medical scientist training program

md-phd program student publications as of june 2011

Plentz R, Park JS, Rhim AD, Abravanel D, Hezel AF, Sharma SV, Gurumurthy S, Deshpande V, Kenific C, Settleman J, Majumder PK, Stanger BZ and Bardeesy N, 2009, "Inhibition of gamma-secretase activity inhibits tumor progression in a mouse model of pancreatic ductal adenocarcinoma," Gastroenterology, 136:1741-1749.

Basu S, Mesaros C,  Gelhaus S, and  Blair IA, 2011, “Stable Isotope Labeling by Essential Nutrients in Cell Culture for Preparation of Labeled Coenzyme A and Its Thioesters,” Anal Chem 83(4), 1363–1369. PMCID: PMC3048769.

Puig A, McElligott S, Bergquist H, and Doshi JA 2010, "Albuterol and levalbuterol use and spending in Medicare beneficiaries with chronic obstructive pulmonary disease," Am J Geriatr Pharmacother., 8:571-582.

Brestoff JR, Perry IJ, and Van den Broeck J, 2011, “Challenging the role of social norms regarding body weight as an explanation for weight, height, and BMI misreporting biases: development and application of a new approach to examining misreporting and misclassification bias in surveys,” BMC Public Health, 11:331. PMCID: PMC3121629

Young M, Brown SES, Truog R, and Halpern SD, 2012, “Rationing in the intensive care unit: to disclose or disguise?,” Crit Care Med., 40(1):261-6.

Kandalaft LE, Motz GT, Busch J, and Coukos G, 2011, "Angiogenesis and the tumor vasculature as antitumor immune modulators: the role of vascular endothelial growth factor and endothelin," Curr Top Microbiol Immunol., 344:129-48.

Charlson E, Chen J, Custers-Allen R, Bittinger K, Li H, Sinha R, Hwang J, Bushman F, and Collman R, 2010, “Disordered microbial communities in the upper respiratory tract of cigarette smokers,”. PLoS One, Vol. 5. PMCID: PMC3004851

Yilmaz P, Kottmann R, Field D, Knight R, Cole J, Amaral-Zettler L, Gilbert J, Karsch-Mizrachi I, Johnston A, Cochrane G, Vaughan R, Hunter C, Park J, Morrison N, Rocca-Serra P, Sterk P, Arumugam M, Bailey M, Baumgartner L, Birren B, Blaser M, Bonazzi V, Booth T, Bork P, Bushman F, Buttigieg P, Chain P, Charlson E, Costello E, Huot-Creasy H, Dawyndt P, DeSantis T, Fierer N, Fuhrman J, Gallery R, Gevers D, Gibbs R, San Gil I, Gonzalez A, Gordon J, Guralnick R, Hankeln W, Highlander S, Hugenholtz P, Jansson J, Kau A, Kelley S, Kennedy J, Knights D, Koren O, Kuczynski J, Kyrpides N, Larsen R, Lauber CL, Legg T, Ley R, Lozupone C, Ludwig W, Lyons D, Maguire E, Methé B, Meyer F, Muegge B, Nakielny S, Nelson K, Nemergut D, Neufeld J, Newbold L, Oliver A, Pace N, Palanisamy G, Peplies J, Petrosino J, Proctor L, Pruesse E, Quast C, Raes J, Ratnasingham S, Ravel J, Relman D, Assunta-Sansone S, Schloss P, Schriml L, Sinha R, Smith MI, Sodergren E, Spo A, Stombaugh J, Tiedje J, Ward D, Weinstock G, Wendel D, White O, Whiteley A, Wilke A, Wortman J, Yatsunenko T, and Glöckner F, 2011, “Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications,” Nat Biotechnol. 5, 415-420.

Knights D, Kuczynski J, Charlson E, Zaneveld J, Mozer M, Collman R, Bushman F, Knight R, and Kelley S, 2011, “Bayesian community-wide culture-independent microbial source tracking,” Nature Methods. 8(9):761-3

Charlson E, Bittinger K, Haas A, Fitzgerald A, Frank I, Yadav A, Bushman F, and Collman R, 2011, “Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract,” Am J Respir Crit Care Med. 184(8):957-63. PMCID: PMC3208663

Sambandam A, Bell JJ, Schwarz BA, Zediak VP, Chi AW, Zlotoff DA, Krishnamoorthy SL, Burg JM and Bhandoola A, 2008, “Progenitor migration to the thymus and T cell lineage commitment,” Immunol. Res., 42(1-3):65-74.

Chi AW, Bell JJ, Zlotoff DA and Bhandoola A, 2009, “Untangling the T branch of the hematopoiesis tree,” Curr. Opin. Immunol., 21(2):121-6. (Review), PMCID: PMC2676219

Liu H*, Chi AW*, Arnett KL, Chiang MY, Xu L, Shestova O, Wang H, Li YM, Bhandoola A, Aster JC, Blacklow SC and Pear WS, 2010, “Notch dimerization is required for leukemogenesis and T-cell development,” Genes Dev., 24(21):2395-407. PMCID: PMC2964750. (* Co-first authors)

Mallory MJ, Jackson J, Weber B, Chi A, Heyd F and Lynch KW, 2011, “Signal- and development-dependent alternative splicing of LEF1 in T cells is controlled by CELF2,” Mol. Cell. Biol., 31(11):2184-95. PMCID: PMC3133246

Weber BN*, Chi AW*, Chavez A, Yashiro-Ohtani Y, Yang Q, Shestova O and Bhandoola A, 2011, “A critical role for TCF-1 in T-lineage specification and differentiation,” Nature, 476(7358):63-8. PMCID: PMC3156435. (* Co-first authors)

Chi AW, Chavez A, Xu L, Weber BN, Shestova O, Schaffer A, Wertheim G, Pear WS, Izon D and Bhandoola A, 2011, “Identification of Flt3+CD150– myeloid progenitors in adult mouse bone marrow that harbor T lymphoid developmental potential,” Blood, 118(10):2723-32. PMCID: PMC3172791

Chang J, Ciocca M, Kinjyo I, Palanivel V, McClurkin C, Dejong C, Mooney E, Kim J, Steinel N, Oliaro J, Yin C, Florea B, Overkleeft H, Berg L, Russell S, Koretzky G, Jordan M, and Reiner SL, 2011, “Asymmetric proteasome segregation as a mechanism for unequal partitioning of the transcription factor T-bet during T lymphocyte division,” Immunity, 34, 492-504. PMCID: PMC3088519

Hara T, Koh K, Combs DJ, and Sehgal A, 2011, "Post-Translational Regulation and Nuclear Entry of TIMELESS and PERIOD Are Affected in New timeless Mutant," J. Neurosci., 31(27):9982-90.  PMCID: PMC3139226

Crayton SH, Chen AK, Cheng Z, and Tsourkas A, 2010, "Molecular Imaging," (Book Chapter), Comprehensive Biomaterials, edited by Ducheyne P, Healy K, Hutmacher D, and Kirkpatrick J, Elsevier Inc.

Moise AR, Dominguez M, Alvarez S, Alvarez R, Schupp M, Cristancho AG, Kiser PD, de Lera AR, Lazar MA, and Palczewski K. 2008, “Stereospecificity of retinol saturase: absolute configuration, synthesis, and biological evaluation of dihydroretinoids,” J Am Chem Soc., 130(4):1154-5. PMCID: PMC2621334.

Lefterova MI, Zhang Y, Steger DJ, Schupp M, Schug J, Cristancho A, Feng D, Zhuo D, Stoeckert CJ Jr, Liu XS, and Lazar MA, 2008, “PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale,” Genes Dev., 22(21):2941-52. PMCID: PMC2577797. 

 Schupp M, Lefterova MI, Janke J, Leitner K, Cristancho AG, Mullican SE, Qatanani M, Szwergold N, Steger DJ, Curtin JC, Kim RJ, Suh MJ, Albert MR, Engeli S, Gudas LJ, and Lazar MA, 2009,  “Retinol saturase promotes adipogenesis and is downregulated in obesity,” Proc Natl Acad Sci U S A, 106(4):1105-10. PMCID: PMC2633572.

 Schupp M, Cristancho AG, Lefterova MI, Hanniman EA, Briggs ER, Steger DJ, Qatanani M, Curtin JC, Schug J, Ochsner SA, McKenna NJ, and Lazar MA 2009, “Re-expression of GATA2 cooperates with peroxisome proliferator-activated receptor-gamma depletion to revert the adipocyte phenotype,” J Biol Chem., 284(14):9458-64. PMCID: PMC2666598.

Cristancho AG, Schupp M, Lefterova MI, Cao S, Cohen DM, Chen CS, Steger DJ, and Lazar MA. “Transcriptional Repressor TCF7L1 Promotes Adipogenic Competency in Precursor Cells,” Proceedings of the National Academy of Sciences, 108(39):16271-6.  PMCID: PMC3182685

Cook DR*, Cross SA*, Soldan SS and Kolson DL, 2011, “NeuroAIDS as an inflammatory disorder,” (Book chapter), The Neurology of AIDS, 3rd Ed. (In press). (* Co-first authors)

Cook DR, Gleichman AJ, Cross SA, Doshi S, Ho W, Jordan-Sciutto KL, Lynch DR and Kolson DL, 2011, “N-Methyl-D-Aspartate Receptor Modulation by the Neuropeptide Apelin: Implications for HIV-Associated Excitotoxic Injury,” Journal of Neurochemistry, 118(6):1113-23. PMCID: PMC3166410

Jha S, Jones B, Coleman T, Steinmetz N, Law C, Griffin G, Hawk J, Dabbish N, Kalatsky V and Frank M, 2005, "Sleep-dependent plasticity requires cortical activity," J Neurosci., Vol. 25, 9266-74.

