Selected Publications

Balamuth, F., Weiss, S.L., Long, E., Thompson, G.C., Artis, A.S., Campos, A.B., Borland, M.L., Dalziel, S.R., Yock-Corrales, A., Singh, R., Williams, A., Mickiewicz, B., Hickey, C.P., Fitzgerald, J.C., Laskin, B.L., Hickey, R.W., Eckerle, M., Alqurashi, W., Alpern, E., Ambroggio, L., Badawy, M., Baumer-Mouradian, S., Berthelot, S., Clukies, L.D., Craig, S., Curtis, S.J., Davis, A.L., Duffy, S., Eisenberg, M.A., Emsley, J.G., Festekjian, A., George, S., Green, R., Gripp, K.E., Jain, P.G., Jani, S., Joubert, G.I., Judge, P., Kam, A., Kochar, A., Koutroulis, I., Kwok, M.Y., Lane, R.D., Lithgow, A., Lloyd, J., Mansour, K., McManemy, J.K., Morris, C., Phillips, N., Rao, A., Rogers, A., Sehgal, A., Shayan, Y., Silverman, J., Tan, E., Uspal, N.G., Vance, C., Whyte, E., Huang, J., Freedman, S.B., Babl, F.E., Kuppermann, N., PRoMPT BOLUS Investigators of the PECARN, PERC, and PREDICT Networks.: Balanced Fluid versus 0.9% Saline in Children Treated for Septic Shock. New England Journal of Medicine Epub ahead of print, Apr 2026.

Zhang, K., Zhou, R., Adhikarla, E., Yan, Z., Liu, Y., Yu, J., Liu, Z., Chen, X., Davison, B.D., Ren, H., Huang, J., Chen, C., Zhou, Y., Fu, S., Liu, W., Liu, T., Li, X., Chen, Y., He, L., Zou, J., Li, Q., Liu, H. and Sun, L.: A generalist vision-language foundation model for diverse biomedical tasks. Nature Medicine Page: 1-13, Aug 2024.

Shi, J., Zhou, Y. and Huang, J.: Unlocking the power of time-since-infection models: data augmentation for improved instantaneous reproduction number estimation. Biostatistics 26(1), Feb 2025.

Huang, J., Ning, Y., Reid, N. and Chen, Y.: On specification tests for composite likelihood inference. Biometrika 107(4): 907-917, Dec 2020.

Huang, J., Fisher, B.T., Tam, V., Wang, Z., Song, L., Shi, J., La Rochelle, C., Wang, X., Morris, J.S., Coffin, S.E. and Rubin, D.M.: The effectiveness of government masking mandates on COVID-19 county-level case incidence across the United States, 2020: study examines the effectiveness of US government masking mandates during a portion of the COVID-19 pandemic. Health Affairs 41(3): 445-453, Feb 2022.

Rhee, C., Balamuth, F., Dysart, K., Miller, E., Li, Z., Huang, J., Gunturi, D., Ostapenko, S., Jin, R., DelloStritto, L., Guy, J., Poland, R., Sands, K., Bennett, T.D., Scott, H.F., Alpern, E.R., Sanchez-Pinto, L.N., Russell, S., DeWitt, P.E., Rebull, M.N., Gray, C., Daniels, L., Otto, S., Carter, C., Cook, L.J., Tsemberis, E., Jordan, J.T., Kapes, J., Tunick, R., Kadri, S.S., Badesch, B.L., Chen, H.-C., Klompas, M. and Weiss, S.L.: National estimates of pediatric sepsis in US hospitals using clinical data. JAMA Published Online, Mar 2026.

Rubin, D., Huang, J., Fisher, B.T., Gasparrini, A., Tam, V., Song, L., Wang, X., Kaufman, J., Fitzpatrick, K., Jain, A., Griffs, H., Crammer, K., Morris J. and Tasian, G.: The association of social distancing, population density, and temperature with the SARS-CoV-2 instantaneous reproduction number in counties across the United States. JAMA Network Open 3(7): e2016099, Jul 2020.

Shi, J., Morris, J.S., Rubin, D. and Huang, J.: Development of an early-phase local model for pandemics using public health data: application to the covid-19 pandemic AMIA Annual Symposium Proceedings 2024: 1170-1179, Feb 2026.

Luan, X., Fisher, B.T., Coffin, S.E., Rubin, D., Matone, M. and Huang, J.: School masking and COVID-19 community transmission: a synthetic control study. Health Affairs Scholar 3(12): qxaf233, Dec 2025.

Huang, J. and Morris, J. S.: Infectious Disease Modeling. Annual Review of Statistics and Its Application 12(1): 19-44, Mar 2025.

Huang, J., Duan, R., Hubbard, R. A., Wu, Y., Moore, J. H., Xu, H. and Chen, Y.: PIE: A prior knowledge guided integrated likelihood estimation method for bias reduction in association studies using electronic health records data. Journal of the American Medical Informatics Association 25(3): 345-352, Mar 2018.

Zhou, Y., Shi, J., Stein, R., Liu, X., Baldassano, R. N., Forrest, C. B., Chen, Y. and Huang, J.: Missing data matter: an empirical evaluation of the impacts of missing EHR data in comparative effectiveness research. Journal of the American Medical Informatics Association 30(7): 1246–1256, July 2023.

Chen, Y., Huang, J., Ning, Y., Liang, K.-Y., and Lindsay, B. G.: A conditional composite likelihood ratio test with boundary constraints. Biometrika 105(1): 225-232, Mar 2018.

Huang, J., Cai, Y., Du, J., Li, R., Ellenberg, S. S., Hennessy, S., Tao, C. and Chen, Y.: Monitoring vaccine safety by studying temporal variation of adverse events using vaccine adverse event reporting system. The Annals of Applied Statistics 15(1): 252-269, Mar 2021.

Qiu, C., Hanson, R. L., Fufaa, G., Kobes, S., Gluck, C., Huang, J., Chen, Y., Raj, D., Nelson, R. G., Knowler, W. C. and Susztak, K.: Cytosine methylation predicts renal function decline in American Indians. Kidney International 93(6): 1417-1431, Jun 2018.

Gluck, C., Qiu, C., Han, S. Y., Palmer, M., Park, J., Ko, Y. A., Guan, Y., Sheng, X., Hanson, R. L., Huang, J., Chen, Y., Park, A. S. D., Izquierdo, M. C., Mantzaris, I., Verma, A., Pullman, J., Li, H. and Susztak, K.: Kidney cytosine methylation changes improve renal function decline estimation in patients with diabetic kidney disease. Nature Communications 10(1): 2461, Jun 2019.

Chen, A., Stein, R, Baldassano, R. N. and Huang, J.: Learning longitudinal patterns and subtypes of pediatric Crohn disease treated with infliximab via trajectory cluster analysis. Journal of Pediatric Gastroenterology and Nutrition 74(3): 383-388, Mar 2022.