks. Curr Biol. 2018 Jan 22;28(2):236-248.e5. doi: 10.1016/j.cub.2017.12.7.

  92. Natale CA, Li J, Zhang J, Dahal A, Dentchev T, Stanger BZ, Ridky TW. Activation of G protein-coupled estrogen receptor signaling inhibits melanoma and improves response to immune checkpoint blockade. Elife. 2018 Jan 16;7. pii: e31770. doi: 10.7554/eLife.31770.

  93. Mizuno R, Chatterji P, Andres SF, Hamilton KE, Simon L, Foley SW, Jeganathan AN, Gregory BD, Madison BB, Rustgi AK. Differential Regulation of LET-7 by LIN28B Isoform-specific Functions. Mol Cancer Res. 2018 Jan 12. pii: molcanres.514.2017. doi: 10.1158/1541-7786.MCR-17-0514.

  94. Bellissimo DC, Speck NA. RUNX1 Mutations in Inherited and Sporadic Leukemia. Front Cell Dev Biol. 2017 Dec 20;5:111. doi: 10.3389/fcell.2017.111. eCollection 2017. Review.

  95. Pardi N, Hogan MJ, Porter FW, Weissman D. mRNA vaccines - a new era in vaccinology. Nat Rev Drug Discov. 2018 Jan 12. doi: 10.1038/nrd.2017.243. Review.

  96. Guedan S, Posey AD Jr., Shaw C, Wing A, Da T, Patel PR, McGettigan SE, Casado-Medrano V, Kawalekar OU, Uribe-Herranz M, Song D, Melenhorst JJ, Lacey SF, Scholler J, Keith B, Young RM, June CH. Enhancing CAR T cell persistence through ICOS and 4-1BB costimulation. JCI Insight. 2018 Jan 11;3(1). pii: 96976. doi: 10.1172/jci.insight.96976.

  97. Yuan X, Yang M, Chen X, Zhang X, Sukhadia S, Musolino N, Bao H, Chen T, Xu C, Wang Q, Santoro S, Ricklin D, Hu J, Lin R, Yang W, Li Z, Qin W, Zhao A, Scholler N, Coukos G. Correction to: Characterization of the first fully human anti-TEM1 scFv in models of solid tumor imaging and immunotoxin-based therapy. Cancer Immunol Immunother. 2018 Jan 8. doi: 10.1007/s00262-017-2101-0.

  98. Rosa JB, Metzstein MM, Ghabrial AS. An Ichor-dependent apical extracellular matrix regulates seamless tube shape and integrity. PLoS Genet. 2018 Jan 8;14(1):e1007146. doi: 10.1371/journal.pgen.1007146.

  99. Mucha BE, Hashiguchi M, Zinski J, Shore EM, Mullins MC. Variant BMP receptor mutations causing fibrodysplasia ossificans progressiva (FOP) in humans show BMP ligand-independent receptor activation in zebrafish. Bone. 2018 Jan 4. pii: S8756-3282(18)30002-4. doi: 10.1016/j.bone.2018.1.2.

  100. Tajer B, Mullins MC. Heterodimers reign in the embryo. Elife. 2017 Dec 27;6. pii: e33682. doi: 10.7554/eLife.33682.