Chuang H, Raizen D, Lamb A, Dabbish N and Bau H, 2011, "Dielectrophoresis of Caenorhabditis elegans," Lab Chip, Vol. 11, 599-604.

Ashraf A, Gavenonis S, Daye D, Mies C, Feldman M, Rosen M and Kontos D, 2011, "A Multichannel Markov Random Field approach for Automated Segmentation of Breast Cancer Tumor in DCE-MRI Data Using Kinetic Observation Model,"(Conference Paper), Proceedings of the 14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) 2011: Lecture Notes in Computer Science (LNCS) (In press).

Daye D, Bobo E, Baumann B, Ioannou A, Conant E, Maidment A and Kontos D, 2011, " Mammographic parenchymal texture as an imaging marker of hormonal activity: a comparative study between pre- and post-menopausal women," (Conference Paper), Proceedings of SPIE Medical Imaging 2011: Computer-Aided Diagnosis, 7963:1N-58.

Dean T, and Sehgal A, 2009, "New routes for memory retrieval and reinforcement," Cell, 139, 225-7. 

 Wu MN, Joiner WJ, Dean T, Yue Z, Smith CJ, Chen D, Hoshi T, Sehgal A, and Koh K, 2010, "SLEEPLESS, a Ly-6/neurotoxin family memberregulates the levels, localization and activity of Shaker," Nat Neurosci., 13, 69-75.  PMCID:  PMC2842941

 Dean T, Xu R, Joiner W, Sehgal A, and Hoshi T, 2011, "Drosophila QVR/SSS modulates the activation and c-type inactivation kinetics of Shaker K+ channels," J Neurosci., 31, 11387-95. 

Tilton JC, Wilen CB, Didigu CA, Sinha R, Harrison JE, Agrawal-Gamse C, Henning EA, Bushman FD, Martin JN, Deeks SG and Doms RW, 2010, "A maraviroc-resistant HIV-1 with narrow cross-resistance to other CCR5 antagonists depends on both N-terminal and extracellular loop domains of drug-bound CCR5," Journal of Virology, 84:10863–10876 PMCID:  PMC2950574

Edmondson AC and Rader DJ, 2008,”Genome-Wide Approaches to Finding Novel Genes for Lipid Traits: the Start of a Long Road,” (Editorial), Circ Cardiovasc Genet., 1:3-6.

Keating BJ, Tischfield S, Murray SS, Bhangale T, Price TS, Glessner JT, Galver L, Barrett JC, Grant SF, Farlow DN, Chandrupatla HR, Hansen M, Ajmal S, Papanicolaou GJ, Guo Y, Li M, Derohannessian S, de Bakker PI, Bailey SD, Montpetit A, Edmondson AC, Taylor K, Gai X, Wang SS, Fornage M, Shaikh T, Groop L, Boehnke M, Hall AS, Hattersley AT, Frackelton E, Patterson N, Chiang CW, Kim CE, Fabsitz RR, Ouwehand W, Price AL, Munroe P, Caulfield M, Drake T, Boerwinkle E, Reich D, Whitehead AS, Cappola TP, Samani NJ, Lusis AJ, Schadt E, Wilson JG, Koenig W, McCarthy MI, Kathiresan S, Gabriel SB, Hakonarson H, Anand SS, Reilly M, Engert JC, Nickerson DA, Rader DJ, Hirschhorn JN, and Fitzgerald GA, 2008, “Concept, design and implementationofa cardiovascular gene-centric 50 k SNP array for large-scale genomic association studies,” PLoS One., 3(10):e3583. PMCID: PMC2571995

Edmondson AC, Brown RJ, Kathiresan S, Cupples LA, Demissie S, Manning AK, Jensen MK, Rimm EB, Wang J, Rodrigues A, Bamba V, Khetarpal SA, Wolfe ML, DerOhannessian S, Li M, Reilly MP, Aberle J, Evans D, Hegele RA, and Rader DJ 2009, “Loss-of-function variants in endothelial lipase are a cause of elevated HDL cholesterol in humans,” J Clin Invest., 119:1042-50. PMCID: PMC2662558

Jensen MK, Rimm EB, Mukamal KJ, Edmondson AC,  Rader DJ, Vogel U, Tjonneland A, Sorensen TI, Schmidt EB, and Overvad K,2009, “The T111I variant in the endothelial lipase gene and risk of coronary heart disease in three independent populations,” Eur Heart J., 30:1584-1589. PMCID: PMC2733737

Brown RJ, Edmondson AC, Griffon N, Hill TB, Fuki IV, Badellino KO, Li M, Wolfe ML, Reilly MP, and Rader DJ 2009, “A naturally occurring variant of endothelial lipase associated with elevated HDL exhibits impaired synthesis,” J Lipid Res, 50:1910-1916. PMCID: PMC2724790

Teslovich TM, Musunuru K, Smith AV, Edmondson AC, Stylianou IM, Koseki M, Pirruccello JP, Ripatti S, Chasman DI, Willer CJ, Johansen CT, Fouchier SW, Isaacs A, Peloso GM, Barbalic M, Ricketts SL, Bis JC, Aulchenko YS, Thorleifsson G, Feitosa MF, Chambers J, Orho-Melander M, Melander O, Johnson T, Li X, Guo X, Li M, Shin Cho Y, Jin Go M, Jin Kim Y, Lee JY, Park T, Kim K, Sim X, Twee-Hee Ong R, Croteau-Chonka DC, Lange LA, Smith JD, Song K, Hua Zhao J, Yuan X, Luan J, Lamina C, Ziegler A, Zhang W, Zee RY, Wright AF, Witteman JC, Wilson JF, Willemsen G, Wichmann HE, Whitfield JB, Waterworth DM, Wareham NJ, Waeber G, Vollenweider P, Voight BF, Vitart V, Uitterlinden AG, Uda M, Tuomilehto J, Thompson JR, Tanaka T, Surakka I, Stringham HM, Spector TD, Soranzo N, Smit JH, Sinisalo J, Silander K, Sijbrands EJ, Scuteri A, Scott J, Schlessinger D, Sanna S, Salomaa V, Saharinen J, Sabatti C, Ruokonen A, Rudan I, Rose LM, Roberts R, Rieder M, Psaty BM, Pramstaller PP, Pichler I, Perola M, Penninx BW, Pedersen NL, Pattaro C, Parker AN, Pare G, Oostra BA, O'Donnell CJ, Nieminen MS, Nickerson DA, Montgomery GW, Meitinger T, McPherson R, McCarthy MI, McArdle W, Masson D, Martin NG, Marroni F, Mangino M, Magnusson PK, Lucas G, Luben R, Loos RJ, Lokki ML, Lettre G, Langenberg C, Launer LJ, Lakatta EG, Laaksonen R, Kyvik KO, Kronenberg F, König IR, Khaw KT, Kaprio J, Kaplan LM, Johansson A, Jarvelin MR, Cecile J W Janssens A, Ingelsson E, Igl W, Kees Hovingh G, Hottenga JJ, Hofman A, Hicks AA, Hengstenberg C, Heid IM, Hayward C, Havulinna AS, Hastie ND, Harris TB, Haritunians T, Hall AS, Gyllensten U, Guiducci C, Groop LC, Gonzalez E, Gieger C, Freimer NB, Ferrucci L, Erdmann J, Elliott P, Ejebe KG, Döring A, Dominiczak AF, Demissie S, Deloukas P, de Geus EJ, de Faire U, Crawford G, Collins FS, Chen YD, Caulfield MJ, Campbell H, Burtt NP, Bonnycastle LL, Boomsma DI, Boekholdt SM, Bergman RN, Barroso I, Bandinelli S, Ballantyne CM, Assimes TL, Quertermous T, Altshuler D, Seielstad M, Wong TY, Tai ES, Feranil AB, Kuzawa CW, Adair LS, Taylor HA Jr, Borecki IB, Gabriel SB, Wilson JG, Holm H, Thorsteinsdottir U, Gudnason V, Krauss RM, Mohlke KL, Ordovas JM, Munroe PB, Kooner JS, Tall AR, Hegele RA, Kastelein JJ, Schadt EE, Rotter JI, Boerwinkle E, Strachan DP, Mooser V, Stefansson K, Reilly MP, Samani NJ, Schunkert H, Cupples LA, Sandhu MS, Ridker PM, Rader DJ, van Duijn CM, Peltonen L, Abecasis GR, Boehnke M, and Kathiresan S, 2010, “Biological, clinical and population relevance of 95 loci for blood lipids,” Nature, 466:707-713. PMCID: PMC3039276

He J, Wang K, Edmondson AC, Rader DJ, Li C, and Li M, 2011, “Gene-based Interaction Analysis by Incorporating External Linkage Disequilibrium Information,” Eur J Hum Genet., 19:164-172. PMCID: PMC3025792

Edmondson AC, Braund PS, Stylianou IM, Khera AV, Nelson CP, Wolfe ML, DerOhannessian SL, Keating BJ, Qu L, He J, Tobin MD,Tomaszewski M, Baumert J, Klopp N, Döring A, Thorand B, Li M, Reilly MP, Koenig W, Samani NJ and Rader DJ, 2011, “Dense genotyping of candidate gene loci identifies variants associated with high-density lipoprotein cholesterol,” Circ Cardiovasc Genet., 4:145-155.

He J, Li H, Edmondson AC, Rader DJ and Li M, “A Gaussian Copula Approach for the Analysis of Secondary Phenotypes in Case-Control Genetic Association Studies," Biostatistics, 4(2):145-55.

Wang K, Edmondson AC, Li M, Wilensky R, Matthai W, Qasim A, Daveney J, Burnett MS, Pichard AD, Kent KM, Satler L, Lindsay JM, Waksman R, Knouff CW, Waterworth DM, Walker MC, Mooser V, Epstein SE, Grant SF, Reilly MP, Hakonarson H, and Rader DJ, “Pathway-wide association studies implicate multiple sterol transport and metabolism genes in regulating HDL cholesterol levels,” Front Applied Genet Epidemiology, (in press). PMC Journal in process.

