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James C. Gee, Ph.D.

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Associate Professor of Radiologic Science in Radiology
Director, Penn Image Computing and Science Laboratory, Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
Co-Director, Translational Biomedical Imaging Center, Institute of Translational Medicine and Therapeutics, University of Pennsylvania, Philadelphia, PA
Director, HHMI-NIBIB Interfaces Program in Biomedical Imaging and Informational Sciences, University of Pennsylvania, Philadelphia, PA
Director, Univ of Elec Sci and Tech of China - University of Pennsylvania Center Digital Health Innovation, Univ of Elec Sci and Tech of China, Chengdu, CN
Director, Center for Information Driven Radiology, University of Pennsylvania, Philadelphia, PA
Department: Radiology

Contact information
Richards - 6th Floor
3700 Hamilton Walk
Philadelphia, PA 19104-6116
Office: 215-746-6295
B.S. (Electrical Engineering)
University of Washington, 1987.
B.S. (Computer Science)
University of Washington, 1987.
M.S. (Electrical Engineering)
University of Washington, 1989.
Ph.D. (Computer and Information Science)
University of Pennsylvania, 1996.
Post-Graduate Training
Visiting Scholar, Laboratoire des Signaux et Images en Medecine, Faculte de Medecine, Universite de Rennes I,Rennes, France, 1994-1995.
Postdoctoral Fellow in Neurology and Computer and Information Science, University of Pennsylvania, 1996-1997.
Permanent link
> Perelman School of Medicine   > Faculty   > Details

Selected Publications

Allan Johnson, G., Wang, N., Anderson, R.J., Chen, M., Cofer, G.P., Gee, J.C., Pratson, F., Tustison, N., White, L.E.: Whole mouse brain connectomics. J Comp Neurol Page: doi: 10.1002/cne.24560, Oct 2018.

Tustison, N., Avants, B., Lin, Z., Feng, X., Cullen, N., Mata, J.F., Flors, L., Gee, J.C., Altes, T.A., Mugler Iii, J.P., Qing, K.: Convolutional Neural Networks with Template-Based Data Augmentation for Functional Lung Image Quantification. Acad Radiol. Elsevier, Inc. Page: S1076-6332(18)30387-8 doi: 10.1016/acra.2018.08.003, Sept 2018.

Olm, C.A., McMillan, C.T., Irwin, D.J., Van Deerlin, V.M., Cook, P.A., Gee, J.C., Grossman, M.; : Longitudinal structural gray matter and white matter MRI changes in presymptomatic progranulin mutation carriers. NuroImage: Clinical. Elsevier Inc.(19), 497-506, May 2018.

sifah, E.B., Xia, Q., Agyekum, K.O.-B.O., Amofa, S., Gao, J., Chen, R., Xia, H., Gee, J.C., Du, X., Guizani, M.: Chain-based bid data access control infrastructure. Journal of Supercomputing. Springer New York, LLC,(14), 1-20, March 2018.

Cook Philip A, Johnson Thomas M, Martin Suzanne G, Gehrman Philip R, Bhatnagar Seema, Gee James C: A Retrospective Study of Predictors of Return to Duty versus Medical Retirement in an Active Duty Military Population with Blast-Related Mild Traumatic Brain Injury. Journal of Neurotrauma 35(8): 991-1002, Mar 2018.

Xin Yi, Cereda Maurizio, Hamedani Hooman, Pourfathi Mehrdad, Siddiqui Sarmad, Meeder Natalie, Kadlecek Stephen, Duncan Ian, Profka Harrilla, Rajaei Jennia, Tustison Nicholas J, Gee James C, Kavanagh Brian P, Rizi Rahim R: Unstable Inflation Causing Injury: Insight from Prone Position and Paired CT Scans. American journal of respiratory and critical care medicine 198(2): 197-207, Feb 2018.

Medaglia, John D, Huang, Weiyu, Segarra, Santiago, Olm, Christopher, Gee, James, Grossman, Murray, Ribeiro, Alejandro, McMillan, Corey T, Bassett, Danielle S.: Brain network efficiency is influenced by the pathologic source of corticobasal syndrome. Neurology 89(13): 137-1387. doi: 10.1212/WNL.0000000000004324, Sep 2017.

Chen Min, Wang Jiancong, Oguz Ipek, VanderBeek Brian L, Gee James C: Automated segmentation of the choroid in EDI-OCT images with retinal pathology using convolution neural networks. Fetal, infant and ophthalmic medical image analysis : International Workshop, FIFI 2017, and 4th International Workshop, OMIA 2017, held in conjunction with MICCAI 2017, Quebec City, QC, Canada, September 14, Proceedings. FIFI (Workshop... 10554: 177-184, Sep 2017.

Cereda Maurizio, Xin Yi, Hamedani Hooman, Bellani Giacomo, Kadlecek Stephen, Clapp Justin, Guerra Luca, Meeder Natalie, Rajaei Jennia, Tustison Nicholas J, Gee James C, Kavanagh Brian P, Rizi Rahim R: Tidal changes on CT and progression of ARDS. Thorax 72(11): 981-989, Jun 2017.

O Sullivan Ryan, Tom Lisa M, Bunya Vatinee Y, Nyberg William C, Massaro-Giordano Mina, Daniel Ebenezer, Smith Eli, Brainard David H, Gee James, Maguire Maureen G, Stone Richard A: Use of Crossed Polarizers to Enhance Images of the Eyelids. Cornea 36(5): 631-635, May 2017.

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Last updated: 11/26/2018
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