Course Synopses
REQUIRED COURSES
These courses are directed at Neuroscience graduate students for whom they are required.
They are intended to cover the basics of all of modern neuroscience.
Core I: BIOM 600: Cell Biology
This course covers basic biochemistry and surveys topics of cell biology
including: cell structure, compartmentalization and trafficking, signal
transduction, cytoskeleton, membranes and membrane transport. Offered
fall semester.
INSC 572 CORE II Electrical Language of Cells
This course introduces students to the high-speed electro-chemical signaling
mechanisms that occur in nerve and other excitable cells during normal
activity. Topics considered in substantial detail include: a) a basic
description of the passive and active membrane electrical properties;
b) the molecular architecture and functional role of ion channels in cell
signaling; c) the role of the calcium ion as an ubiquitous chemical messenger,
with applications to neuro-secretion; d) excitatory and inhibitory transmission
in the central nervous system; e) sensory transduction, as illustrated
by the visual, olfactory and auditory pathways. The course assumes a standard
background in cell biology, as well as basic concepts from college physics
and college calculus.
Course Directors: Phil Haydon: pghaydon@mail.med,
746-6788, Doug Coulter: coulterd@email.chop.edu,
590-1937
INSC 573 CORE III Systems and Integrative Neuroscience
This course provides an introduction to what is known about how neuronal circuits solve
problems for the organism and to current research approaches to this question. Topics
include: vision, audition, olfaction, motor systems, plasticity, and oscillations. In addition,
the course aims to provide an overview of the structure of the central nervous system. A
number of fundamental concepts are also discussed across topics, such as: lateral
inhibition, integration, filtering, frames of reference, error signals, adaptation. The course
format consists of lectures, discussions, readings of primary literature, supplemented by
textbook chapters and review articles.
Course Directors: Larry Palmer, palmerl@mail.med.upenn.edu 898-0992 and Diego Contreras, diegoc@mail.med.upenn.edu 573-8781
**********
Neuroscience students may place out of Core Courses I, II or III at the discretion of the
Academic Review Committee. Students from other graduate groups may take any of the
courses with permission of the section leaders.
**********
INSC 577 CORE IV Seminar-Related Journal Club
Neuroscience Journal Club
Faculty:
Spring
Jonathan Raper, raperj@mail.med.upenn.edu, phone 898-1037
Josh Gold, jigold@mail.med.upenn.edu, phone 746-0388
Fall
Rita Balice-Gordon, rbaliceg@mail.med.upenn.edu, phone 898-1037
Marcos Frank, mgf@mail.med.upenn.edu, phone 746-0388
Time / Location:
Monday, 3:30 – 5:00 pm, Barchi Library (Journal Club)
Wednesday, 4 – 5 pm, Barchi Library (INS seminar)
Course Description and Details
The goals of this weekly course are to learn how to read and critique research papers; to learn how to present a polished, professional summary of a recent paper, and to acquire some background information and context to more fully appreciate research seminars in the Wednesday INS seminar series.
Each Monday session will consist of two 20 minute presentations of a research paper related to that week’s Wednesday seminar, followed by student-led discussion. Each Wednesday session consists of attending the one hour formal INS seminar by faculty invited from other institutions to speak about their work, published and unpublished. Attendance at both the Monday and Wednesday sessions is required.
The first Journal Club session will be Monday, Jan 10th. Papers related to Dr. Eric Nestler's seminar on Wed., Jan. 12th will be presented. Assignments for subsequent journal clubs will also be made at this session. Papers are posted on the web at: http://www.med.upenn.edu/ins/events/JCPapersSpring05.html. Last name beginning with A – L should read the second paper listed on the website; M – Z should read the first paper. If there is a third paper listed, it is optional.
A faculty mentor will help you read and understand the papers and prepare a power point presentation. See additional guidelines for non-presenters and presenters below.
Guidelines for Monday Journal Club meetings
Non-presenters:
We ask that you spend a minimum of approximately 1 hour reading one of the speaker’s papers before we meet. To ensure that all of the papers are read by somebody, A-M will read the second paper, N – Z will read the first paper. In the event a single paper is listed, everyone should read that paper.