Schelleman H, Brensinger CM, Chen J, Finkelman BS, Rieder MJ, and Kimmel SE, 2010, "New genetic variant that might improve warfarin dose prediction in African Americans," Br J Clin Pharmacol, 70(3):393-9. PMCID: PMC2949912

 Finkelman BS, Gage BF, Johnson JA, Brensinger CM, and Kimmel SE, 2011, "Genetic Warfarin Dosing: Tables vs. Algorithms," J Am Coll Cardiol., 57(5):612-8. PMCID: PMC3107000

Zhang Z, Kofonow JM, Finkelman BS, Doghramji L, Chiu AG, Kennedy DW, Cohen NA, and Palmer JN, 2011, "Clinical factors associated with bacterial biofilm formation in chronic rhinosinusitis," Otolaryngol Head Neck Surg., 144(3):457-62.

Zhang Z, Linkin DR, Finkelman BS, O'Malley BW Jr, Thaler ER, Doghramji L, Kennedy DW, Cohen NA, and Palmer JN, "Asthma and biofilm-forming bacteria are independently associated with revision sinus surgeries for chronic rhinosinusitis," J Allergy Clin Immunol.,128(1):221-223.e1.

Dionisio KL, Rooney MS, Arku RE, Friedman AB, Hughes AF, Vallarino J, Agyei-Mensah S, Spengler JD, and Ezzati M, 2010, "Within-neighborhood patterns and sources of particle pollution: mobile monitoring and geographic information system analysis in four communities in Accra, Ghana," Env. Health Persp. 118(5):607-13.  PMCID: PMC2866674.

Ezzati M, Horwitz MEM, Thomas DSK, Friedman AB, Roach R, Clark T, Murray CJL, and Honigman B, 2011, "Altitude, life expectancy, and mortality from ischemic heart disease and COPD: population-based analysis of United States counties," J. Epi. Comm. Health (In press). PMCID: PMC Journal – In Process.

Gandal MJ, Ehrlichman RS, Rudnick ND, and Siegel SJ, 2008, "A novel electrophysiological model of chemotherapy-induced cognitive impairments in mice," Neuroscience, 157(1):95-104. PMCID: PMC2715916

Ehrlichman RS, Gandal MJ, Maxwell CR, Lazarewicz MT, Finkel LH, Contreras D, Turetsky BI, and Siegel SJ, 2009, "N-methyl-d-aspartic acid receptor antagonist-induced frequency oscillations in mice recreate pattern of electrophysiological deficits in schizophrenia," Neuroscience, 158(2):705-12.

Lazarewicz MT, Ehrlichman RS, Maxwell CR, Gandal MJ, Finkel LH, and Siegel SJ, 2010, "Ketamine modulates theta and gamma oscillations," J. Cogn. Neurosci., 22(7):1452-64.

Roberts TP, Khan SY, Rey M, Monroe JF, Cannon K, Blaskey L, Woldoff S, Qasmieh S, Gandal M, Schmidt GL, Zarnow DM, Levy SE, and Edgar JC, 2010, "MEG detection of delayed auditory evoked responses in autism spectrum disorders: towards an imaging biomarker for autism," Autism Res., 3(1):8-18. PMCID: PMC3099241

Amann LC, Gandal MJ, Lin R, Liang Y, and Siegel SJ, 2010, "In vitro-in vivo correlations of scalable PLGA-risperidone implants for the treatment of schizophrenia," Pharm Res., 27(8):1730-7. 

Amann LC, Gandal MJ, Halene TB, Ehrlichman RS, White SL, McCarren HS, and Siegel SJ, 2010, "Mouse behavioral endophenotypes for schizophrenia," (Review), Brain Res. Bull., 83(3-4):147-61.  

Gandal MJ, Edgar JC, Ehrlichman RS, Mehta M, Roberts TP, and Siegel SJ, 2010, "Validating γ oscillations and delayed auditory responses as translational biomarkers of autism," Biol. Psychiatry, 68(12):1100-6.

Gandal MJ, Edgar JC, Klook K, and Siegel SJ, 2011, "Gamma synchrony: Towards a translational biomarker for the treatment-resistant symptoms of schizophrenia", (Review), Neuropharmacology 62(3):1504-18. PMCID: PMC3264822

Goncalves MD
, Moore RH, Stunkard AJ, and Allison KC, 2009, ”The treatment of night eating: the patient's perspective,” European Eating Disorders Review, 17: 184-190.

A Akpan I, Goncalves MD, Dhir R, Yin X, Pistilli EE, Bogdanovich S, Khurana TS, Ucran J, Lachey J, and Ahima RS, 2009, “The effects of a soluble activin type IIB receptor on obesity and insulin sensitivity,” International Journal of Obesity,  33: 1265-1273. PMCID: PMC2783781

Goncalves MD, Pistilli EE, Balduzzi A, Birnbaum MJ, Lachey J, Khurana TS, and Ahima RS 2010, “Akt deficiency attenuates muscle size and function but not the response to ActRIIB inhibition,” PLoS One, 5: e12707. PMCID: PMC2939888

Pistilli EE, Bogdanovich S, Goncalves MD, Ahima RS, Lachey J, Seehra J, and Khurana T, 2011, “Targeting the activin type IIB receptor to improve muscle mass and function in the mdx mouse model of Duchenne muscular dystrophy,”  The American Journal of Pathology,  178: 1287-1297. PMCID: PMC3069867

Intlekofer A, Banerjee A, Takemoto N, Gordon S, Dejong C, Shin H, Hunter C, Wherry E, Lindsten T, and Reiner S, 2008, "Anomalous Type 17 Response to Viral Infection by CD8+ T Cells Lacking T-bet and Eomesodermin," Science, 321:408-411.  PMCID: PMC2807624

Banerjee A, Gordon S, Intlekofer A, Paley M, Mooney E, Lindsten T, Wherry E, and Reiner S, 2010, "Cutting edge: The Transcription Factor Eomesodermin Enables CD8+ T Cells to Compete for the Memory Cell Niche," J Immunol., 185:4988-4992.  PMCID: PMC2975552

Kinjyo I, Gordon S, Intlekofer A, Dowdell K, Mooney E, Caricchio R, Grupp S, Teachey D, Rao V, Lindsten T, and Reiner S, 2010, "Cutting Edge: Lymphoproliferation Caused by Fas Deficiency is Dependent on the Transcription Factor Eomesodermin," J Immunol., 185:7151-7155.  PMCID: PMC2997140

Gordon S, Carty S, Kim J, Zou T, Smith-Garvin J, Alonzo E, Haimm E, Sant'angelo D, Koretzky G, Reiner S, and Jordan M, 2011, "Requirements for Eomesodermin and Promyelocytic Leukemia Zinc Finger in the Development of Innate-Like CD8+ T Cells," J Immunol., 186:4573-4578.  PMCID: PMC3085897

Qui H, Bandyopadhyay S, St. Rose M, Hagymasi A, Ménoret A, Mittler R, Gordon S, Reiner S, Vella A, and Adler A, 2011, "CD134 Plus CD137 Dual Costimulation Induces Eomesodermin in CD4 T Cells to Program Cytotoxic Th1 Differentiation," The Journal of Immunology, 187(7):3555-64. PMCID: PMC3178659

Anokye-Danso F, Trivedi CM, Juhr D, Gupta M, Cui Z, Tian Y, Zhang Y, Yang W, Gruber PJ, Epstein JA, and Morrisey EE, 2011, "Highly efficient miRNA-mediated reprogramming of mouse and human somatic cells to pluripotency," Cell Stem Cell, Vol. 8, 376-88. PMCID: PMC3090650

Shen CJ, Raghavan S, Xu Z, Baranski JD, Yu X, Wozniak MA, Miller JS, Gupta M, Buckbinder L, and Chen CS, 2011, "Decreased cell adhesion promotes angiogenesis in a Pyk2-dependent manner," Exp Cell Res., Vol. 317, 1860-71. PMCID: PMC3123418

Bertozzi CC, Schmaier AA, Mericko P, Hess PR, Zou Z, Chen M, Chen CY, Xu B, Lu MM, Zhou D, Sebzda E, Santore MT, Merianos DJ, Stadtfeld M, Flake AW, Graf T, Skoda R, Maltzman JS, Koretzky GA, and Kahn ML, 2010, “Platelets regulate lymphatic vascular development through CLEC-2-SLP-76 signaling,” Blood, 116(4):661-70.

Signarvic RS, Cierniewska A, Stalker TJ, Fong KP, Chatterjee MS, Hess PR, Ma P, Diamond SL, Neubig RR, and Brass LF, 2010, “RGS/Gi2alpha interactions modulate platelet accumulation and thrombus formation at sites of vascular injury,” Blood, 116(26):6092-100. PMCID: PMC3031394

Bertozzi CC, Hess PR, and Kahn ML, 2010, “Platelets: covert regulators of lymphatic development,” (Review), Arterioscler Thromb Vasc Biol., 30(12):2368-71. PMCID: PMC2994722

Zlotoff DA, Zhang SL, De Obaldia ME, Hess PR, Todd SP, Logan TD, and Bhandoola A 2011, “Delivery of progenitors to the thymus limits T-lineage reconstitution after bone marrow transplantation,” Blood, 118(7):1962-70. PMCID: PMC3158723

Hoffmann C, Hill D, Minkah N, Kirn T, Troy A, Artis D, and Bushman F, 2009, "Community-Wide Response of the Gut Microbiota to Enteropathogenic Citrobacter rodentium Infection Revealed by Deep Sequencing," Infection and Immunity, 77(10):4668-78. PMCID: PMC2747949

Hill D, and Artis D, 2009, "Maintaining diplomatic relations between mammals and beneficial microbial communities," (Review), Science Signaling, 98:77-79. PMCID: PMC2833337

Hill D, Hoffmann C, Abt M, Du Y, Kobuley D, Kirn T, Bushman F, and Artis D, 2010, "Metagenomic analyses reveal antibiotic-induced temporal and spatial changes in intestinal microbiota with associated alterations in immune cell homeostasis," Mucosal Immunology, 2:148-58. PMCID: PMC2824244.

