Faculty & Staff

James C. Gee, Ph.D.

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Associate Professor of Radiologic Science in Radiology
Director, Penn Image Computing and Science Laboratory, Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
Co-Director, Translational Biomedical Imaging Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA
Director, HHMI-NIBIB Interfaces Program in Biomedical Imaging and Informational Sciences, University of Pennsylvania, Philadelphia, PA
Director, Chinese Academy of Sciences - University of Pennsylvania Center of Excellence in Brain Mapping, University of Pennsylvania, Philadelphia, PA
Department: Radiology

Contact information
Richards - 6th Floor
3700 Hamilton Walk
Philadelphia, PA 19104-6116
Office: 215-746-6295
Education:
B.S. (Electrical Engineering)
University of Washington, 1987.
B.S. (Computer Science)
University of Washington, 1987.
M.S. (Electrical Engineering)
University of Washington, 1989.
Ph.D. (Computer and Information Science)
University of Pennsylvania, 1996.
Post-Graduate Training
Visiting Scholar, Laboratoire des Signaux et Images en Medecine, Faculte de Medecine, Universite de Rennes I,Rennes, France, 1994-1995.
Postdoctoral Fellow in Neurology and Computer and Information Science, University of Pennsylvania, 1996-1997.
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Selected Publications

Showalter, B.L., DeLucca, J.F., Peloquin, J.M., Cortes, D.H., Yoder, J.H., Jacobs, N.T., Wright, A.C., Gee, J.C., Vresilovic, E.J., Elliott, D.M.: Novel human intervertebral disc strain template to quantify regional three-dimensional strains in a population and compare to internal strains predicted by a finite element model Journal of Orthopaedic Researchh. John Wiley and Sons, Inc. 34(7): 1264-1273, July 2016.

Olm, CA, Kandel, BM, Avants, BB, Detre, JA, Gee, JC, Grossman, M, McMillan, CT : Arterial spin labeling perfusion predicts longitudinal decline in semantic variant primary progressive aphasia Journal of Neurology. Elsevier, Page: 1-12, July 2016.

Kumar, M, Duda, JT, Yoon, SY, Bagel, J, O'Donnell, P, Vite, C, Pickup, S, Gee, JC, Wolfe, JH, Poptani, H: Diffusion tensor imaging for assessing brain gray and white matter abnormalities in a feline model of α-Mannosidosis Journal of Neuropathology and Experimental Neurology. Lippincott Williams and wilkins, 75(1): 34-43, March 2016.

Kini, LG, Gee, JC, Litt, B: Computational analysis in epilepsy neuroimaging: A survey of features and methods. NeuroImage: Clinical Elsevier, Inc. 11: 515-529, 2016.

Tustison, NJ, Shrinidhi, KL, Wintermark, M, Durst, CR, Kandel, BM, Gee, JC, Grossman, MC, Avants, BB: Optimal Symmetric Multimodal Templates and Concatenated Random Forests for Supervised Brain Tumor Segmentation (Simplified) with ANTsR. Neuroinformatics. Humana Press, Inc. 13(2): 209-225, November 2015.

Wu, J, Awate, SP, Licht, DJ, Clouchoux, C, DuPlessis, AJ, Avants, BB, Vossough, A, Gee, JC, Limperopoulos, C: Assessment of MRI-based automated fetal cerebral cortical folding measures in prediction of gestational age in the third trimester. American Journal of Neuroradilogy 36(7): 1369-1374, July 2015.

Ashtari, M, Zhang, H, Cook, PA, Cyckowski, LL, Shindler, KS, Marshall, KA, Aravand, P, Vossough, A, Gee, JC, Maguire, AM, Baker, CI, Bennett, J: Plasticity of the human visual system after retinal gene therapy in patients with Leber's congenital amaurosis. Science Translational Medicine 7(296): 296ra110, July 2015.

Zheng, Y, Keller, BM, Ray, S, Wang, Y, Conant, EF, Gee, JC, Kontos, D: Parenchymal texture analysis in digital mammography: A fully automated pipeline for breast cancer risk assessment. Medical Physics. AAPM-American Association of Physicists in Medicine, 42(7): 4921996, July 2015.

Kandel, B.M., Avants, B.,Gee, J.C.,Arnold, S.E.,Wolk, D.A. : Neuropsychological Testing Predicts Cerebrospinal Fluid Amyloid-β in Mild Cognitive Impairment Journal of Alzheimer's Disease 46(4): 901-912, June 2015.

Kandel, BM, Wang, DJJ, Gee, JC, Avants, BB: Eigenanatomy: Sparse dimensionality reduction for multi-modal medical image analysis. Methods 73: 43-53, February 2015.

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Last updated: 07/26/2016
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