Aalim M. Weljie, Ph.D.

faculty photo
Associate Professor of Systems Pharmacology and Translational Therapeutics
Member, Center of Excellence in Environmental Toxicology
Member, Institute of Translational Medicine and Therapeutics
Member, Circadian and Sleep Institute
Department: Systems Pharmacology and Translational Therapeutics

Contact information
10-113 Smilow Center for Translational Research
3400 Civic Center Blvd, Bldg 421
Philadelphia, PA 19104
Office: 215-573-8085
Lab: 215-898-2220
Education:
B.Sc. (Chemistry; Certificate in Engineering)
Mount Allison University, 1996.
Ph.D. (Biochemistry)
University of Calgary, 2002.
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Description of Research Expertise

The Weljie Lab is at the forefront of understanding systems level changes in metabolism in a translational medicine context, particularly related to sleep and circadian rhythms. We are in the Department of Systems Pharmacology and Translational Therapeutics within the Perelman School of Medicine at the University of Pennsylvania. Our primary approaches use metabolomics technologies such as mass spectrometry (MS) and nuclear magentic resonance spectroscopy (NMR) for steady state metabolite measurements, stable isotope tracing of substrate metabolites, and MS imaging approaches using desorption electrospray ionization (DESI)-MS.

Metabolomics is a growing sub-field of systems biology centered on the study of small biological molecules in biological fluids and tissues. Recent research demonstrates that analysis of metabolite concentrations in living systems is useful in disease diagnosis, prognosis, and predicting drug efficacy in a personalized medicine context.

There is an intrinsic link between metabolism and function of the innate circadian clock system in numerous organisms and disease states, but the exact mechanism by which the clock controls mammalian metabolism is poorly understood. Our work seeks to fill this knowledge gap along with a particular emphasis on understanding the relationship of the clock with sleep, cancer and environmental health.

Selected Publications

Rodriguez A, Luong J, Belfer SJ, Shcherbakova O, Durkin J, Kain P, Sengupta A, Perlegos AE, Akhtar F, Boehmler DJ, Jin Z, Weljie AM, Bonini NM, Kayser MS.: Peripheral metabolic dysfunction drives sleep disruption in TDP-43 proteinopathy. bioRxiv May 2026.

Boehmler DJ, Baron RJ, Brain JA, Islam A, Kim Y, Gurevich A, Perkons NR, Zavriyev AI, Amin R, Andrew-Udoh J, Tuzneen Supan E, El Ghazal R, Hunt SJ, McClung G, Tischfield D, Ackerman D, Weljie AM, Weinfurtner K, Skuli N, Gade TPF.: Locoregional lactate dehydrogenase inhibition potentiates therapy and overcomes treatment resistance in hepatocellular carcinoma. Hepatology Apr 2026.

Malik DM, Kain P, Rhoades SD, Sengupta A, Zhang SL, Barber A, Haynes P, Arnardottir ES, Pack A, Kibbey RG, Sehgal A, Weljie AM.: Glucose is dynamically regulated by time of day in humans and Drosophila. PLoS Biol 24: e3003717, Apr 2026.

Ghosh S, Lahens NF, Barekat K, Tang SY, Theken KN, Ricciotti E, Sengupta A, Joshi R, Hu W, Bushman FD, Weljie A, Grosser T, FitzGerald GA.: Depression of tryptophan may contribute to adverse effects of naproxen. Nat Commun 17: 2776, Feb 2026.

Barekat K, Ghosh S, Herrmann C, Keat K, Assenmacher CA, Tanes C, Wilson N, Lordan R, Mrčela A, Rauova L, Sengupta A, Das US, Joshi R, Friedman E, Ritchie MD, Bittinger K, Weljie A, Cadwell K, Bushman FD, Wu GD, FitzGerald GA, Ricciotti E.: Concomitant COX-1 and COX-2 suppression is not sufficient to induce enteropathy associated with chronic NSAID use. J Clin Invest 136: e190575, Jan 2026.

Skarke C, Lahens NF, Mrčela A, Olsson N, Glessner J, Naik A, Theken KN, Chivily C, Douglas D, Hess KN, Gaun A, Moustafa AM, Daniel SG, Bittinger K, Teegarden S, Lordan R, Jamal NE, Meng H, Hollingsworth T, Woolfork A, Sengupta A, Brooks TG, Weljie A, Grant G, O'Brien J, McAllister F, Melamud E, FitzGerald GA.: Age and the Diurnal Oscillatory Features of the Human Chronobiome. medRxiv Jan 2026.

Rennick-Zuefle K, Weljie AM, Kain P.: The interplay of insulin signaling and neurotransmitters on sleep in Drosophila. Front Neuroendocrinol 2026.

Joshi R, Tang SY, Das US, Boehmler DJ, Mrčela A, Lordan R, Petersson EJ, Weljie AM, FitzGerald GA.: Multimodal landscape of atherosclerotic plaques: A spatial omics approach with mass spectrometry imaging. Anal Chim Acta 1379: 344723, Dec 2025.

Boehmler DJ, Woolfork A, Tan AW, Sengupta A, Kain P, Patel OB, Akhtar F, McClung G, Ackerman D, Gade TP, Fitzgerald GA, Weljie AM.: MSI.EAGLE: An Open-Source GUI for Streamlined Mass Spectrometry Imaging Analysis. bioRxiv Sep 2025.

Akhtar F, Malik D, Sengupta A, Haynes P, Klok J, Sehgal A, Weljie AM.: Integrated Respirometry and Metabolomics Unveil Circadian Metabolic Dynamics in Drosophila. bioRxiv Jul 2025.

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Last updated: 06/10/2026
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