We ask that you bring to each Journal Club meeting 4 very brief paragraphs (each with a maximum of 3 non-run-on sentences) answering the following questions about the paper you read:
(a) What was the main take-home message of the paper?
(b) What part did you like best?
(c) What part did you find the least convincing or the most confusing? and (d) After reading the paper, what question would you ask the author?
Please no handwritten documents! These will be handed in at the start of the
JC, and, when appropriate, will be used as a basis for discussion. The first written summary will be turned in at the first session.
Presenters:
Please meet with your faculty mentor no later than one week prior to your Journal Club presentation to discuss which papers to present and determine who will present which papers. If you change the papers that will be presented and read by the class, you should notify all students and faculty no later than the preceding Monday, and send Josh and Jonathan a PDF of the paper.
Feel free to consult your mentor as necessary about the papers and your presentation. Coordinate your presentations with each other to make sure the appropriate background is presented without redundancy.
Your mentor should listen to a formal run-through of your presentation when both presenters are ready. Remember – schedule sessions with your faculty mentor in advance!!
Each presenter should plan a 20 minute presentation. The first presenter should add 5 minutes of general background information. Presentations should also include a discussion of potential future directions in which the work could be directed.
Each presenter will receive comments within a day or two of their presentations from the faculty mentor and either Josh or Jonathan.
Wednesday sessions
Everyone is encouraged to ask questions of the seminar speaker. These can be issues that were raised at the Journal Club, at lunch with the speaker, or in the seminar itself. After the seminar, you should discuss the content and format with each other, and we will generally discuss the seminar in the first few minutes of the following Journal Club.
In addition, there is the opportunity to have lunch with seminar speakers, from 12 -1 on Wednesday. These meetings are a chance to get to know the speaker, learn about their background, and get some insight into the way they approach their science. Each student should sign up for at least one lunch session this semester.
Evaluations
Students will receive written, e-mail feedback on their journal club presentation from the faculty mentor and Rita or Marcos. This feedback, as well as an evaluation of student write ups and participation in discussions will be incorporated into a final evaluation letter which will become part of your academic file. A satisfactory evaluation for a total of four semesters is needed to complete this NGG requirement.
ELECTIVES
INSC 574 (BE 526) Neuromorphing: Building Brains in Silicon (Spring
- odd)
Kwabena Boahen
We introduce neurobiologists to the physical constraints on neural computation---like
noise, wiring, and energy. We introduce engineers to the unrivaled performance
of biological systems---achieved despite physical constraints. And, we
study very large-scale models of entire neural systems; consisting of
thousands of silicon neurons that respond in real-time. These goals are
achieved through analytical (deriving mathematical solutions), computational
(simulating device and circuit behavior), and experimental (testing prefabricated
chips) exercises. Students work in multidisciplinary teams, combining
their expertise in neuroscience and neuroengineering; rudimentary knowledge
of one or the other is fine.
Prerequisites: Students with advanced knowledge in neurobiology
but rudimentary knowledge in electrical engineering or vice versa are
welcome. Biology students should have a course in Cellular Neurobiology
(e.g., BIOL251 or INSC572). A course in Systems Neuroscience (e.g., BIOL451
or INSC573) is recommended but not required. Engineering students should
have a course in Solid-State Circuits (e.g., EE319). A course in Integrated
Circuits (e.g., EE419, 560, or 562) is recommended but not required.
Goals: To model the structure and function of entire neural systems
in real-time using very large scale integration (VLSI) complementary metal-oxide-semiconductor
(CMOS) technology. To build these neuromorphic models, we proceed from
the device level, through the circuit level, to the system level. At the
device level, we show how electrodiffusion of electrons through transistor
channels parallels electrodiffusion of ions through membrane channels.
At the circuit level, we show how to implement synaptic interaction, dendritic
integration and active membrane behavior using transistors. At the system
level, we synthesize the spatiotemporal dynamics of the cochlea, the retina,
and networks of spiking neurons in cortex.
Instructor: Kwabena Boahen, Bioengineering Dept (boahen@seas.upenn.edu).
