Penn Genomics Analysis Core

Commercial Softare

The Penn Molecular Profiling Group offers a number of excellent desktop sequencing analysis options for very reasonable licensing fees.

Free Software

ABI Peak Scanner
For visualization of genotyping / fragment sizing data generated by ABI Genetic Analyzers.
ABI Sequence Scanner
For visualization of sequencing data generated by ABI Genetic Analyzers.
Agilent Bioanalyzer Expert Software
For visualization of fragment sizing data generated by Agilent 2100 bioanalyzer.
For visualization of sequencing data.
Primer design program developed at MIT. Available through web interface, or as download.

Penn Genomics Analysis Core is an Abramson Cancer Center Shared Resource that is approved and partially funded by the National Cancer Institute.


Collection boxes have now been put in the lobby of BRB next to the UPS box and the 1st floor lobby of TRC (near the FEDEX box at the back).  Samples for DNA (Sanger) sequencing can be dropped off into the boxes.  Submission instructions and more information here.

Other Links