Hill D, and Desai S, 2010, "Malaria parasite mutants with altered erythrocyte permeability: a new drug resistance mechanism and important molecular tool," (Review), Future Microbiology. 5:81-97. PMCID: PMC2819201.

Hill D and Artis D, (2010), "Intestinal bacteria and the regulation of immune cell homeostasis," (Review), Annual Reviews of Immunology, 28:623-67.

Siracusa M, Saenz S, Hill D, Kim B, Headley M, Doering T, Wherry E, Jessup H, Siegel L, Kambayashi T, Dudek E, Kubo M, Cianferoni A, Spergel J, Ziegler S, Comeau M and Artis D, 2011, "TSLP promotes IL-3-independent basophil hematopoiesis and type 2 inflammation," Nature, 477(7363):229-33. PMCID: PMC3263308

Dreses-Werringloer U, Lambert JC, Vingtdeux V, Zhao H, Vais H, Siebert A, Jain A, Koppel J, Rovelet-Lecrux A, Hannequin D, Pasquier F, Galimberti D, Scarpini E, Mann D, Lendon C, Campion D, Amouyel P, Davies P, Foskett JK, Campagne F, Marambaud P, 2008, “A polymorphism in CALHM1 influences Ca2+ homeostasis, Abeta levels, and Alzheimer's disease risk,” Cell, 133:1149-61. PMCID: PMC2577842

 Kumar MA, Jain A, Dechant VE, Saito T, Rafael T, Aizawa H, Dysart KC, Katayama T, Ito Y, Araki N, Abe T, Balice-Gordon R, Dalmau J, 2010, “ Anti-N-methyl-D-aspartate receptor encephalitis during pregnancy,” Arch. Neurol., 67:884-7.

 Moscato EH, Jain A, Peng X, Hughes EG, Dalmau J, Balice-Gordon R, 2010, “Mechanisms underlying autoimmune synaptic encephalitis leading to disorders of memory, behavior and cognition: insights from molecular, cellular and synaptic studies,” (Review), Eur. J. Neurosci., 32:298-309. PMCID: PMC2955837

Juntilla MM, Patil VD, Calamito M, Joshi RP, Birnbaum MJ, and Koretzky GA, 2010, "AKT1 and AKT2 maintain hematopoietic stem cell function by regulating reactive oxygen species," Blood, 115(20):4030-8. PMCID:  PMC2875090

Kadauke S and Blobel GA, 2009, "Chromatin loops in gene regulation," (Review), Biochim Biophys Acta, 1789:17-25.  PMCID:  PMC2638769

Blobel GA, Kadauke S, Wang E, Lau AW, Zuber J, Chou MM and Vakoc CR, 2009, "A reconfigured pattern of MLL occupancy within mitotic chromatin promotes rapid transcriptional reactivation following mitotic exit," Mol Cell, 36:970-83.  PMCID:  PMC2818742

Lamonica JM, Deng W, Kadauke S, Campbell AE, Gamsjaeger R, Wang H, Cheng Y, Billin AN, Hardison RC, Mackay JP, and Blobel GA, 2011, "Bromodomain protein Brd3 associates with acetylated GATA1 to promote its chromatin occupancy at erythroid target genes," Proc Natl Acad Sci U S A, 108:E159-68.  PMCID:  PMC3107332

Kirino Y, Kim N, de Planell-Saguer M, Khandros E, Chlorean S, Klein P, Rigoutsos I, Jongens T, and Mourelatos Z, 2009, “Arginine methylation of Piwi proteins catalysed by dPRMT5 is required for Ago3 and Aub stability,” Nature Cell Biology, 11:652-658. PMCID: PMC2746449.

 Chou S, Khandros E, Bailey C, Nichols K, Vakoc C, Yao Y, Huang Z, Crispino J, Hardison R, Blobel G, and Weiss M, 2009, “Graded repression of PU.1/Sfpi1 gene transcription by GATA factors regulates hematopoietic cell fate,”  Blood, 114:983-94. PMCID: PMC2721792.

Yu D, dos Santos C, Zhao G, Jiang J, Amigo J, Khandros E, Dore L, Yao Y, D'Souza J, Zhang Z, Ghaffari S, Choi J, Friend S, Tong W, Orange J, Paw B, and Weiss M, 2010, “miR-451 protects against erythroid oxidant stress by repressing 14-3-3zeta,” Genes and Development, 24:1620-33. PMCID: PMC2912560.

Nasimuzzaman M, Khandros E, Wang X, Kong Y, Zhao H, Weiss D, Rivella S, Weiss M, and Persons D, 2010, “Analysis of alpha hemoglobin stabilizing protein overexpression in murine b-thalassemia,” American Journal of Hematology, 85:820-822.

 Khandros E, and Weiss M, 2010, “Protein quality control during erythropoiesis and hemoglobin synthesis,” (Review), Hematology Oncology Clinics of North America 24:1071-88.

Kirino Y, Vourekas A, Khandros E and Mourelatos Z, 2011, “Immunoprecipitation of piRNPs and Directional, Next Generation Sequencing of piRNAs,” Methods in Molecular Biology, 725:281-293.

Pan W, Choi SC, Wang H, Qin Y, Volpicelli-Daley L, Swan L, Lucast L, Khoo C, Zhang X, Li L, Abrams CS, Sokol SY, and Wu D, 2008, “Wnt3a-mediated formation of phosphatidylinositol 4,5-bisphosphate regulates LRP6 phosphorylation,” Science, 321: 1350-53. PMCID: PMC2532521

Sachdeva MM, Claiborn KC, Khoo C, Yang J, Groff DN, Mirmira RG, and Stoffers DA, 2009, “Pdx1 (MODY4) regulates pancreatic beta cell susceptibility to ER stress,” Proc Natl Acad Sci USA, 106(45):19090-5. PMCID: PMC2776433

Khoo C, Yang J, Rajpal G, Wang Y, Liu J, Arvan P, and Stoffers DA, 2011, “Endoplasmic Reticulum Oxidoreductin-1-Like beta (ERO1l beta) Regulates Susceptibility to Endoplasmic Reticulum Stress and Is Induced by Insulin Flux in beta-Cells,” Endocrinology, 152(7):2599-608. PMCID: PMC3115612

Smith-Garvin JE, Burns JC, Gohil M, Zou T, Kim JS, Maltzman JS, Wherry EJ, Koretzky GA ,and Jordan MS, 2010, “T cell receptor signals direct the composition and function of the memory CD8+ T cell pool,” Blood, 116:5548-59. PMCID: PMC3031403

Gordon S, Carty S, Kim JS, Zou T, Smith-Garvin JE, Alonzo ES, Haimm E, Sant’Angelo DB, Koretzky GA, Reiner SL, and Jordan MS, 2011, “Requirements for Eomesodermin and PLZF in the development of innate-like CD8+ T cells,” J. Immunol., 186:4573-8. PMCID: PMC3085897

Chang JT, Ciocca ML, Kinjyo I, Palanivel VR, McClurkin CE, Dejong CS, Mooney EC, Kim JS, Steinel NC, Oliaro J, Yin CC, Florea BI, Overkleeft HS, Berg LJ, Russell SM, Koretzky GA, Jordan MS, and Reiner SL,  2011, “Asymmetric proteasome segregation, regulated degradation, and the unequal inheritance of a fate determinant during cell division,” Immunity, 34:492-504. PMCID: PMC3088519

Kim JS, Smith-Garvin JE, Koretzky GA, and Jordan MS, 2011, “The requirements for natural Th17 cell development are distinct from those of conventional Th17 cells,” J. Exp. Med., 208(11):2201-7. PMCID: PMC3201206

Kim MM, Metlay J, Cohen A, Feldman H, Hennessy S, Kimmel S, Strom B, and Doshi JA, 2010, "Hospitalization costs associated with warfarin-related bleeding events among older community-dwelling adults," Parmacoepidemiology and Drug Safety,  19, 731-6.  PMID:20583203

Li P, Kim MM, and Doshi JA, 2010, "Comparison of the performance of the CMS Hierarchical Condition Category (CMS-HCC) risk adjuster with the Charlson and Elixhauser comorbidity measures in predicting mortality," BMC Health Services Research,10: 245.  PMCID: PMC2936901

Kim MM, Barnato AE, Angus DC, Fleisher LA, and Kahn JM, 2010, “The effect of multidisciplinary care teams on intensive care unit mortality,” Archives of Internal Medicine, 170:369-76.

Hendricks AG, Lazarus JE, and Holzbaur EL, 2009, "Microtubule plus-end tracking by CLIP-170 requires EB1," Proc Natl Acad Sci U S A. 106(2):492-7. PMCID: PMC2626730

Dixit R, Barnett B, Lazarus JE, Tokito M, Goldman YE, and Holzbaur EL, 2010, "Dynein at odd angles?" (Review) Nat Cell Biol., 12(12):1126-8.

Leavens K, Easton R, Shulman G, Previs S and Birnbaum M, 2009, "Akt2 is required for hepatic lipid accumulation in models of insulin resistance," Cell Metabolism, 10: 405-418. PMCID: PMC2796129

Leavens K and Birnbaum M, 2011, "Insulin Signaling to Hepatic Lipid Metabolism in Health and Disease,” (Review), Critical Reviews in Biochemistry & Molecular Biology, 46(3): 200-215.