Textbooks: None required. But, the monograph, Analog VLSI and Neural
Systems, by Carver Mead, is a good introduction to VLSI. And the book,
From Neuron to Brain, by Kuffler, Nicholls and Martin, is a good introduction
to the brain.
Grading: Based on individual homeworks and team lab reports (groups
of two).
Target Audience: This course is intended to draw advanced students
from multiple disciplines with an interest in multidisciplinary approaches.
Students are encouraged to pool their expertise in different areas in
teams of two.
Topics:
Overview:
VLSI CMOS Technology: From Transistors to Chips
Systems Neuroscience: From Ion-Channels to Microcircuits
Electrodiffusion:
Ion-Channels: Electrodiffusion in Liquids
Transistors: Electrodiffusion in Solids Parallels between Ion-Channels
and Transistors
Synaptic Interaction:
Single-Transistor Gap Junctions Single-Transistor Chemical Synapses
Temporal and Spatial Integration:
Dendrites and Somas: Diode-Capacitor Dynamics Cell-Syncytium: Resistive
Networks
Active Membrane Properties:
Spike-Generation: Fast Na- and K-Channels Frequency-Adaptation: Ca-dependent
K-Channels
Spatiotemporal Dynamics:
Finite-Element Analog of Basilar Membrane and Cochlear Fluid Reciprocally-Connected
Two-Layer Model of Outer Retina
Sensory Neural Systems:
A Cochlea on a Chip; A Retina on a Chip
INSC 575 (BIOL 442) Neurobiology of Learning and Memory (Fall - every
year)
This course focuses on the current state of our knowledge about the neurobiological
basis of learning and memory. A combination of lectures and discussions
will explore the molecular and cellular basis of learning in invertebrates
and vertebrates from a behavioral and neural perspective.
Course Director: Ted Abel: abele@sas, 898-5614
INSC 576 (PHRM 550) Neuropsychopharmacology (Fall-every year)
Neuropsychopharmacology provides an oveview of the neurobiology of the major neuropsychiatric illnesses. The course is divided into four modules related to behavioral disorders or disciplines. The specific modules covered are: affective and anxiety disorders, substance abuse, schizophrenia, and fundamentals of stress neurobiology. Each module covers a specific area using the following format: 1) clinical features and overview, 2) basic and clinical neuroscience studies relevant to understanding the pathobiology of these disorders, 3) current treatment practices for each set of disorders; and 4) mechanisms of current treatment and future treatment needs. Each of the modules present material that integrates clinical and basic neurobiology approaches to research on these neuropsychiatric disorders to emphasize translational links between patient treatment and laboratory studies.
Course Director: Irwin Lucki (lucki@pharm.med,
573-3305)
INSC 578 (BIOL 488) Advanced topics in Behavioral Genetics (Spring -
even years)
This course focuses on the use of genetic techniques to study the molecular and cellular bases of
behavior. Particular emphasis will be given to the role of genetic approaches in understanding the
biological processes underlying learning, memory storage, circadian rhythms and drug abuse.
Reverse genetic approaches utilizing gene knockout and transgenic technology, and forward genetic
approaches using mutagenesis and quantitative genetic techniques will be discussed, as well as
application of these studies to different model organisms (fly, zebrafish, dog, mouse). Genetic
approaches to behavior and complex disease in humans will be illustrated with the series of lectures
on tauopathies, bipolar disorder and schizophrenia.
Course Format: This course meets once a week for three hours. Half of this time will be devoted
to a lecture that will provide a general overview of the topic to be discussed and the approaches used
in these studies. A discussion will follow the lecture. Discussions after the second and third lecture
will involve solving genetic problems. In subsequent lectures, the discussion will be based on
primary readings from the literature and will be led by students who have been given primary
responsibility for presenting these papers. All students are required to turn in one discussion
question for each paper at the beginning of each class to either Ted or Maja. These questions will
then be used to guide the discussion. It is critically important that everyone participates in the
discussion. We will be discussing cutting edge research that is often complex and controversial!
