Microarray references:

Selected Reviews

  • Hughes TR, Shoemaker DD. DNA microarrays for expression profiling. Curr Opin Chem Biol. 2001 Feb;5(1):21-5. Review. PMID: 11166643 [PubMed - indexed for MEDLINE]
  • Harkin DP. Uncovering functionally relevant signaling pathways using microarray-based expression profiling. Oncologist. 2000;5(6):501-7. Review. PMID: 11110602 [PubMed - indexed for MEDLINE]
  • Claverie JM. Computational methods for the identification of differential and coordinated gene expression. Hum Mol Genet. 1999;8(10):1821-32. Review. PMID: 10469833 [PubMed - indexed for MEDLINE]
  • Hoos A, Cordon-Cardo C. Tissue microarray profiling of cancer specimens and cell lines: opportunities and limitations. Lab Invest. 2001 Oct;81(10):1331-8. PMID: 11598146 [PubMed - in process]
  • Greenberg SA. DNA microarray gene expression analysis technology and its application to neurological disorders. Neurology. 2001 Sep 11;57(5):755-61. PMID: 11575306 [PubMed - in process]
  • Wu TD. Analysing gene expression data from DNA microarrays to identify candidate genes. J Pathol. 2001 Sep;195(1):53-65. PMID: 11568891 [PubMed - in process]
  • Schulze A, Downward J. Navigating gene expression using microarrays--a technology review. Nat Cell Biol. 2001 Aug;3(8):E190-5. Review. PMID: 11483980 [PubMed - indexed for MEDLINE]
  • Planet PJ, DeSalle R, Siddall M, Bael T, Sarkar IN, Stanley SE. Systematic analysis of DNA microarray data: ordering and interpreting patterns of gene expression. Genome Res. 2001 Jul;11(7):1149-55. Review. No abstract available. PMID: 11435396 [PubMed - indexed for MEDLINE]
  • Devaux F, Marc P, Jacq C. Transcriptomes, transcription activators and microarrays. FEBS Lett. 2001 Jun 8;498(2-3):140-4. Review. PMID: 11412845 [PubMed - indexed for MEDLINE]
  • Altman RB, Raychaudhuri S. Whole-genome expression analysis: challenges beyond clustering. Curr Opin Struct Biol. 2001 Jun;11(3):340-7. Review. PMID: 11406385 [PubMed - indexed for MEDLINE]
  • Quackenbush J. Computational analysis of microarray data. Nat Rev Genet. 2001 Jun;2(6):418-27. Review. PMID: 11389458 [PubMed - indexed for MEDLINE]
  • Blohm DH, Guiseppi-Elie A. New developments in microarray technology. Curr Opin Biotechnol. 2001 Feb;12(1):41-7. Review. PMID: 11167071 [PubMed - indexed for MEDLINE]
  • Hegde P, Qi R, Abernathy K, Gay C, Dharap S, Gaspard R, Hughes JE, Snesrud E, Lee N, Quackenbush J. A concise guide to cDNA microarray analysis. Biotechniques. 2000 Sep;29(3):548-50, 552-4, 556 passim. Review. PMID: 10997270 [PubMed - indexed for MEDLINE]
  • Nature Genetics Chipping Forecast, v21 supp 1999

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Data Analysis Reviews

  • Hess KR, Zhang W, Baggerly KA, Stivers DN, Coombes KR, Zhang W. Microarrays: handling the deluge of data and extracting reliable information. Trends Biotechnol. 2001 Nov;19(11):463-8. PMID: 11602311 [PubMed - in process]
  • Miles MF. Microarrays: lost in a storm of data? Nat Rev Neurosci. 2001 Jun;2(6):441-3. Review. PMID: 11389479 [PubMed - indexed for MEDLINE]
  • Becker KG. The sharing of cDNA microarray data. Nat Rev Neurosci. 2001 Jun;2(6):438-40. Review. PMID: 11389478 [PubMed - indexed for MEDLINE]
  • Geschwind DH. Sharing gene expression data: an array of options. Nat Rev Neurosci. 2001 Jun;2(6):435-8. Review. PMID: 11389477 [PubMed - indexed for MEDLINE]
  • Quackenbush J. Computational analysis of microarray data. Nat Rev Genet. 2001 Jun;2(6):418-27. Review. PMID: 11389458 [PubMed - indexed for MEDLINE]
  • Kerr MK, Churchill GA. Statistical design and the analysis of gene expression microarray data. Genet Res. 2001 Apr;77(2):123-8. Review. PMID: 11355567 [PubMed - indexed for MEDLINE]
  • Raychaudhuri S, Sutphin PD, Chang JT, Altman RB. Basic microarray analysis: grouping and feature reduction. Trends Biotechnol. 2001 May;19(5):189-93. Review. PMID: 11301132 [PubMed - indexed for MEDLINE]

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Sensitivity

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Amplification

  • Dent GW, O'Dell DM, Eberwine JH. Gene expression profiling in the amygdala: An approach to examine the molecular substrates of mammalian behavior. Physiol Behav. 2001 Aug;73(5):841-7. PMID: 11566217 [PubMed - in process]
  • Wang E, Miller LD, Ohnmacht GA, Liu ET, Marincola FM. High-fidelity mRNA amplification for gene profiling. Nat Biotechnol. 2000 Apr;18(4):457-9. PMID: 10748532 [PubMed - indexed for MEDLINE]
  • Kacharmina JE, Crino PB, Eberwine J. Preparation of cDNA from single cells and subcellular regions. Methods Enzymol. 1999;303:3-18. PMID: 10349635 [PubMed - indexed for MEDLINE]
  • Cheetham JE, Coleman PD, Chow N. Isolation of single immunohistochemically identified whole neuronal cell bodies from post-mortem human brain for simultaneous analysis of multiple gene expression. J Neurosci Methods. 1997 Nov 7;77(1):43-8. PMID: 9402555 [PubMed - indexed for MEDLINE]
  • Craig JC, Eberwine JH, Calvin JA, Wlodarczyk B, Bennett GD, Finnell RH. Developmental expression of morphoregulatory genes in the mouse embryo: an analytical approach using a novel technology. Biochem Mol Med. 1997 Apr;60(2):81-91. PMID: 9169087 [PubMed - indexed for MEDLINE]
  • Phillips J, Eberwine JH. Antisense RNA Amplification: A Linear Amplification Method for Analyzing the mRNA Population from Single Living Cells Methods. 1996 Dec;10(3):283-8. PMID: 8954839 [PubMed - as supplied by publisher]

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Laser capture microdissection and transcript profiling

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Last Updated on 9/3/03

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