LeBoeuf M, Terrell A, Trivedi S, Sinha S, Epstein JA, Olson EN, Morrisey EE, Millar SE, 2010, "Hdac1 and Hdac2 act redundantly to control p63 and p53 functions in epidermal progenitor cells," Developmental Cell., 19(6),807-18. PMCID: PMC3003338

Lee EK, and Diehl JA, 2011, “Breast cancer go sMAD: Cyclin towards aggressive phenotypes,” (Review), Cell Cycle, 10(2): 187.

Barbash O, Lee EK, and Diehl JA, 2011, “Phosphorylation-dependent regulation of SCFFbx4 dimerization and activity involves a novel component, 14-3-3ε,” Oncogene, 30(17):1995-2002. PMCID: PMC3084329

Murphy SL, Li H, Zhou S, Schlachterman A, and High KA, 2008, “Prolonged susceptibility to antibody-mediated neutralization for adeno-associated vectors targeted to the liver,” Molecular Therapy, 16:138-145.

Murphy SL, Li H, Mingozzi F, Sabatino DE, Hui DJ, Edmonson SA, and High KA, 2009, “Diverse IgG subclass responses to adeno-associated virus infection and vector administration,” Journal of Medical Virology, 81:65-74. PMCID: PMC2782623.

Li H, Malani N, Hamilton SR, Schlachterman A, Bussadori G, Edmonson SE, Shah R, Arruda VR, Mingozzi F, Wright JF, Bushman FD, and High KA, 2011, “Assessing the potential for AAV vector genotoxicity in a murine model,” Blood, 117:3311-3319. PMCID: PMC3069673.

Li H, Haurigot V, Doyon Y, Li T, Wong SY, Bhagwat AS, Malani N, Anguela XM, Sharma R, Ivanciu L, Murphy SL, Finn JD, Khazi FR, Zhou S, Paschon DE, Rebar EJ, Bushman FD, Gregory PD, Holmes MC, and High KA 2011, “In vivo genome editing restores haemostasis in a mouse model of haemophilia,” Nature, 475:217-221. PMCID: PMC3152293

Lee T, Li Y, Chesi A, Hart M, Ramos D, Jethava N, Hosangadi D, Epstein J, Hodges B, Bonini N, Gitler A, 2011, “Evaluating the prevalence of polyglutamine repeat expansions in amyotrophic lateral sclerosis.” Neurology, 76(24):2062-5. PMCID: PMC3111240

Lee T*, Li Y*, Ingre C, Weber M, Grehl T, Gredal O, de Carvalho M, Meyer T, Tysnes O, Auburger G, Gispert S, Bonini N, Andersen P, Gitler A, 2011, “Ataxin-2 intermediate-length polyglutamine expansions in European ALS patients,” Human Molecular Genetics, 20(9):1697-700. PMCID: PMC3071667. (*co-first authors)

Lin G, and Hankenson K, 2011, “Integration of BMP, Wnt, and Notch signaling pathways in osteoblast differentiation,” (Review), J Cell Biochem., 112(12):3491-501. PMCID: PMC3202082

Lippa AM and Goulian M, 2009, “Feedback inhibition in the PhoQ/PhoP signaling system by a membrane peptide,” PLoS Genetics, 5: e1000788. PMCID: PMC2789325

Jiao J, Guan H, Lippa AM, and Ricciardi RP, 2010, “The N terminus of adenovirus type 12 E1A inhibits major histocompatibility complex class I expression by preventing phosphorylation of NF-kappaB p65 Ser276 through direct binding,” Journal of Virology, 84: 7668-74. PMCID: PMC2897633

Bertout J, Majmundar A, Gordan J, Lam J, Ditsworth D, Keith B, Brown E, Nathanson K, and Simon M, 2009, "HIF2α inhibition promotes p53 pathway activity, tumor cell death, and radiation responses," Proceedings of the National Academy of Sciences, 106:14391–14396. PMCID: PMC2726037

Majmundar A, Wong W, and Simon M, 2010, "Hypoxia-inducible factors and the response to hypoxic stress," (Review), Molecular Cell, 40:294-309. PMCID: PMC3143508

Mesquita R, Skuli N, Kim M, Liang J, Schenkel S, Majmundar A, Simon M, and Yodh A, 2011, "Hemodynamic and metabolic diffuse optical monitoring in a mouse model of hindlimb ischemia," Biomedical Optics Express, 1: 1173–1187. PMCID: PMC301807

Zou T, May RM, and Koretzky GA, 2010, "Understanding signaling integration through targeted mutation of an adapter protein", (Review), FEBS Lett., 584:4901-9. PMCID: PMC 3008419

Yin H, Gerlach L, Miller M, Moore D, Liu D, Vilaire G, Bennett J, and DeGrado W, 2006, “Arylamide derivatives as allosteric inhibitors of integrin 21 / type I collagen interaction,” Bioorg Med Chem Lett., 16(13):3380-2.

Yin H, Litvinov R, Vilaire G Zhu H, Li W, Caputo G, Moore D, Lear J, Weisel J, Degrado W, and Bennett J, 2006, “Activation of platelet aIIbb3 by an exogenous peptide corresponding to the transmembrane domain of aIIb,” Biol Chem., 281(48):36732-41. PMCID: PMC3012518

Moore D, Berger B, and DeGrado W, 2008, “Protein-protein interactions in the membrane: sequence, structural, and biological motifs,” (Review), Structure, 16(7):991-1001.

Metcalf D, Moore D, Wu Y, Kielec J, Molnar K, Valentine K, Wand, J, Bennett, J, and DeGrado W,  2010, “NMR analysis of the alphaIIb beta3 cytoplasmic interaction suggests a mechanism for integrin regulation,”  Proc Natl Acad Sci U S A, 107(52):22481-6. PMCID: PMC3012518

Bennett, J, and Moore D, 2010, “Regulation of platelet beta 3 integrins,” (Review), Haemitologica, 95(7):1049-51. PMCID: PMC2895026

Grigoryan G, Moore D, and DeGrado W, 2011, “Transmembrane Communication: General Principles and Lessons from the Structure and Function of the M2 Proton Channel, K(+) Channels, and Integrin Receptors,” (Review), Annual Review of Biochemistry, 80, 211-237. 

Shandler S, Korendovych I, Moore DT, Smith-Dupont K, Streu C, Litvinov R, Billings P, Gai F, Bennett J, and DeGrado W, 2011, “Computational Design of a β-Peptide That Targets Transmembrane Helices,” J Am Chem Soc., 133(32):12378-81. PMCID: PMC3155016

Kelz M, Sun Y, Chen J, Meng Q, Moore J, Veasey S, Dixon S, Thornton M, Funato H and Yanagisawa M, 2008, "An essential role for orexins in emergence from general anesthesia," PNAS, 105:1309-1314. PMCID: PMC2234134

Moore J and Kelz M, 2009, "Opiates, sleep, and pain: The adenosinergic link," Anesthesiology, 111:1175-6. PMCID: PMC2784658

Friedman E, Sun Y, Moore J, Hung H, Meng Q, Perera P, Joiner W, Thomas S, Eckenhoff R, Sehgal A, and Kelz M, 2010, "A conserved behavioral state barrier impedes transitions between anesthetic-induced unconsciousness and wakefulness," PLoS ONE 5:e11903. PMCID: PMC2912772

Moore J and Kelz M, 2011, "Brain anatomy of relevance to the anesthesiologist," The Neuroscientific Foundations of Anesthesiology, OUP (In press). PMC Journal in process.

Pick J, Chen Y, Moore J, Sun Y, Wyner A, Friedman E and Kelz M, 2011, "Rapid eye movement sleep debt accrues in mice exposed to volatile anesthetics," Anesthesiology, 115(4):702-12. PMCID: PMC3178044.

Perlson E, Maday S, Fu MM, Moughamian AJ, and Holzbaur EL, 2010, “Retrograde Axonal Transport: Pathways to Cell Death?,” (Review), Trends in Neuroscience, 33(7): 335-344.  PMCID: PMC2902719

Moughamian AJ, and Holzbaur EL, 2011, “Cytoplasmic Dynein Dysfunction and Neurodegenerative Disease,” (Book Chapter), in: S.M. King (Editor), Dyneins. Academic Press is an imprint of Elsevier, London, Waltham, San Diego, pp. 584-601.

Nayak RR, Kearns M, Spielman R and Cheung VG, 2009,  "Coexpression network based on natural variation in human gene expression reveals gene interactions and functions,"  Genome Research 19, 1953-1962.  PMCID: PMC2775589

Dombroski BA*, Nayak RR*, Ewens KG, Ankener W, Cheung VG and Spielman RS, 2010, "Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells," Am J Hum Genet., 86: 719-729. PMCID: PMC2869002.  (* Co-first authors)

Cheung VG, Nayak RR, Wang IX, Elwyn S, Morley M and Spielman R, 2010, "Polymorphic Cis and Trans Regulation of Human Gene Expression,"  PLoS Biol., 8(9). pii: e1000480.  PMCID: PMC2939022

Culyba MJ, Hwang Y, Hu JY, Minkah N, Ocwieja KE, and Bushman FD, 2010, “Metal cofactors in the structure and activity of the fowlpox resolvase,” J. Mol. Biol., 399:182-195. PMCID: PMC2880857

Ocwieja KE, Brady TL, Ronen K, Huegel A, Roth SL, Schaller T, James LC, Towers GJ, Young JA, Chanda SK, König R, Malani N, Berry CC, and Bushman FD, 2011, “HIV integration targeting: a pathway involving Transportin-3 and the nuclear pore protein RanBP2,” PLoS Pathog., 7:e1001313. PMCID: PMC3053352

Olsen AL, Stachura DL, and Weiss MJ, 2006, “Designer blood: creating hematopoietic lineages from embryonic stem cells,” (Review), Blood 107(4):1265-75. PMCID: PMC1895404.