Course Directors: Amita Sehgal, amita@mail.med.upenn.edu ,
573-2985; 898-8780 (FAX) Maja Bucan: bucan@pobox,
898-0020; 573-2041 (FAX);
INSC 579 Advanced Synaptic Transmission (Fall - odd years)
This seminar course will involve critical reading and discussion of classic and modern
papers in synaptic physiology. Approximately half the time will be spent on the
neuromuscular junction, with the balance covering central synapses.
Prerequisites: Core II and III or permission of the instructors.
Course Directors: Tom Parsons: thd@vet,
221-2554
INSC 580 ( BE 519) Biophysical Neuronal Modeling (on demand)
The goal of the course is to introduce graduate and advanced undergraduate students to
the rapidly-growing field of computational neuroscience and, in particular, the cellular-level
modeling of neurons. Lectures focus on the theory and techniques used for simulating the
neurophysiology of single neurons by modeling their biophysical components in a realistic
fashion. Primary motivations for creating such models are to understand cellular-level and
neurophysiological data, generate new hypotheses for experimental inquiry and highlight
prominent gaps in the biological knowledge base. Laboratory time focuses upon developing
an intuition for how such models and their components behave as well as developing skill
at constructing models from scratch. After a series of progressively more complicated
tutorials and exercises, the course culminates in a final project where students apply the
theory and techniques to either reproduce pivotal results in the computational neuroscience
literature or to generate novel models of published experimental data.
Course Director: Leif Finkel: 898-0822
INSC 581 Auditory Neurobiology (Spring-even years)
The purpose of this course is to convey to upper level undergraduates and graduate
students the fundamental processes and mechanisms of the auditory system. The course
will develop ideas describing the structure and function of the peripheral and central
auditory pathway. The flow of acoustic energy will be analytically and quantitatively traced
through the peripheral ear. The details of auditory transduction will be explored as a
mechanical and electro-chemical process. Information transfer of simple and complex
acoustic signals in the central auditory pathway will be explored from the auditory nerve to
the cortex. In addition the pathophysiology of hearing due to excessive sound exposure
or ototoxic drug treatment will be considered. The data base utilized in the course will
come from primary literature describing the physiological mechanisms of hearing in animal
preparations. However, where appropriate the processes of human hearing will be
introduced.
Course Directors: Ginny Richards, richards@cattell.psych.upenn.edu, 8-0223 & Jim Saunders,saunderj@mail.med,
898-7504
INSC 582 Behavioral Neuropharmacology (PHRM 540, PSYC 605) (Fall - even years)
This course examines how behavioral studies influence current concepts of the
physiological roles of particular neurotransmitters in the brain.
-- animal models of neurological diseases
-- animal models of psychiatric illness
-- neurochemical mechanisms of psychotropic drugs
This course examines how behavioral studies influence current concepts of the
physiological roles of particular neurotransmitters in the brain.
-- animal models of neurological diseases
-- animal models of psychiatric illness
-- neurochemical mechanisms of psychotropic drugs
Course Director: Irwin Lucki: lucki@pharm.med,
573-3305
INSC 584 Neurobiology of Sleep and Circadian Rhythm (Spring - on demand)
The objectives of this course are to discuss and evaluate mechanisms controlling sleep and
circadian rhythm, to survey novel approaches to investigation in these areas, and to
indicate the clinical relevance of these ideas where possible. About half the course
consists of core lectures on basic rhythms, sleep, and their neural substrates. The rest of
the lectures are devoted to special topics which change from year to year.
Course Director: Allan Pack: pack@mail.med,
662-3302
INSC 587 Neurobiology of Disease (Spring - even years)
Textbook: There is no one text suitable for the course. Readings will be
assigned for each class and more in depth bibliographies will be developed
for each topic. Many of the chapters in "The Molecular and Genetic Basis
of Neurological Disease" edited by Roger Rosenberg, Stanley Pruisiner,
Salvatore DiMauro, and Robert Barchi, Edition 2, are a good initial source.
Copies are available on reserve in the medical library and in the
Neuroscience library.
