Mahdi Sarmady, PhD

faculty photo
Assistant Professor of Clinical Pathology and Laboratory Medicine
Department: Pathology and Laboratory Medicine

Contact information
3615 Civic Center Blvd
Abramson Pediatrics Research Center
Room 710A
Philadelphia, PA 19104
Office: 267-426-1373
Education:
BSc (Software Engineering)
University of Tehran, 2005.
MSc (Software Engineering)
University of Tehran, 2007.
PhD (Bioinformatics)
Drexel University, 2010.
Permanent link
 
> Perelman School of Medicine   > Faculty   > Details

Selected Publications

Lurier, EB, Dalton, D, Dampier, W, Raman, P, Nassiri, S, Ferraro, NM, Rajagopalan, R, Sarmady, M, Spiller, KL: Transcriptome analysis of IL-10-stimulated (M2c) macrophages by next-generation sequencing. Immunobiology Feb 2017 Notes: DOI:10.1016/j.imbio.2017.02.006.

Lurier, EB, Dalton, D, Dampier, W, Ferraro, N, Nassiri, S, Raman, P, Rajagopalan, R, Sarmady, M, Spiller, KL: Role of IL10-stimulated "M2c" macrophages in early stages of wound healing. Tissue Engineering 22(1): S27-S28, Dec 2016 Notes: 2016 TERMIS Americas, San Diego CA, Platform presentation.

Wu, C, Cao, K, Jayaraman, P, Conlin, LK, Luo, M, Duhk, MC, Yu, Z, Spinner, NB, Santani, AB, Abou Tayoun, AN, Krock, BL, Sarmady, M: Evolution of a clinical exome sequencing bioinformatics pipeline in pediatrics: improvements, validation, challenges. Journal of Molecular Diagnostics 18(6): 993, Nov 2016 Notes: Association for Molecular Pathology (AMP) 2016 Annual Meeting, Charlotte NC, Platform presentation.

Chang, F, Lin, F, Zhao, X, Thiess, M, Cao, K, Akgumus, GT, Sarmady, M, Li, MM: Comprehensive genomic profiling of childhood cancers using targeted next-generation sequencing. Journal of Molecular Diagnostics 18(6): 1018, Nov 2016 Notes: Association for Molecular Pathology (AMP) 2016 Annual Meeting, Charlotte NC, Poster presentation.

Amr, S, Turki, S, Lebo, M, Sarmady, M, Rehm H, Abou, Tayoun AN: Using large sequencing data sets to refine intragenic disease regions and prioritize clinical variant interpretation. Genetics in Medicine : Official Journal of the American College of Medical Genetics Sep 2016 Notes: DOI: 10.1038/gim.2016.134.

Fan, JB, Mulchandani, S, Dulik, M, Chen, JY, Gleason, A, Jayaraman, P, Sarmady, M, Zackai, E, Luo, MJ, Spinner, NB, Conlin, L: Assessing copy number variants involving ACMGG secondary finding genes identified by routine chromosomal SNP array in a clinical pediatric population. Cancer Genetics 209(5): 230, May 2016 Notes: The 13th ICHG Meeting, Kyoto Japan.

Kelsen, JR, Dawany, N, Moran, CJ, Petersen, BS, Sarmady, M, Sasson, A, Pauly-Hubbard, H, Martinez, A, Maurer, K, Soong, J, Rappaport, E, Franke, A, Keller, A, Winter, HS, Mamula, P, Piccoli, D, Artis, D, Sonnenberg, GF, Daly, M, Sullivan, KE, Baldassano, RN, Devoto, M: Exome sequencing analysis reveals variants in primary immunodeficiency genes in patients with very early onset inflammatory bowel disease Gastroenterology 149(6): 1415-1424, Nov 2015.

Nesbitt A, Bhoj E, Gibson K, Denenberg E, Sarmady M, Cao K, Tischler T, Dubbs H, Zackai E, Santani A: Exome sequencing expands the mechanism of SOX5-associated intellectual disability: A case presentation with review of sox-related disorders. American Journal of Medical Genetics. Part A 167A(11): 2548-54, Nov 2015.

Wu, C, Cao, K, Jayaraman, P, Deardorff, MA, Krantz, ID, Spinner, NB, Santani, AB, Sarmady, M: Efficient interpretation of clinical exomes using a network-based approach. Journal of Molecular Diagnostics 17(6): 798-799, Nov 2015 Notes: Association for Molecular Pathology (AMP) 2015 Annual Meeting, Austin TX, Platform presentation.

Wu, C, Deardorff, MA, Sarmady, M: Random walk on ontology for rare disorder diagnosis. American Society of Human Genetics (ASHG) Conference 2015 Oct 2015 Notes: Baltimore MD, Poster presentation.

back to top
Last updated: 09/27/2017
The Trustees of the University of Pennsylvania