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Rui Xiao, Ph.D.
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Professor of Biostatistics and Epidemiology at the Hospital of the University of Pennsylvania
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Department: Biostatistics and Epidemiology
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Graduate Group Affiliations
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Contact information
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CTH03-312, 3600 Civic Center Blvd
22 University of Pennsylvania
61 Department of Biostatistics, Epidemiology and Informatics
Philadelphia, PA 19104-6021
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22 University of Pennsylvania
61 Department of Biostatistics, Epidemiology and Informatics
Philadelphia, PA 19104-6021
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Office: 215 746 4474
32 Fax: 215 573 1050
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32 Fax: 215 573 1050
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Email:
rxiao@pennmedicine.upenn.edu
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rxiao@pennmedicine.upenn.edu
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Education:
21 9 B.S. 1e (Applied Chemistry) c
2a Peking University, 1997.
21 9 M.S. 16 (Chemistry) c
2a Peking University, 2000.
21 9 M.S. 17 (Statistics) c
38 North Carolina State University, 2003.
21 a Ph.D. 1a (Biostatistics) c
2f University of Michigan, 2009.
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Permanent link21 9 B.S. 1e (Applied Chemistry) c
2a Peking University, 1997.
21 9 M.S. 16 (Chemistry) c
2a Peking University, 2000.
21 9 M.S. 17 (Statistics) c
38 North Carolina State University, 2003.
21 a Ph.D. 1a (Biostatistics) c
2f University of Michigan, 2009.
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10d Zhang Q, Jiang S, Schroeder A, Hu J, Li K, Zhang B, Dai D, Lee EB, Xiao R, Li M.: CeLEry: a supervised deep learning method for cell location recovery. Nature Communications 14(1): 4050, Jul 2023.
f5 Fan J, Lyu Y, Zhang Q, Wang X, Li M#, Xiao R#.: MUSIC2: cell type deconvolution for multi-condition bulk RNA-seq data. Briefings in Bioinformatics 23(6): bbac430, Nov 2022.
110 Fan J, Wang X, Xiao R#, Li M#.: Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data. PLoS Genetics 17(3): e1009080, Mar 2021.
11f Hu J, Fung FW, Jacobwitz M, Parikh DS, Vala L, Donnelly M, Topjian AA, Abend NS, Xiao R.: Machine learning models to predict electroencephalographic seizures in critically ill children. Seizure 87: 61-68, Mar 2021.
124 Fan J, Hu J, Xue C, Zhang H, Susztak K, Reilly MP, Xiao R#, Li M#.: ASEP: gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. PLoS Genetics 16(5): e1008786, May 2020.
152 Ficicioglu C, Ahrens-Nicklas RC, Barch J, Cuddapah SR, DiBoscio BS, DiPerna JC, Gordon PL, Henderson N, Menello C, Luongo N, Ortiz D, Xiao R.: Newborn screening for Pompe disease: Pennsylvania experience. International Journal of Neonatal Screen 6(4): 89, Nov 2020.
16d Bonafide CP, Xiao R, Brady PW, Landrigan CP, Brent C, Wolk CB, Bettencourt A, Barg F, Beidas RS, Schondelmeyer A; Pediatric Research in Inpatient Settings (PRIS) Network.: Continuous pulse oximetry monitoring use in hospitalized children with bronchiolitis. JAMA 323(15): 1467-1477, Apr 2020.
13c Atkinson MA#, Xiao R#, Köttgen A, Wühl E, Wong CS, Wuttke M, Schaefer F, Warady BA, Furth SL.: Genetic associations of hemoglobin in children with chronic kidney disease in the PediGFR consortium. Pediatric Research 85(3): 324-328, Feb 2019.
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Selected Publications
19c Xiao R#, Bonafide CP#, Williams NJ, Cidav Z, Landrigan CP, Faerber J, Makeneni S, Wolk CB, Schondelmeyer AC, Brady PW, Beidas RS, Schisterman E. : Eliminating Monitor Overuse (EMO) type III effectiveness-deimplementation cluster-randomized trial: Statistical analysis plan. Contemporary Clinical Trials Communications 36: 101219, Dec 2023.10d Zhang Q, Jiang S, Schroeder A, Hu J, Li K, Zhang B, Dai D, Lee EB, Xiao R, Li M.: CeLEry: a supervised deep learning method for cell location recovery. Nature Communications 14(1): 4050, Jul 2023.
f5 Fan J, Lyu Y, Zhang Q, Wang X, Li M#, Xiao R#.: MUSIC2: cell type deconvolution for multi-condition bulk RNA-seq data. Briefings in Bioinformatics 23(6): bbac430, Nov 2022.
110 Fan J, Wang X, Xiao R#, Li M#.: Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data. PLoS Genetics 17(3): e1009080, Mar 2021.
11f Hu J, Fung FW, Jacobwitz M, Parikh DS, Vala L, Donnelly M, Topjian AA, Abend NS, Xiao R.: Machine learning models to predict electroencephalographic seizures in critically ill children. Seizure 87: 61-68, Mar 2021.
124 Fan J, Hu J, Xue C, Zhang H, Susztak K, Reilly MP, Xiao R#, Li M#.: ASEP: gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. PLoS Genetics 16(5): e1008786, May 2020.
152 Ficicioglu C, Ahrens-Nicklas RC, Barch J, Cuddapah SR, DiBoscio BS, DiPerna JC, Gordon PL, Henderson N, Menello C, Luongo N, Ortiz D, Xiao R.: Newborn screening for Pompe disease: Pennsylvania experience. International Journal of Neonatal Screen 6(4): 89, Nov 2020.
16d Bonafide CP, Xiao R, Brady PW, Landrigan CP, Brent C, Wolk CB, Bettencourt A, Barg F, Beidas RS, Schondelmeyer A; Pediatric Research in Inpatient Settings (PRIS) Network.: Continuous pulse oximetry monitoring use in hospitalized children with bronchiolitis. JAMA 323(15): 1467-1477, Apr 2020.
13c Atkinson MA#, Xiao R#, Köttgen A, Wühl E, Wong CS, Wuttke M, Schaefer F, Warady BA, Furth SL.: Genetic associations of hemoglobin in children with chronic kidney disease in the PediGFR consortium. Pediatric Research 85(3): 324-328, Feb 2019.
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