Dysfunction of the human brain can produce a wide variety of neurological
and psychiatric illnesses. Over the past decades, neuroscientists have
begun to unravel the basic underlying mechanisms of a number of important
diseases of the nervous system, at the cellular, molecular and genetic
levels. None of these disorders are completely understood, and, perhaps
more importantly, none are yet susceptible to either total prevention or
cure, so these conditions remain among the most important health problems
of our society. This course is designed to familiarize neuroscientists
with basic information about a number of important neurological and
psychiatric diseases, focusing on a relatively brief clinical description
of the condition and a more in depth discussion of what is currently
understood about the basic pathobiology of the disorder.
The course is divided into two parts: On Tuesday afternoons there will be a
formal didactic teaching session. The first part of each lecture (one-half hour
to one hour) will be devoted to a discussion of the disease in question and
the second part will consist of one or two student presentations (in lieu
of a paper or exam) reviewing in depth one critical neuroscience component
of the disease. Each student will work with the course director or an
assigned
faculty member to develop her/his lecture. On Thursday afternoons, a
faculty member will present a research seminar or chalk talk describing the
research she or he is conducting in that particular disease. Papers will
be provided before the seminar so the students will be familiar with the
research. It is expected that having a research seminar given after the
introductory lecture will allow the students to become familiar in depth
with at least one approach to each disease.
Course Director: Marc Dichter: dichter@mail.med,
898-3130
INSC 589 Neuroendocrinology (Spring - odd years)
This course provides a multidisciplinary overview of neuroendocrine function. There are
no prerequisites for graduate students. The course has been specifically designed for
graduate students in Neuroscience, Pharmacology, Psychology, Psychiatry, Immunology,
and Pathology. It may also be of interest to other Ph.D. students, postdoctoral fellows, and
faculty interested in the interrelationships between the brain, neuroendocrine systems, and
behavior. For each topic there will be a lecture discussing the relevant physiology,
behavior and neuroendocrine mechanisms (cellular and molecular) followed by a journal
article discussion. Students will be evaluated by their discussion of current papers in the
literature. In addition, students will be expected to write and present a small grant proposal
in the field of neuroendocrinology.
TOPICS: 1) Overview of neuroendocrinology 2) Hypothalamic-pituitary-adrenal
axis 3) Thyroid function 4) Hypothalamic-pituitary-gonadal axis 5) Sexual
differentiation 6) Growth 7) Prolactin 8) Fluid Balance 9) Metabolism
and Ingestion
Course Director: Lori Flanagan-Cato (flanagan@cattell.psych,
898-4085)
INSC 592 (PSYC 604) Cognitive Neuroscience (Spring - even years)
INSC592 401 .50 c.u. Meets 1/9/06 through 2/24/06
INSC592 402 .50 c.u. Meets 2/27/06 through 4/21/06
Course Director for 401: Russell Epstein
Tel: 215-573-3532
Email: rae@cattell.psych.upenn.edu
Course Director for 402: Amishi Jha
Tel: 215-746-0425
Email: apjha@psych.upenn.edu
Overview:
Introduction to Cognitive Neuroscience. This course will review what has been learned about the neural mechanisms underlying intelligent behavior in humans and animals. The course will be organized by the traditional topic areas of cognitive science, specifically: Vision (early vision through object recognition), attention, learning and memory, motor control, planning and problem-solving, and language. Within each topic we will attempt to integrate the results of the different neuroscience approaches to each topic, including the study of human neurological patients, lesion studies in animals, single unit recordings, neural network modelling, and functional imaging techniques.
INSC 593 Structural Neurobiology (Spring - every year)
Course Director: Peter Crino, crinop@mail.med.upenn.edu 898-0178
Below I list the course goals. They sound straightforward, but they are
not. Realize that a map of the world down to the detail of your home street
spans a scale of about 10^6. But a map of the brain down to the level
of synaptic structure spans a scale of about 10^8! Thus the amount of
detail to consider is virtually unimaginable and we need strategies to
organize our structural studies. You might start by considering which
scale interests you most and what tools you might gain from this course
to tackle problems on that scale.