Olsen AL, Bloomer SA, Chan EP, Gaca MDA, Georges PC, Sackey B, Uemura M, Janmey PA, and Wells RG, 2011, “Hepatic stellate cells require a stiff environment for myofibroblastic differentiation,” Am J Physiol Gastrointest Liver Physiol., 301(1):G110-8. PMCID: PMC3129929.

Wen J, Olsen AL, Perepelyuk M, and Wells RG 2011, “Isolation of rat portal fibroblasts by in situ liver perfusion,” Journal of Visual Experiments, (In press). PMC Journal in process.

Paley MA
, and Wherry EJ, 2010, “TCF-1 flips the switch on Eomes,” (Commentary), Immunity, 33:145-147.

Banerjee A, Gordon SM, Intlekofer AM, Paley MA, Mooney EC, Lindsten T, Wherry EJ, and Reiner SL, 2010, “Cutting edge: The transcription factor eomesodermin enables CD8+ T cells to compete for the memory cell niche,” J Immunol., 185:4988-4992. PMCID: PMC2975552

Kao C, Oestreich KJ, Paley MA, Crawford A, Angelosanto JM, Ali MA, Intlekofer AM, Boss JM, Reiner SL, Weinmann AS, and Wherry EJ, 2011, “Transcription factor T-bet represses expression of the inhibitory receptor PD-1 and sustains virus-specific CD8(+) T cell responses during chronic infection,” Nat Immunol., 12:663-671.

Orlova K, Parker W, Heuer G, Tsai V, Yoon J, Baybis M, Fenning R, Strauss K and Crino P, 2010, “STRADalpha deficiency results in aberrant mTORC1 signaling during corticogenesis in humans and mice,” Journal of Clinical Investigation, 120(5):1591-1602. PMCID: PMC2860905

Parker W, Orlova K, Heuer G, Baybis M, Aronica E, Frost M, Wong M and Crino P, 2011, “Enhanced epidermal growth factor, hepatocyte growth factor, and vascular endothelial growth factor expression in tuberous sclerosis complex,” American Journal of Pathology, 178(1):296-305. PMCID: PMC3069836

Hardesty D, Sanborn M, Parker W and Storm P, 2011, “Perioperative seizure incidence and risk factors in 223 pediatric brain tumor patients without prior seizures,” Journal of Neurosurgery: Pediatrics, 7(6):609-615.

Liu Z, Yang M, Peterfreund GL, Tsou AM, Selamoglu N, Daldal F, Zhong Z, Kan B, and Zhu J, 2011, "Vibrio cholerae anaerobic induction of virulence gene expression is controlled by thiol-based switches of virulence regulator AphB," Proc Natl Acad Sci U S A, 108:810-815. PMCID: PMC3021084

Okeoma C, Petersen J, and Ross S, 2009, “Expression of murine APOBEC3 alleles in different mouse strains and their effect on mouse mammary tumor virus infection,” J. Virol., 83:3029-38.  PMCID: PMC2655539

Wilen C, Parrish N, Pfaff J, Decker J, Henning E, Haim H, Petersen J, Wojcechowskyj J, Sodroski J, Haynes B, Montefiori D, Tilton J, Shaw G, Hahn B, and Doms R, 2011, “Phenotypic and Immunologic Comparison of Clade B Transmitted/Founder and Chronic HIV-1 Envelope Glycoproteins,” J. Virol., (17):8514-27. PMCID: PMC3165820

Mellon EA, Pilkinton DT, Clark CM, Elliott MA, Witschey WR 2nd, Borthakur A, and Reddy R, 2009, "Sodium MR imaging detection of mild Alzheimer disease: preliminary study," Amer. J. Neurorad., 30:978-984.  PMCID:  PMC2866317

Pilkinton DT, Gaddam SR, and Reddy R, 2011, "Characterization of paramagnetic effects of molecular oxygen on blood oxygenation level-dependent-modulated hyperoxic contrast studies of the human brain," Magn. Reson. Med., 66:794–801.  

Pilkinton DT, Hiraki T, Detre JA, Greenberg JH, Reddy  R, "Absolute Cerebral Blood Flow Quantification With Pulsed Arterial Spin Labeling During Hyperoxia Corrected With the Simultaneous Measurement of the Longitudinal Relaxation Time of Arterial Blood," Magn. Reson. Med., doi: 10.1002/mrm.23137.

Finnbert N, Hart L, Dolloff N, Rodgers Z, Dicker D, and El-Deiry W, 2011, "High-resolution Imaging and Antitumor Effects of GFP(+) Bone Marrow-derived Cells Homing to Syngeneic Mouse Colon Tumors," The American Journal of Pathology, 179(5):2169-76. PMCID: PMC3204038

Rowh MA, and Bassing CH, 2008, “Foxos around make B cells tolerable,” (Commentary), Nat Immunol., 9(6):586-8.

Yang-Iott KS, Carpenter AC, Rowh MA, Steinel N, Brady BL, Hochedlinger K, Jaenisch R, Bassing CH, 2010, “TCR beta feedback signals inhibit the coupling of recombinationally accessible V beta 14 segments with DJ beta complexes,” J Immunol, 184(3):1369-78. PMCID: PMC2873682

Rowh MA, Demicco A, Horowitz JE, Yin B, Yang-Iott KS, Fusello AM, Hobeika E, Reth M, Bassing CH, 2011, “Tp53 deletion in B lineage cells predisposes mice to lymphomas with oncogenic translocations,” Oncogene, 30(47):4757-64.

Bassett EA, Wood S, Salimian KJ, Ajith S, Foltz DR, and Black BE, 2010, “Epigenetic centromere specification directs aurora B accumulation but is insufficient to efficiently correct mitotic errors,” Journal of Cell Biology, Vol. 190, 177-185. PMCID: PMC2930274

Salimian KJ, Ballister ER, Smoak EM, Wood S, Panchenko T, Lampson MA, and Black BE,  2011, “Feedback control in sensing chromosome biorientation by the aurora B kinase,” Current Biology, 21, 1158-1165. PMCID: PMC3156581

Sandesara U and Wooten T, 2011, No One Had a Tongue to Speak: The Untold Story of One of History’s Deadliest Floods, (Book), Prometheus Books.

Kirino Y, Vourekas A, Sayed N, de Lima Alves F, Thomson T, Lasko P, Rappsilber J, Jongens TA, and Mourelatos Z, 2010, "Arginine methylation of Aubergine mediates Tudor binding and germ plasm localization," RNA, 16, 70-78.  PMCID:  PMC2802038

Zou Z, Chen H, Schmaier AA, Hynes RO, and Kahn ML, 2007, “Structure-function analysis reveals discrete 3 integrin inside-out and outside-in signaling pathways in platelets,” Blood, 109: 3824-90. 

Neeves KB, Maloney SF, Fong KP, Schmaier AA, Kahn ML, Brass LF, and Diamond SL, 2008  “Microfluidic focal thrombosis model for measuring murine platelet deposition and stability:  PAR4 signaling enhances shear resistance of platelet aggregates,” J Thromb Haemost., 6: 2193-201. 

Zou Z, Schmaier AA, Cheng L, Mericko P, Dickeson SK, Stricker TP, Santoro SA, Kahn ML, 2009, “Negative regulation of activated 2 integrins during thrombopoiesis,” Blood, 113: 6428-39. 

Schmaier AA, Zou Z, Kazlauskas A, Emert-Sedlak L, Fong KP, Neeves KB, Maloney SF, Diamond SL, Kunapuli SP, Ware J, Brass LF, Smithgall TE, Saksela K, and Kahn ML, 2009  “Molecular priming of Lyn by GPVI enables an immune receptor to adopt a hemostatic role,”  Proc Natl Acad Sci USA, 106: 21167-72. PMCID: PMC2795544

Bertozzi CC, Schmaier AA, Zou Z, Mericko P, Hess PR, Zou Z, Chen M, Chen CY, Xu B, Lu MM, Zhou D, Sebzda E, Santore MT, Merianos DJ, Stadtfeld M, Flake AW, Graf T, Skoda R, Maltzman JS, Koretzky GA, and Kahn ML, 2010, “Platelets regulate lymphatic vascular development through CLEC-2-SLP-76 signaling,”  Blood, 116: 661-70.  PMCID: 20363774

Opalinska JB, Bersenev A, Zhang Z, Schmaier AA, Choi J, Yao Y, D'Souza J, Tong W, and Weiss MJ,  2010, “MicroRNA expression in maturing murine megakaryocytes,”  Blood, 116: e128-38.  PMCID: PMC3012601

Schmaier AA, Stalker TJ, Runge JJ, Lee D, Nagaswami C, Mericko P, Chen M, Cliche S, Gariépy C, Brass LF, Hammer DA, Weisel JW, Rosenthal K, and Kahn ML, 2011 “Occlusive thrombi arise in mammals but not birds in response to arterial injury: evolutionary insight into human cardiovascular disease,” Blood, 118(13):3661-9. PMCID: PMC3186337

Ruzankina Y, Schoppy DW, Asare A, Clark CE, Vonderheide RH, and Brown EJ, 2009, "Tissue regenerative delays and synthetic lethality in adult mice after combined deletion of Atr and Trp53," Nat. Genet., 41(10):1144-9. PMCID: PMC2823374.

Schoppy DW, Ruzankina Y, and Brown EJ, 2010, "Removing all obstacles: a critical role for p53 in promoting tissue renewal," (Review) Cell Cycle, 9(7):1313-9. PMCID: PMC2980577.

Gilad O, Nabet BY, Ragland RL, Schoppy DW, Smith KD, Durham AC and Brown EJ, 2010,"Combining ATR suppression with oncogenic Ras synergistically increases genomic instability, causing synthetic lethality or tumorigenesis in a dosage-dependent manner," Cancer Res., 70(23):9693-702. PMCID: PMC3057927.

