Databases and General
Protein Resources
- ExPASy
General Protein
Resources
- NCBI
Protein
Databases
and Resources
- EBI
European
Bioinformatics Institute, General
Protein
Resources
- Pole
Bio-Informatique
Lyonnais
General Protein
Resources
- PIR
Protein
Information Resource
- UniProt
Universal Protein Resource
- NDB
Nucleic Acid
Data
Base
- PDB
Protein Data Bank
- CCDC
Cambridge
Crystallographic Data Centre
- CHTSB
Center for High-Throughput Structural Biology
- The
Human Protein Atlas Tissue Specific Expression
Profiles of Human Proteins
Protein
Sequence
and Structure Analysis
- Alignment
- 2D-Structure
Analysis
- Jpred
Sequence Analysis and Structure Prediction
- HCA
Hydrophobic Cluster Analysis
- Coils
Prediction of Coiled Coil
- PairCoil2
Prediction of Coiled Coil
- 2ZIP
Prediction of Leucine Zippers
- DisEMBL
Prediction of Protein Disorder
- DISOPRED2
Prediction
of Protein Disorder
- FoldIndex
Folding Probability Analysis
- POPMUSIC
Prediction of Protein Mutation Stability Changes
- BH-search
Prediction of Potential Membrane Binding Sites
- IEDB
Analysis Antibody Epitope
Prediction
- 3D-Structure
Analysis
- Inub
3D-Fold Recognition Server
- CATH
Protein Structure Classification
- Dali
- Protein Structure Analysis and Structural Homology
Identication
- SSM
Secondary Structure Matching and Protein Structure
Comparison
- BMM
Biomolecular Modelling Software
- Phyre
Protein Homology Recognition Engine
- I-TASSER
Protein 3D Structure Prediction
- Secondary
Structure
Matching(SSM)
Comparing protein structures in 3D
- Consurf
Analysis of Surface Conservation in Protein
Structures
- SAXS/WAXS
- Ligand
Search
- ReLiBase
Search of Protein-Ligand Databases
Molecular
Biology and
Kinetics Tools
Crystallography and
Molecular
Visualization Software and Databases
- Data
Processing and Structure Determination
- HKL
Research X-ray Data Processing
- SnB
Direct-Methods Software Determination of Crystal
Structures
- Solve/Resolve
Automated Structure Solution for
MIR, SAD, and MAD
- SHARP/BUSTER
- Structure Phasing Software
- ARP/wARP
- Automated Structure Building and Refinement
- CCP4
Crystallography Software Suite
- CNS
Crystallography and NMR Suite
- SHELX
Suite of Programs for Crystal Structure
Determination
- CCMS
Determination and Analysis of Macromolecular
Structures
- USF
Uppsala Structural Biology Resources
- PHENIX
Automated determination of macromolecular structures
using X-ray
crystallography
- MATTPROB
Matthews Coefficient (Vm) Probability Calculation
- Graphics
- Coot
Model Building, Validation and Refinement
- O
Model Building
- Structure
Validation
- PROCHECK
Structure Validation Package
- WHAT
IF Molecular Modelling and
Structure Validation Package
- Structure
Visualization
- PyMOL
Molecular Visualization
- MOLSCRIPT
Molecular Visualization
- RASTER
3D Molecular Visualization
- GRASP
Molecular Surfaces and Electrostatics
Representations
- POV-Ray
Image Rendering and Three-Dimensional Illustrations
- Databases
Synchrotrons
and
Beamlines
- APS
Argonne
National Laboratory (Chicago, Illinois)
- BioCARS
Bio-Consortium
for the Advanced Radiation Source
- IMCA-CAT
Industrial
Macromolecular Crystallography Associacion
Collaborative Access Team
- BioCAT
- Biophysics Collaborative Access Team
- CHESS
Cornell
High Energy Synchrotron Source (Ithaca, NY)
- DESY
- Deutsches Elektronen-Synchrotron (Hamburg, Germany)
- NSLS
- National Synchrotron Light Source
(Brookhaven,
NY)
- ESRF
European
Synchrotron Radiation Facility (Grenoble, France)
- Spring-8
- (Harima, Japan)
- SRS
- Daresbury Synchrotron Radiation Source (Daresbury,
UK)
X-ray Hardware and
Crystallization Tools
Granting
Agencies
- NIH
- National Institute of Health
- NSF
- National Science Fundation
- AHA
- American Heart Assiciation
- March
of
Dimes
Scientific Societies
Misc
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