COURSE GOALS
(1) Learn the basic structural features of the vertebrate brain at several
levels of scale: macroscopic (gross = major subdivisions, major connecting
tracts), microscopic (histological organization of some regions of major
current interest, e.g., hippocampus, and ultrastructural (structure of
synapses, circuits).
(2) Learn to find your way around the brain using the various
available maps (atlases) at the corresponding levels of scale: (MRI, LM,
EM). This gets easy as you accomplish goal #1.
(3) Become proficient with light microscopy. LM is now a major
tool, not only for structure, but also for studies of function. In fact,
such distinctions are rapidly disappearing. Proficiency here involves:
a) understanding enough of the technical issues that you can obtain optimal
contrast and resolution; b) learning to "look" actively. This
involves asking a few basic questions as you examine a tissue. It is another
kind of learning how to find your way. We spend considerable time with
modern versions of LM, including fluorescence, confocal, DIC, 2-Photon).
In short, you should leave this course with a certain competence in neuroanatomy
(at all 3 scales), and with some competence as an investigator of "functional
architecture". To these ends, it will help to consider one of the
very biggest questions: Why aren't we smarter? There must be physical
limits to our intelligence, and to identify these structural constraints
would be to achieve some deep insight. Enough is known now about brain
structure at the scales mentioned to at least raise working hypotheses.
Prerequisites: at least one course on the nervous system (or permission of the course
director).
INSC 594 Computational Neuroscience and Neuroengineering (BE 520) (Spring
- every year)
This course surveys recent theoretical models of neural function. Students will be
introduced to the basic techniques of modelling and computer simulation. Topics will
include models of synaptic plasticity, neuronal processing and oscillations, and models of
various brain regions including cortex, thalamus, cerebellum, and hippocampus. Particular
emphasis will be placed on models of the visual system from development to perceptual
phenomena such as structure-from-motion, shape-from-shading, and stereopsis. Higher
level processes including cortical integration will be considered. Applied neural network
models of Hopfield, Sejnowski, and parallel distributed processing will also be presented.
Course Director: Leif Finkel, leif@sas.upenn.edu 898-1483
INSC 595 Behavioral Neuroscience (Fall - even years)
Current research on the neural basis of behavior is organized in six subsections:
animal communication, sex behavior, circadian rhythms, energy and water
balance, synaptic plasticity and learning, and addiction. Topics are selected
based on excitement surrounding recent research developments. Each topic
is analyzed initially at the behavioral level, followed by the systems and
the cell and molecular levels. Throughout the course, attention is paid
to the analysis interesting stereotyped behaviors, e.g., bird song, lordosis,
licking, whose description and neurology has provided insights into the
neural systems that contribute to overall neural control of behavior. Attention
is also paid to the development of understanding of the neuroanatomy of
selected neural systems.
Course Director: Harvey Grill: grill@cattell.psych,
898-7213
INSC 596 (PHRM 510) Neurochemistry/Neuropharmacology (Spring - every year)
COURSE DIRECTOR: Julie Blendy, blendy@pharm.med.upenn.edu 898-0730
SCHEDULE: M/W/F 1:00-2:00 P.M.
LOCATION: M100 John Morgan Building (Pharm. Library)
The goals of this course are:
A)To provide students with a general overview of the
biochemical properties of the nervous system
B) To provide students with in-depth information on particular
neurotransmitter and effector systems. Emphasis will be placed on the
wealth of new molecular information that is being gathered to examine
how cells of the nervous system function and communicate.
To achieve these goals the course is divided into 4 sections:
1) Overview of neuroanatomy and general neurochemistry
2) Specific neurotransmitters and neuromodulators
3) Molecular approaches to the study of signaling in the
CNS.
4) Current topics in neuropharmacology.
There will be 3 exams that roughly correlate with the first 3
sections. The fourth section will entail student presentations toward
the end of the semester.
INSC 597 Developmental Neurobiology (Fall - every year)
The goal of this course is to examine the principles underlying nervous system development. This is not a survey course in Developmental Neurobiology. Rather, the course will focus on selected topics, for which we will discuss the molecular and cellular strategies employed in different model organisms.
Topics: Formation of Neural Tissue; Specification of Neural Cell Types; Cell Migration; Synapse Formation.
