Databases and General Protein Resources

• ExPASy General Protein Resources
• NCBI Protein Databases and Resources
• EBI European Bioinformatics Institute, General Protein Resources
• Pole Bio-Informatique Lyonnais General Protein Resources
• UniProt Universal Protein Resource
• PDB Protein Data Bank
• CHTSB Center for High-Throughput Structural Biology
• The Human Protein Atlas Tissue Specific Expression Profiles of Human Proteins
• UCSC Human Gene Sorter Exploring gene families and expression level
• BioGPS Gene expression level databases for various tissue 

Molecular Biology and Kinetics Tools

• ATCC General Bioresources
• Open Biosystems General Bioresources
• Tenua Kinetics Simulation Program

Crystallography and Molecular Visualization Software and Databases

• Data Processing and Structure Determination

  • MATTPROB Matthews Coefficient (Vm) Probability Calculation
  • HKL Research X-ray Data Processing
  • XDS/XSCALE X-ray Data Processing
  • SnB Direct-Methods Software Determination of Crystal Structures
  • SHELX Suite of Programs for Crystal Structure Determination
    
  • PHENIX Automated determination of macromolecular structures using X-ray crystallography
  • CCP4 Crystallography Software Suite
  • Coot Model Building, Validation and Refinement
  • PyMOL Molecular Visualization
  • SHARP/BUSTER - Structure Phasing Software
  • ARP/wARP - Automated Structure Building and Refinement
  • USF Uppsala Structural Biology Resources
• Crystallographic Databases

  • Anomalous Scattering X-ray Anomalous Scattering Resources
  • Heavy-Atom Databank Heavy Atom Derivatives Resources for the Solution of Protein Structures
  • Heavy Atom Reactivity Table Heavy Atom Reactivities with amino acids

Scientific Societies

• ASCB - America Society for Cell Biology
• Biophysical Society
• ACA - American Crystallographic Association

Protein Sequence and Structure Analysis

• Alignment

  • Clustal W Multiple Sequence Alignment
  • T-COFFEE Multiple Sequence Alignment
  • ESPript Multiple Sequence Alignment
  • Jalview Multiple Sequence Alignment Editor
• 2D-Structure Analysis

  • Jpred Sequence Analysis and Structure Prediction
  • HCA Hydrophobic Cluster Analysis
  • Coils Prediction of Coiled Coil
  • PairCoil2 Prediction of Coiled Coil
• 3D-Structure Analysis
• HHpred Homology Detection and Structure Predictions
• CATH Protein Structure Classification
• Dali - Protein Structure Analysis and Structural Homology Identication
• SSM Secondary Structure Matching and Protein Structure Comparison
• Phyre2 Protein Homology Recognition Engine
• Consurf  Analysis of Surface Conservation in Protein Structures
• PROMALS3D Structure-Based Sequence Alignment

Synchrotrons and Beamlines

• NSLS - National Synchrotron Light Source (Brookhaven, NY)
• CHESS Cornell High Energy Synchrotron Source (Ithaca, NY)
• APS Argonne National Laboratory (Chicago, Illinois)

  • BioCARS Bio-Consortium for the Advanced Radiation Source
  • IMCA-CAT Industrial Macromolecular Crystallography Associacion Collaborative Access Team
  • BioCAT - Biophysics Collaborative Access Team

X-ray Hardware and Crystallization Tools

• Bruker X-ray Detectors and X-ray Sources
  
• Hampton Research - Protein Crystallization
• P212121 - Protein crystallizatin tools & blog

Local links

• UPENN - University of Pensylvania
  
• Physilogy Department
• Pennsylvania Muscle Institute
• Cytoskeleton Journal Club
• Webmail

Granting Agencies

• NIH - National Institute of Health
• NSF - National Science Fundation
• AHA - American Heart Assiciation
• ACS - American Cancer Society