Sun Y, Schroeder HW 3rd, Beausang JF, Homma K, Ikebe M and Goldman YE, 2007, “Myosin VI walks ‘wiggly’ on actin with large and variable tilting,” Mol Cell, 28:954-964. PMCID:  PMC2683265

Beausang JF, Schroeder HW 3rd, Nelson PC and Goldman YE, 2008, “Twirling of actin by myosins II and V observed via polarized TIRF in a modified gliding assay,” Biophys J, 95:5820-5831. PMCID:  PMC2599829

Schroeder HW 3rd, Mitchell C, Shuman H, Holzbaur EL and Goldman YE, 2010, “Motor Number Controls Cargo Switching at Actin-Microtubule Intersections In Vitro,” Curr Biol, 20:687-696. PMCID:  PMC2934746

Hendricks AG, Perlson E, Ross JL, Schroeder HW 3rd, Tokito M, and Holzbaur EL, 2010, “Motor Coordination via a Tug-of-War Mechanism Drives Bidirectional Vesicle Transport,” Curr Biol, 20:697-702. PMCID:  PMC2908734

Shao G, Patterson-Fortin J, Messick TE, Feng D, Shanbhag N, Wang Y, and Greenberg RA, 2009, “MERIT40 Controls BRCA1-Rap80 Complex Integrity and Recruitment to DNA Double-Strand Breaks,” Genes and Development, 23:740-54.  PMCID:  PMC2661612

Shanbhag NM, Rafalska-Metcalf IU, Balane-Bolivar C, Janicki SM, and Greenberg RA, 2010, “ATM-Dependent Chromatin Changes Silence Transcription in Cis to DNA Double-Strand Breaks,” Cell, 141:970-81.  PMCID:  PMC2920610

Shanbhag NM, and Greenberg RA, 2010, “Neighborly DISCourse: DNA Double Strand Breaks Silence Transcription,” (Commentary), Cell Cycle, 9:3635-6.

Gray D, Liu W, Shen C, Bhadriraju K, Nelson C, and Chen C, 2008, "Engineering amount of cell–cell contact demonstrates biphasic proliferative regulation through RhoA and the actin cytoskeleton," Experimental Cell Research, 314:2846-2854.  PMCID: PMC2601564.

Shen C, Fu J and Chen C, 2008, "Patterning cell and tissue function," (Review), Cellular and Molecular Bioengineering, 1:15-23.

Raghavan S, Shen C, Desai R, Sniadecki N, Nelson C, and Chen C, 2010, "Decoupling diffusional from dimensional control of signaling in 3D culture reveals a novel role for myosin in tubulogenesis," Journal of Cell Science, 123:2877-83. PMCID: PMC2923566

Miller J, Shen C, Legant W, Baranski J, Blakely B and Chen C, 2010, "Bioactive hydrogels made from step-growth derived PEG-peptide macromers," Biomaterials, 31:3736-43.  PMCID: PMC2837100.

Leslie-Barbick J, Shen C, Chen C and West J, 2011, "Micron-scale spatially patterned, covalently immobilized VEGF on hydrogels accelerates endothelial tubulogenesis and increases cellular angiogenic responses," Tissue Eng Part A., 17:221-9. PMCID: PMC3011918

Shen C, Raghavan S, Xu Z, Baranski J, Yu X, Wozniak M, Miller J, Gupta M, Buckbinder L, and Chen CS, 2011, "Decreased cell adhesion promotes angiogenesis in a Pyk2-dependent manner," Experimental Cell Research, 317:1860-71. PMCID: PMC3123418

Shen C and Chen C, 2011, "Regulation of Capillary Morphogenesis by the Adhesive and Mechanical Microenvironment," (Book chapter), Stem Cells and Neovascularization in Tissue Engineering, (in press).

Sun, Z, Singh N, Mullican SE, Everett LJ, Li L, Yuan L, Liu X, Epstein JA, and Lazar MA,  2011, “Diet-induced lethality due to loss of HDAC3 in heart and skeletal muscle,” J. Biol. Chem, 286(38):33301-9. PMCID: PMC3190900

Saenz S, Siracusa M, Perrigoue J, Spencer S, Urban J, Tocker J, Budelsky A, Kleinschek M, Kastelein R, Kambayashi T, Bhandoola A, and Artis D, 2010, “IL25 elicits a multipotent progenitor cell population that promotes T(H)2 cytokine responses,” Nature, 464:1362-6. PMCID: PMC2861732

Hall J, Grainger J, Spencer S, and Belkaid Y, 2011, “The role of retinoic Acid in tolerance and immunity,” (Review), Immunity, 35:13-22.

Xu X*, Stern AM*, Liu Z, Kan B, and Zhu J, 2010, “Virulence regulator AphB enhances toxR transcription in Vibrio cholerae,” BMC Microbiology, 10:3. PMCID: PMC2806343. (* Co-first authors)

Stern AM, Hsiao A, and Zhu J, 2011, “Negative regulation during bacterial infection,” (Book Chapter), In Vasil M and A Darwin (Ed.), Regulation of Bacterial Virulence. American Society for Microbiology Press: Washington, DC (In press).

Steger DJ, Lefterova MI, Ying L, Stonestrom AJ, Schupp M, Zhuo D, Vakoc AL, Kim JE, Chen J, Lazar MA, Blobel GA, and Vakoc CR,  2008, "DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells," Mol Cell Biol., 8:2825-39. PMCID: PMC2293113

Mei Y, Yong J, Stonestrom A, Yang X, 2010 "tRNA and cytochrome c in cell death and beyond," (Review) Cell Cycle, 15:2936-9. PMCID: PMC2983467

Mei Y, Stonestrom A, Hou YM, and Yang X, 2010, "Apoptotic regulation and tRNA," (Review), Protein Cell, 9:795-801. PMCID: PMC2992325

Musunuru K, Strong A, Frank-Kamenetsky M, Lee NE, Ahfeldt T, Sachs KV, Li X, Li H, Kuperwasser N, Ruda VM, Pirruccello JP, Muchmore B, Prokunina-Olsson L, Hall JL, Schadt EE, Morales CR, Lund-Katz S, Phillips MC, Wong J, Cantley W, Racie T, Ejebe KG, Orho-Melander M, Melander O, Koteliansky V, Fitzgerald K, Krauss RM, Cowan CA, Kathiresan S, and Rader DJ, 2010, “From Noncoding Variant To Phenotype Via SORT1 At The 1p13 Cholesterol Locus,” Nature, Vol. 466, 714-719. PMCID: PMC3062476

Dang L, White D, Gross S, Bennett B, Bittinger M, Driggers E, Fantin V, Jang H, Jin S, Keenan M, Marks K, Prins R, Ward P, Yen K, Liau L, Rabinowitz J, Cantley L, Thompson C, Vander Heiden M and Su S, 2009, "Cancer-Associated IDH1 Mutations Produce 2-Hydroxyglutarate," Nature, 462:739-744.  PMCID:  PMC2818760

Ward P, Patel J, Wise D, Abdel-Wahab O, Bennett B, Coller H, Cross J, Fantin V, Hedvat C, Perl A, Rabinowitz J, Carroll M, Su S, Sharp K, Levine R and Thompson C, 2010, "The Common Feature of Leukemia-Associated IDH1 and IDH2 Mutations is a Neomorphic Enzyme Activity Converting α Ketoglutarate to 2-Hydroxyglutarate,"  Cancer Cell, 17:225-234.  PMCID:  PMC2849316

Figueroa M, Abdel-Wahab O, Lu C, Ward P, Patel J, Shih A, Li Y, Bhagwat N, Vasanthakumar A, Fernandez H, Tallman M, Sun Z, Wolniak K, Peeters J, Liu W, Choe S, Fantin V, Paietta E, Löwenberg B, Licht J, Godley L, Delwel R, Valk P, Thompson C, Levine R and Melnick A, 2010, "Leukemic IDH1 and IDH2 Mutations Result in a Hypermethylation Phenotype, Disrupt TET2 Function, and Impair Hematopoietic Differentiation,"  Cancer Cell, 18:553-67. 

Mallory MJ, Jackson J, Weber B, Chi A, Heyd F, and Lynch KW, 2011, “Signal- and development-dependent alternative splicing of LEF1 in T cells is controlled by CELF2,” Mol. Cell. Biol., 31(11):2184-95. PMCID: PMC3133246

Weber BN*, Chi AW*, Chavez A, Yashiro-Ohtani Y, Yang Q, Shestova O, and Bhandoola A, 2011, “A critical role for TCF-1 in T-lineage specification and differentiation,” Nature, 476(7358):63-8. PMCID: PMC3156435. (* Co-first authors)

Chi AW, Chavez A, Xu L, Weber BN, Shestova O, Schaffer A, Wertheim G, Pear WS, Izon D, and Bhandoola A, 2011, “Identification of Flt3+CD150– myeloid progenitors in adult mouse bone marrow that harbor T lymphoid developmental potential,” Blood (In press). PMC Journal in process.

Pfaff J, Wilen C, Harrison J, Demarest J, Lee B, Doms R, and Tilton J, 2010, “HIV-1 resistance to CCR5 antagonists associated with highly efficient use of CCR5 and altered tropism on primary CD4+ T cells,” Journal of Virology, 84, 6505-14. PMCID: PMC2903254

Tilton J, Wilen C, Didigu C, Sinha R, Harrison J, Agrawal-Gamse C, Henning E, Bushman F, Deeks S, and Doms R, 2010, “A maraviroc-resistant HIV-1 with narrow cross-resistance to other CCR5 antagonists depends on both N-terminal and extracellular loop domains of drug-bound CCR5,” Journal of Virology, 84, 10863-76.  PMCID:  PMC2950574

Wilen C, Wang J, Tilton J, Miller J, Kim K, Rebar E, Sherrill-Mix S, Patro S, Secreto A, Jordan A, Lee G, Kahn J, Aye P, Bunnell B, Lackner A, Hoxie J, Danet-Desnoyers G, Bushman FD, Riley J, Gregory P, June C, Holmes M, and Doms R, 2011, “Engineering HIV-resistant human CD4+ T cells with CXCR4-specific zinc finger nucleases,” Plos Pathogens, 7(4):e1002020. PMCID: PMC3077364.