Each week includes two 1.5 hrs classes, of which the first 30 minutes will consist of a faculty presented introduction/background to this class's topic. The background will vary with each topic, and rather than providing a comprehensive overview of the current field, will focus mostly on the biological principles . The introduction/background will be followed by a discussion of one paper. Each student must write two short grant-style proposals (approximately 2 pages each).
Each week includes two classes lectures and a small group discussion in which one or two important papers are analyzed in detail. Each student must write three short grant style reports (approximately 2 pages each). No exams are given.
Course Director: Michael Granato: granatom@mail.med.upenn.edu 898-2745
INSC 598 Advanced Systems Neuroscience (Fall - odd years)
Time: Monday and Friday from 10:30 – 12:30
Description:
This course takes an integrative approach to the study of nervous system function. We will explore neural strategies used by different modalities to encode sensory information. Information coding in these systems will be analyzed at different levels, ranging from synaptic input analysis at single sensory neurons and their effect on local network processing to larger scale population analyses. In a few of the systems, we will also explore how sensory information is transformed into motor commands that specify specific behaviors.
The course will consist of an introductory section to provide a conceptual framework for studying neural circuits at the systems level. This will be followed by four additional sections that each explores specific neural systems within the context of this conceptual framework. In the first section, Josh Gold and Vijay Balasubramanian will review general methodological and analytical approaches that are used to probe behavior and neural function at the systems level. These methodological and conceptual approaches will be described within the context of retinal processing as well as studies addressing the neural mechanisms responsible for forming decisions about sensory stimuli. In the second section, Diego Contreras will discuss sensory processing at the synaptic and local network level in two well described sensory systems (visual and somatosensory “barrel” cortex). In the third section, Marcos Frank will review the behavioral and electrophysiological features of REM and nonREM sleep, as well as several theories of sleep function, including the possible role of sleep in neuronal metabolism, brain development and learning and memory. In the fourth section, Minghong Ma will focus on the cellular and molecular mechanisms underlying olfactory information coding and processing. This section will address how these circuits are organized to enable us to detect and discriminate thousands of odors. In the fifth and final section, Marc Schmidt will use the well known neuroethological model of birdsong to explore the strengths of using natural behaviors to study fundamental properties of sensory processing, sensorimotor integration and motor control.
Format:
Each faculty will have approximately a 2 - 3 week block in which to cover their system. In each block, faculty will lecture on Mondays and Fridays. At the end of each block, students will present assigned papers. Lectures will be didactic, but interaction and questions from students are expected and encouraged. Grades will be determined from class participation and student presentations. Readings will consist mostly of scientific papers which will be available on blackboard in advance of each block by the corresponding faculty.
Prerequisite: Core III (INSC 573- Systems Neuroscience) or Permission of Course Director
Course Directors: Marc Schmidt at marcschm@sas.upenn.edu or Diego Contreras at diegoc@mail.med.upenn.edu
INSC599 Advanced Visual Neuroscience (Fall - even years)
MW 1:30-3:30, Some Fridays 1:30-2:30.
Room 326 C-Wing, 3401 Walnut Street.
Instructors: Profs. David Brainard (brainard@psych.upenn.edu) and Larry Palmer (palmerl@mail.med.upenn.edu)
First class: Monday September 13
Synopsis: This course is a graduate level seminar
focusing on modern visual neuroscience. The class
will contain of some overview lectures but the
focus will be discussion of selected papers. Topics
are likely to include phototransduction, signal
detection theory, retina, classical and recent views
of visual cortext, human visual areas, relation of
biological vision to the statistics of natural image,
information coding in the visual system, perception
and action, adaptation, and perceptual constancy.
INSC 616 Laboratory Computing (on demand)
This course is designed as a practical introduction to small computers with laboratory
applications in mind. Although software is emphasized, pertinent hardware is covered in
some detail. The class will meet for a two hour lecture once a week. Topics and assigned
problems will include machine language, assembly language, programming in C, the
interface between C and assembly language, operating systems interrupts, data acquisition
and graphics. The goal of the course is to bring basically naive students to a point of self-
sufficiency with laboratory computers. Course grade is based on weekly homeworks.
