Graciela Gonzalez-Hernandez

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Associate Professor of Informatics in Biostatistics and Epidemiology
Department: Biostatistics and Epidemiology

Contact information
The Perelman School of Medicine
University of Pennsylvania
404 Blockley Hall
423 Guardian Drive
Philadelphia, PA 19104-6021
Office: 215-746-1101
Education:
BS (Computer Science)
University of Texas, 1992.
MS (Computer Systems Engineering)
University of Texas, 1994.
PhD (Computer Systems Engineering)
University of Texas, 2000.
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Selected Publications

Sarker Abeed, O'Connor Karen, Ginn Rachel, Scotch Matthew, Smith Karen, Malone Dan, Gonzalez Graciela: Social Media Mining for Toxicovigilance: Automatic Monitoring of Prescription Medication Abuse from Twitter. Drug safety 39(3): 231-240, March 2016.

Paul MJ, Sarker A, Brownstein JS, Nikfarjam A, Scotch M, Smith KL, Gonzalez G: Social Media Mining for Public Health Monitoring and Surveillance. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 21: 581-592, Jan 2016 Notes: proceeding represents original peer-reviewed research.

Korkontzelos I, Nikfarjam A, Shardlow M, Sarker A, Ananiadou S, Gonzalez G: Improving extraction of adverse drug reactions from tweets and forum posts using sentiment analysis features. Journal of Biomedical Informatics 62: 148-58, Aug 2016.

Leaman R., Wojtulewicz L, Sullivan R, Skariah A, Yang J, Gonzalez G: Towards internet-age pharmacovigilance: extracting adverse drug reactions from user posts to health-related social network. Proceedings of the 2010 Workshop on Biomedical Natural Language Processing (BioNLP), Association for Computational Linguistics (ACL) Page: 117-125, Jul 2010 Notes: proceeding represents original peer-reviewed research.

Nikfarjam Azadeh, Gonzalez Graciela H: Pattern mining for extraction of mentions of Adverse Drug Reactions from user comments. AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2011: 1019-26, 2011 Notes: proceeding represents original peer-reviewed research.

O'Connor Karen, Pimpalkhute Pranoti, Nikfarjam Azadeh, Ginn Rachel, Smith Karen L, Gonzalez Graciela: Pharmacovigilance on twitter? Mining tweets for adverse drug reactions. AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2014: 924-33, 2014 Notes: proceeding represents original peer-reviewed research.

Sullivan Ryan, Sarker Abeed, O'Connor Karen, Goodin Amanda, Karlsrud Mark, Gonzalez Graciela: Finding potentially unsafe nutritional supplements from user reviews with topic modeling. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 21: 528-39, Jan 2016 Notes: proceeding represents original peer-reviewed research.

Sarker Abeed, Gonzalez Graciela: Portable automatic text classification for adverse drug reaction detection via multi-corpus training. Journal of biomedical informatics 53: 196-207, Feb 2015.

Sarker Abeed, Ginn Rachel, Nikfarjam Azadeh, O'Connor Karen, Smith Karen, Jayaraman Swetha, Upadhaya Tejaswi, Gonzalez Graciela: Utilizing social media data for pharmacovigilance: A review. Journal of biomedical informatics 54: 202-12, Apr 2015.

Nikfarjam Azadeh, Sarker Abeed, O'Connor Karen, Ginn Rachel, Gonzalez Graciela: Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features. Journal of the American Medical Informatics Association : JAMIA 22(3): 671-81, May 2015.

Weissenbacher Davy, Tahsin Tasnia, Beard Rachel, Figaro Mari, Rivera Robert, Scotch Matthew, Gonzalez Graciela: Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinformatics (Oxford, England) 31(12): i348-56, Jun 2015 Notes: proceeding represents original peer-reviewed research.

4Tahsin T, Weissenbacher D, Rivera R, Beard R, Firago M, Wallstrom G, Scotch M, Gonzalez G; : A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. Journal of the American Medical Informatics Association 23(5): 934-41, Sep 2016.

Furniss Stephanie K, Yao Robert, Gonzalez Graciela: Automatic gene prioritization in support of the inflammatory contribution to Alzheimer's disease. AMIA Joint Summits on Translational Science proceedings AMIA Summit on Translational Science 2014: 42-7, 2014 Notes: proceeding represents original peer-reviewed research.

Gonzalez Graciela, Uribe Juan C, Tari Luis, Brophy Colleen, Baral Chitta: Mining gene-disease relationships from biomedical literature: weighting protein-protein interactions and connectivity measures. Pacific Symposium on Biocomputing Page: 28-39, 2007 Notes: proceeding represents original peer-reviewed research.

Nikfarjam Azadeh, Emadzadeh Ehsan, Gonzalez Graciela: Towards generating a patient's timeline: extracting temporal relationships from clinical notes. Journal of biomedical informatics 46 Suppl: S40-7, Dec 2013.

Jonnalagadda S, Gonzalez G: Can distributional statistics aid clinical concept extraction? Proceedings of the 2010 i2b2/VA Workshop on Challenges in Natural Language Processing for Clinical Data 2010 Notes: proceeding represents original peer-reviewed research.

Sullivan Ryan, Yao Robert, Jarrar Randa, Buchhalter Jeffrey, Gonzalez Graciela: Text Classification towards Detecting Misdiagnosis of an Epilepsy Syndrome in a Pediatric Population. AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2014: 1082-7, 2014 Notes: proceeding represents original peer-reviewed research.

Gonzalez Graciela H, Tahsin Tasnia, Goodale Britton C, Greene Anna C, Greene Casey S: Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery. Briefings in bioinformatics 17(1): 33-42, Jan 2016.

Hakenberg Jörg, Gerner Martin, Haeussler Maximilian, Solt Illés, Plake Conrad, Schroeder Michael, Gonzalez Graciela, Nenadic Goran, Bergman Casey M: The GNAT library for local and remote gene mention normalization. Bioinformatics (Oxford, England) 27(19): 2769-71, Oct 2011.

Lee Jang H, Gonzalez Graciela H: Towards integrative gene prioritization in Alzheimer's disease. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing Page: 4-13, 2011 Notes: proceeding represents original peer-reviewed research.

Jonnalagadda Siddhartha, Gonzalez Graciela: BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction. AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2010: 351-5, 2010 Notes: proceeding represents original peer-reviewed research.

Hakenberg Jörg, Plake Conrad, Leaman Robert, Schroeder Michael, Gonzalez Graciela: Inter-species normalization of gene mentions with GNAT. Bioinformatics (Oxford, England) 24(16): i126-132, Aug 2008.

Leaman Robert, Gonzalez Graciela: BANNER: an executable survey of advances in biomedical named entity recognition. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing Page: 652-63, 2008 Notes: proceeding represents original peer-reviewed research.

Sullivan R, Leaman R, and Gonzalez G: The DIEGO Lab Graph Based Gene Normalization System. International Conference on Machine Learning and Applications and Workshops (ICMLA) Page: 78-83, Dec 2011 Notes: proceeding represents original peer-reviewed research.

Jonnalagadda SR, Leaman R, Coehn T*, Gonzalez G: A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. Proceedings of the 11th International Conference on Intelligent Text Processing and Computational Linguistics, CICLing 2010 Page: 224-235, 2010 Notes: proceeding represents original peer-reviewed research.

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Last updated: 05/12/2017
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