James C. Gee
Associate Professor of Radiologic Science in Radiology
Director, Penn Image Computing and Science Laboratory
Co-Director, HHMI-NIH Interfaces Program in Biomedical Imaging and Informational Sciences
Co-Director, Translational Biomedical Imaging Center
Department: Radiology
Contact information
3600 Market St. Suite 370
Philadelphia, PA 19104-2644
Philadelphia, PA 19104-2644
Office: 215-662-7109
Fax: 215-615-3681
Fax: 215-615-3681
Email:
gee@mail.med.upenn.edu
gee@mail.med.upenn.edu
Education:
B.S. (Electrical Engineering)
University of Washington, 1987.
B.S. (Computer Science)
University of Washington, 1987.
M.S. (Electrical Engineering)
University of Washington, 1989.
Ph.D. (Computer and Information Science)
University of Pennsylvania, 1996.
Permanent linkB.S. (Electrical Engineering)
University of Washington, 1987.
B.S. (Computer Science)
University of Washington, 1987.
M.S. (Electrical Engineering)
University of Washington, 1989.
Ph.D. (Computer and Information Science)
University of Pennsylvania, 1996.
Description of Itmat Expertise
Dr. Gee's major area of interest is biomedical image analysis and computing, with active research in all of the quantitative methods represented, including segmentation, registration, morphometry and shape statistics, as applied to a variety of organ systems and all of the major and emerging modalities in biological/biomaterials imaging and in vivo medical imaging.Selected Publications
Massimo, L., Powers, C., Moore, P. N., Vesely, L., Avants, B. B., Gee, J. C., Libon, D. J., Grossman, M.: Neuroanatomy of apathy and disinhibition in frontotemporal lobar degeneration. Dementia and Geriatric Cognitive Disorders 27(1): 94-104, 2009.Yushkevich, P. A., Avants, B. B., Pluta, J., Das, S. R., Minkoff, D., Mechanic-Hamilton, D., Glynn, S., Pickup, S., Liu, W., Gee, J. C., Grossman, M., Detre, J. A.: A high-resolution computational atlas of the human hippocampus from postmortem magnetic resonance imaging at 9.4 T. NeuroImage 44(2): 385-398, 2009.
Tustison, N. J., Avants, B. B., Gee, J. C.: Directly manipulated free-form deformation image registration. IEEE Transactions on Image Processing 18(3): 624 - 635, 2009.
Das, S. R., Avants, B. B., Grossman, M., Gee, J. C.: Registration based cortical thickness measurement. NeuroImage 45(3): 867-879, 2009.
Pluta, J., Avants, B. B., Glynn, S., Awate, S. P., Gee, J. C., Detre, J. A.: Appearance and incomplete label matching for diffeomorphic template based hippocampus segmentation. Workshop on Computational Anatomy & Physiology of the Hippocampus, Medical Image Computing and Computer-Assisted Intervention Page: 105-116, 2008.
Song, Z., Awate, S. P., Gee, J. C.: Nonparametric Markov priors for tissue segmentation. IEEE International Symposium on Biomedical Imaging. Piscataway, NJ:IEEE Signal Processing Society, Page: 73-76, 2008.
Siqueira, M., Latecki, L. Jan., Tustison, N. J., Gallier, J., Gee, J. C.: Topological repairing of 3D digital images. Journal of Mathematical Imaging and Vision 30(3): 249-274, 2008.
Simon, T. J., Wu, Z., Avants, B. B., Zhang, H., Gee, J. C., Stebbins, G. T.: Atypical cortical connectivity and visuospatial cognitive impairments are related in children with chromosome 22q11.2 deletion syndrome. Behavioral and Brain Functions 4(25): 1-11, 2008.
Ramirez-Manzanares, A., Zhang, H., Rivera, M., Gee, J. C.: Robust regularization for the estimation of intra-voxel axon fiber orientations. Mathematical Methods in Biomedical Image Analysis. Los Alamitos, CA:IEEE Computer Society, Page: 1-8, 2008.
Ramirez-Manzanares, A., Cook, P. A., Gee, J. C.: A comparison of methods for recovering intra-voxel white matter fiber architecture from clinical diffusion imaging scans. Medical Image Computing and Computer-Assisted Intervention. Heidelberg:Springer-Verlag, LNCS 5241: 305-312, 2008.