Enrollment is limited to 16.
Course Director: Larry Palmer palmerl@mail.med,
898-0992
INSC 618 Recovery After Neural Injury (Spring - odd years)
The human nervous system is subject to several types of injury, (traumatic,
ischemic, epileptic, demyelinating, and/or inflammatory, etc.) that cause
serious functional deficits. The mechanisms used by the central and peripheral
nervous systems for functional recovery from these injuries will be described
in this course. The molecular and cellular pathobiology of CNS injury
will be reviewed and methods to enhance functional recovery will be discussed
in detail. These include the limitation of secondary neuronal damage by
pharmacological manipulation (neuroprotection), the promotion of regeneration
and plasticity, the application of bioengineering strategies, and the
use of behavioral rehabilitative approaches.
Course Format: A combination of lecture, journal club style student presentations
and classroom discussion.
Course Directosr:
Robert Neumar
898-4960
and Frank Welsh
662-7925
INSC 630 Cognitive Neuroscience of Memory (on demand)
This course will review the neural mechanisms of learning and memory. Readings
will include both seminal and cutting-edge papers on topics ranging from
perceptual momory to higher order functions, including working memory,
declarative memory, implicit memory, skill learning, and semantic memory.
Within each topic we will attempt to integrate the results of different
neuroscience approaches, including the study of human neurological patients,
lesion studies and single unit recordings in animals, neural netowrk modeling,
event-related potentials, and functional imaging techniques. Each topic
will begin with an introductory overview lecture with an associated background
reading. The subsequent classes for each topic will consist of student-led
discussions as well as performance on other written assignments.he human
nervous system is subject to several types of injury, e.g. traumatic ischemic
demyelination, and inflamation, that cause serious functional deficits.
these injuries will be described in this course.
Course Directors: Sharon Thompson-Schill: 573-3533, thompson@psych.upenn.edu
and Amishi Jha: 573-0210, apjha@psych.upenn.edu
INSC 631 (PSYC 631) Cognitive Neuroscience of Affect (on demand)
We will survey, and as far as possible synthesize, three bodies of literature
on emotion and the brain, specifically: (1) neuroimaging and pharmacologic
studies of emotion and the normal human
brain; (2) the neuroscience of affective disorders in humans; and (3)
relevant studies of reinforcement and learning in animals. (Fulfills the
"Brain" requirement.)
Course Director: Martha Farah 573-3531, mfarah@cattell.psych.upenn.edu
INSC 632 (PSYC 632) Cognitive Neuroscience of Vision (on demand)
This course will review the neural basis of visual cognition. Emphasis
will be placed on linking cognitive theory to neuroscientific methods.
Topics will include object and face recognition, scene perception, visual
attention, mental imagery, and visual awareness.
Course Director: Russell Epstein 898-2958, rae@cattell.psych.upenn.edu
INSC 727 (PSYC 727) Electronics for Scientists (Spring - every year)
An introductory theory and practicum course covering the essential principles
and applications of electronics. Emphasis is on understanding basic electricity,
measurements, instrumentation, circuit simulation, data acquisition, and
computer control systems used in research environments.
Course Director: John Andrews-Labenski: 898-8092, jala@cattell.psych.upenn.edu
http://www.psych.upenn.edu/shop/psyc727
INSC 670: Current Topics in Neuropharmacology (PHRM 670)
Course Director: Jim Eberwine, eberwine@pharm.med.upenn.edu
Students critically review current topics in neuropharmacology literature, develop skills in oral presentation of scientific data and analysis of experimental results, and interact with faculty members working in fields associated with the topics discussed. The faculty members serve as experts in the areas discussed to provide perspectives or guide the discussions, but the emphasis is on efforts by the students. Typically, each session will employ a seminar format. The students are expected to critically read the designated papers and sufficient other references to place the paper in context, then clearly and critically present its results and conclusions and lead a round-table discussion with the other studetns. The course is designed to help students develop skills to independently and critically analyze scientific papers. Grading will depend on both the presentation of papers and the participation in class discussions.
|