Selected Publications

Romano JD: Ista: An Ontology-Driven Toolkit for Biomedical Knowledge Base Assembly. Studies in Health Technology and Informatics May 2025 Notes: Accepted; in-press.

Donnelly HK, Ashcraft LE, Romano JD, Daniels S, and Mowery D: Using Topic Modeling to Understand Implementation Science in the Biomedical Literature. AMIA 2025 Informatics Summit March 2025.

Nguyen TA & Romano JD: Uterine Leiomyoma Prediction using Geometric Deep Learning and Freely Available Electronic Health Record Data. AMIA 2025 Informatics Summit March 2025.

Pan IT, & Romano JD: Enhancing Molecular Representation Learning through the Combination of 3D and 2D Graph Machine Learning. The 39th Annual AAAI Conference on Artificial Intelligence 39, February 2025 Notes: (accepted; in press).

Haredasht FN, Kim D, Romano JD, Tison G, Daneshjou R, & Chen JH: Session Introduction: AI and Machine Learning in Clinical Medicine: Generative and Interactive Systems at the Human-Machine Interface. Pacific Symposium on Biocomputing 30: 33-39, Jan 2025.

Kumar R, Romano JD, & Ritchie MD: Network-based analyses of multiomics data in biomedicine. BioData Mining 2025 Notes: (accepted; in-press).

Kumar R, Romano JD, & Ritchie MD: CASTER-DTA: Equivariant Graph Neural Networks for Predicting Drug-Target Affinity. bioRxiv Nov 2024 Notes: (bioRxiv preprint ahead of publication).

Li R, Romano JD, Chen Y, & Moore JH: Centralized and Federated Models for the Analysis of Clinical Data. Annual Review of Biomedical Data Science 7: 179-199, August 2024.

Albi G, Dagliati A, Vavassori C, Pisani L, Bellazzi R, Romano JD, & Colombo GI: Classification of Coronary Artery Disease Severity by Combining Clinical and Gene Expression Variables. 22nd International Conference on Artificial Intelligence in Medicine 22, July 2024.

Romano JD, Truong V, Kumar R, Venkatesan M, Graham BE, Hao Y, Matsumoto N, Li X, Wang Z, Ritchie M, Shen L, & Moore JH: The Alzheimer's Knowledge Base: A Knowledge Graph for Alzheimer Disease Research. Journal of Medical Internet Research 26: e46777, April 2024.