Wilen C, Parrish N, Pfaff J, Decker J, Henning E, Haynes B, Tilton J, Shaw G, Hahn B, and Doms R, 2011, “Phenotypic comparison of clade B transmitted/founder and chronic HIV-1 Envs,” Journal of Virology, 85(17):8514-27. PMCID: PMC3165820

Jiang C*, Parrish NF*, Wilen CB*, Li H, Chen Y, Pavlicek JW, Berg A, Lu X, Song H, Tilton JC, Pfaff JM, Henning EA, Decker JM, Moody MA, Drinker MS, Schutte R, Freel S, Tomaras GD, Nedellec R, Mosier DE, Haynes BF, Shaw GM, Hahn BH, Doms RW, and Gao F, 2011, “Primary infection by a human immunodeficiency virus with atypical coreceptor tropism,” Journal of Virology, 85(20):10669-81. PMCID: PMC3187499 (* Co-first authors)

Wilen C, Tilton J, and Doms R, 2011, “HIV binding and entry,” Cold Spring Harbor Perspectives in Medicine (in press).  PMC Journal in process.

Wilen C, Tilton J, and Doms R, 2011, “Molecular mechanisms of HIV entry” (Review), Viral Molecular Machines, (in press).  PMC Journal in process.

King CE, Wang L, Winograd R, Madison BB, Mongroo PS, Johnstone CN, and Rustgi AK, 2011, “LIN28B fosters colon cancer migration, invasion and transformation through let-7-dependent and -independent mechanisms,” Oncogene, 30(40):4185-93. PMCID: PMC3165068

Charkoudian LK, Dentchev T, Lukinova N, Wolkow N, Dunaief JL, and Franz KJ, 2008, “Iron prochelator BSIH protects retinal pigment epithelial cells against cell death induced by hydrogen peroxide,” J. Inorg. Biochem., 102(12): 2130-5. PMCID: PMC2662444.

Lukinova N, Iacovelli J, Dentchev T, Wolkow N, Hunter A, Amado D, Ying GS, Sparrow JR,and Dunaief JL, 2009,”Iron chelation protects the retinal pigment epithelial cell line ARPE-19 against cell death triggered by diverse stimuli,” Invest. Ophthalmol. Vis. Sci., 50(3):1440-7. PMCID: PMC2665187.

Hadziahmetovic M, Song Y, Wolkow N, Grieco S, Iacovelli J, Lee J, Lyubarsky A, Pratico D, Connelly J, Spino M, Harris ZL, and Dunaief JL, 2011, “Oral iron chelator deferiprone protects against iron overload induced retinal degeneration,” Invest. Ophthalmol. Vis. Sci., 16;52(2):959-68.

Iacovelli J, Zhao C, Wolkow N, Veldman P, Gollomp K, Ojha P, Lukinova N, King A, Feiner L, Esumi N, Zack DJ, Pierce EA, Vollrath D, and Dunaief JL, 2011, “Generation of cre transgenic mice with postnatal RPE-specific ocular expression,” Invest. Ophthalmol. Vis. Sci., 52(3):1378-83. PMCID: PMC3101664

Hadziahmetovic M, Song Y, Wolkow N, Iacovelli J,  Kautz L, Roth MP, and Dunaief JL, 2011, “Bmp6 regulates retinal iron homeostasis and has altered expression in age-related macular degeneration," Am. J. Pathol., 179(1):335-48. PMCID: PMC3123855

Leed MGD, Wolkow N, Pham DM, Daniel CL, Dunaief JL and Franz KJ, 2011,“Prochelators Triggered by Hydrogen Peroxide Provide Hexadentate Iron Coordination to Impede Oxidative Stress,” J. Inorg. Biochem., 105 (9): 1161-1172.  PMCID: PMC3123855

Wolkow N, Song Y, Wu T, Qian J, Guerquin-Kern J, and Dunaief JL, 2011, “Aceruloplasminemia: Retinal Histopathology and Iron-mediated Melanosome Degradation,” Arch. Ophthalmol., 129(11):1466-74.

Wong WJ, and Simon MC, 2009, "The role of MXI1 in VHL deficient tumorigenesis," (Review), Cancer Biol Ther., 7(10):1628-9. PMCID: PMC3141207

Majmundar AJ , Wong WJ, and Simon MC, 2010, "Hypoxia-inducible factors and the response to hypoxic stress," (Review), Mol Cell, 40(2):294-309. PMCID: PMC3143508

Marzec M, Liu X, Wong W, Yang Y, Pasha T, Kantekure K, Zhang P, Woetmann A, Cheng M, Odum N, and Wasik MA, 2011, "Oncogenic kinase NPM/ALK induces expression of HIF1α mRNA," Oncogene, 30(11):1372-8.

Zong Y Panikkar A, Xu J, Antoniou A, Raynaud P, Lemaigre F, and Stanger BZ, 2009, "Notch signaling controls liver development by regulating biliary differentiation," Development 136:1727-39. PMCID: PMC2673761

Zheng R, and Blobel GA, 2010, “GATA Transcription Factors and Cancer,” (Review), Genes and Cancer, 1 (12): 1178-88. PMCID: PMC3092280

Clarke TB, Davis KM, Lysenko ES, Zhou AY, Yu Y, and Weiser JN, 2010. "Recognition of peptidogylcan from the microbiota by Nod1 enhances systemic innate immunity," Nature Medicine, 16(2):228-31.

Sambandam A, Bell J, Schwarz B, Zediak V, Chi A, Zlotoff D, Krishnamoorthy S, Burg J, and Bhandoola A, 2008, "Progenitor migration to the thymus and T cell lineage commitment," (Review), Immunol Res., 42:65-74.

Zlotoff D, Schwarz B, and Bhandoola A, 2008, "The long road to the thymus: the generation, mobilization, and circulation of T cell progenitors in mouse and man, (Review), Semin Immunopathol., 30:371-382.

Chi A, Bell J, Zlotoff D, and Bhandoola A, 2009, "Untangling the T branch of the hematopoiesis tree," (Review), Curr Opin Immunol., 21:121-126. PMCID: PMC2676219

Zlotoff D, Sambandam A, Logan T, Bell J, Schwarz B, and Bhandoola A, 2010, "CCR7 and CCR9 together recruit hematopoietic progenitors to the adult thymus," Blood, 115:1897-1905. PMCID: PMC2837318

Sultana D, Bell J, Zlotoff D, De Obaldia M and Bhandoola A, 2010, "Eliciting the T cell fate with Notch," (Review), Semin Immunol., 22:254-260. PMCID: PMC2929278

Zlotoff D and Bhandoola A, 2011, "Hematopoietic progenitor migration to the adult thymus," (Review), Ann N Y Acad Sci, 1217:122-138. PMCID: PMC3076003

Zlotoff DA, Zhang SL, De Obaldia ME, Hess PR, Todd SP, Logan TD, and Bhandoola A., 2011, " Delivery of progenitors to the thymus limits T-lineage reconstitution after bone marrow transplantation.," Blood 118(7):1962-70. PMCID: PMC3158723

Kambayashi T, Baranski J, Baker R, Zou T, Allenspach E, Shoag J, Jones P, and Koretzky G, 2008, “Indirect involvement of allergen-captured mast cells in antigen presentation,” Blood, 111(3):1489-96. PMCID: PMC2214744

Blackburn S, Shin H, Haining W, Zou T, Workman C, Polley A, Betts M, Freeman G, Vignali D, and Wherry E, 2009, “Coregulation of CD8+ T cell exhaustion by multiple inhibitory receptors during chronic viral infection,” Nature Immunology, 10(1):29-37. PMCID: PMC2605166

Kambayashi T, Allenspach E, Chang J, Zou T, Shoag J, Reiner S, Caton A, and Koretzky G, 2009, “Inducible MHC class II expression by mast cells supports effector and regulatory T cell activation,” Journal of Immunology, 182(8):4686-95. PMCID: PMC2922395

Thiel A, Blessington P, Zou T, Feather D, Wu X, Yan J, Zhang H, Liu Z, Ernst P, Koretzky G, and Hua X, 2010, “MLL-AF9-induced leukemogenesis requires coexpression of the wild-type Mll allele,” Cancer Cell, 17(2):148-59. PMCID: PMC2830208

Zou T, Caton A, Koretzky G, and Kambayashi T, 2010, “Dendritic cells induce regulatory T cell proliferation through antigen-dependent and -independent interactions,” Journal of Immunology, 185(5):2790-9.

Smith-Garvin J, Burns J, Gohil M, Zou T, Kim J, Maltzman J, Wherry E, Koretzky G, and Jordan MS, 2010, “T-cell receptor signals direct the composition and function of the memory CD8+ T-cell pool,” Blood, 116(25):5548-59. PMCID: PMC3031403

Zou T, May R, and Koretzky G, 2010, “Understanding signal integration through targeted mutations of an adapter protein,” (Review), FEBS Letters, 584(24):4901-9. PMCID: PMC3008419

Riese M, Grewal J, Das J, Zou T, Patil V, Chakraborty A, and Koretzky G, 2011, “Decreased diacylglycerol metabolism enhances ERK activation and augments CD8+ T cell functional responses,” Journal of Biological Chemistry, 286(7):5254-65. PMCID: PMC3037638

Gordon S, Carty S, Kim J, Zou T, Smith-Garvin J, Alonzo E, Haimm E, Sant'Angelo D, Koretzky G, Reiner S, and Jordan M, 2011, “Requirements for eomesodermin and promyelocytic leukemia zinc finger in the development of innate-like CD8+ T cells,” Journal of Immunology, 186(8):4573-8. PMCID: PMC3085897