Faculty

Carman Man-Chung Li, Ph.D.

faculty photo
Assistant Professor of Cancer Biology
Department: Cancer Biology
Graduate Group Affiliations

Contact information
421 Curie Blvd, BRB 752
Philadelphia, PA 19104
Education:
A.B. (Molecular Biology, High Honors)
Princeton University, 2009.
Ph.D. (Biology)
Massachusetts Institute of Technology, 2015.
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Description of Research Expertise

Why do people with certain inherited mutations have higher cancer risks, even at a young age? What can they teach us about the early drivers of cancer development, including in people not born with these mutations?

These “hereditary cancers”, caused by heterozygous loss-of-function mutations in tumor suppressor genes, impact multiple generations, and better prevention strategies are sorely needed. Emerging evidence from us and others indicates that this cancer predisposition cannot be fully explained by the prevailing “two-hit” hypothesis (i.e., carrying one instead of two copies of a protective gene simply increases a cell’s risk of completely losing the gene to suppress malignant transformation). Rather, the heterozygous state itself can cause cellular and molecular abnormalities that substantially elevate cancer risk, independent of full gene loss. Importantly, these abnormalities can also reveal the very early events that promote non-hereditary cancer formation.

Our lab investigates the causes and consequences of these heterozygosity-driven abnormalities (“gene-haploinsufficiency effects”) on hereditary cancer development and explores opportunities for early disease intervention. Insights from these studies can also shed light on the biology and early interception opportunities in non-hereditary cancers.

We combine genetically engineered mouse models, organoid cultures, and advanced omics analyses to study cancer development in a tractable and physiological manner. Our long-term goal is to build a unifying paradigm of hereditary cancers, with shared principles and disease-specific mechanisms.

Selected Publications

Li CM#, Cordes A, Oliphant M, Quinn SA, Thomas M, Selfors LM, Silvestri F, Zoeller JJ, Shapiro H, Tsiobikas C, Gupta K, Pathania S, Regev A, Kadoch C, Muthuswamy SK, Brugge JS# (# co-corresponding authors) : Brca1 haploinsufficiency promotes early tumor onset and epigenetic alterations in a mouse model of hereditary breast cancer. Nature Genetics 56(12): 2763-2775, November 2024.

Gray, GK*, Li, CM*, Rosenbluth, JM*, Selfors, LM*, Girnius, N, Lin, J-R, Schackmann, RCJ, Goh, WL, Moore, K, Shapiro, HK, Mei, S, D’Andrea, K, Nathanson, KL, Sorger, PK, Santagata, S, Regev, A, Garber, JE, Dillon, DA, Brugge, JS (* co-first authors, alphabetical): A human breast atlas integrating single-cell proteomics and transcriptomics. Developmental Cell 57(11): 1400-1420.e7, June 2022.

Rauner, G, Jin, DX, Miller, DH, Gierahn, TM, Li, CM, Sokol, ES, Feng, Y-X, Mathis, RA, Love, JC, Gupta, PB, Kuperwasser, C.: Breast tissue regeneration is driven by cell-matrix interactions coordinating multi-lineage stem cell differentiation through DDR1. Nature Communications 12(1): 7116, December 2021.

Li, CM, Shapiro, H, Tsiobikas, C, Selfors, LM, Chen, H, Rosenbluth, J, Moore, K, Gupta, KP, Gray, GK, Oren, Y, Steinbaugh, MJ, Guerriero, JL, Pinello, L, Regev, A, Brugge, JS.: Aging-associated alterations in mammary epithelia and stroma revealed by single-cell RNA sequencing, Cell Reports 33(13): 108566, December 2020.

Rosenbluth, JM, Schackmann, RCJ, Gray, GK, Selfors, LM, Li, CM, Boedicker, M, Kuiken, HJ, Richardson, A, Brock, J, Garber, J, Dillon, D, Sachs, N, Clevers, H, Brugge, JS.: Organoid cultures from normal and cancerprone human breast tissues preserve complex epithelial lineages. Nature Communications 11(1): 1711-14, April 2020.

Hamza, B, Ng, SR, Prakadan, SM, Delgado, FF, Chin, CR, King, EM, Yang, LF, Davidson, SM, DeGouveia, KL, Cermak, N, Navia, AW, Winter, PS, Drake, RS, Tammela, T, Li, CM, Papagiannakopoulos, T, Gupta, AJ, Bagnall, JS, Knudsen, SM, Heiden, MGV, Wasserman, SC, Jacks, T, Shalek, AK, Manalis, SR.: Optofluidic real-time cell sorter for longitudinal CTC studies in mouse models of cancer. PNAS 116(6): 2232-2236, February 2019.

Gocheva, V, Naba, A, Bhutkar, A, Guardia, T, Miller, KM, Li, CM, Dayton, TL, Sanchez-Rivera, FJ, Kim-Kiselak, C, Jailkhani, N, Winslow, MM, Rosario, AD, Hynes, RO, Jacks, T.: Quantitative proteomics identify Tenascin-C as a promoter of lung cancer progression and contributor to a signature prognostic of patient survival. PNAS 40(28): 201707054-E5634, July 2017.

Muzumdar, MD, Dorans, KJ, Chung, KM, Robbins, R, Tammela, T, Gocheva, V, Li, CM, Jacks, T.: Clonal dynamics following p53 loss of heterozygosity in Kras-driven cancers. Nature Communications 7(1): 12685, September 2016.

Li, CM, Gocheva, V, Oudin, MJ, Bhutkar, A, Wang, SY, Date, SR, Ng, SR, Whittaker, CA, Bronson, RT, Snyder, EL, Gertler, FB, Jacks, T.: Foxa2 and Cdx2 cooperate with Nkx2-1 to inhibit lung adenocarcinoma metastasis. Genes & Development 29(17): 1850-1862, September 2015.

Yu B-B, Moffatt BE, Fedorova M, Villiers CGS, Arnold JN, Du E, Swinkels A, Li CM, Ryan A, Sim RB: Purification, Quantification, and Functional Analysis of Complement Factor H. Methods in Molecular Biology 1100: 207–223, October 2013.

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Last updated: 08/11/2025
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