Arupa Ganguly, PhD

Professor of Genetics at the Hospital of the University of Pennsylvania
Department: Genetics
Graduate Group Affiliations
Contact information
415 Anatomy Chemistry Building
3620 Hamilton Walk
Philadelphia, PA 19104
3620 Hamilton Walk
Philadelphia, PA 19104
Office: 215-898-3122
Fax: 215-573-5940
Lab: 215-573-3020
Fax: 215-573-5940
Lab: 215-573-3020
Email:
GANGULY@MAIL.MED.UPENN.EDU
GANGULY@MAIL.MED.UPENN.EDU
Publications
Links
Search PubMed for articles
Genetic Diagnostic Laboratory, Department of Genetics, University of Pennsylvania, School of Medicine
Search PubMed for articles
Genetic Diagnostic Laboratory, Department of Genetics, University of Pennsylvania, School of Medicine
Education:
B.S. (Physics)
Calcutta University, 1974.
M.S. (Physics)
Calcutta University, 1977.
Ph.D. (Biophysics)
University of Calcutta, 1984.
FACMG (Clinical Molecular Genetics)
American Board of Medical Genetics, 1999.
FACMG (Clinical Molecular Genetics)
American Board of Medical Genetics, 2009.
Permanent linkB.S. (Physics)
Calcutta University, 1974.
M.S. (Physics)
Calcutta University, 1977.
Ph.D. (Biophysics)
University of Calcutta, 1984.
FACMG (Clinical Molecular Genetics)
American Board of Medical Genetics, 1999.
FACMG (Clinical Molecular Genetics)
American Board of Medical Genetics, 2009.
Description of Research Expertise
Genetic Analysis of Predisposition to Retinoblastoma and Uveal MelanomaRetinoblastoma is a childhood onset ocular cancer caused by mutations in tumor suppressor gene, RB1, present on chromosome 13.
RB1 was the first tumor suppressor gene identified and validated the two hit hypothesis of cancer proposed by Alfred Knudson. The burden of lost eye sight in early childhood is very high with this disease – it has been reduced remarkably in the developed countries, but still is a major concern in developing countries.
Thus there is a need to reduce the burden of blindness by developing treatment modality that will spare the infant eye and vision.
An interesting aspect of RB1 is that this gene is inactivated in half of all known cancer. Yet an individual born with a germline mutation in RB1 gene is predisposed to childhood onset eye tumor and a second cancer that can be osteosarcoma if exposed to radiation or melanoma. This means that the RB1 gene product has a very specific role in the development of the retina – a role that is not shared by other tissues.
However the cell of origin of retinoblastoma is not known. Therefore by studying the gene expression profile of enucleated retinoblastoma tumors we are attempting to answer a few clinical questions like the clinical response to different treatment options, potential for metastasis and molecular basis of other predictive clinical features. In addition we are trying to identify the expression profiles of genes characteristic of the progenitor cells for retina and define at which stage of retinal cell development does the process of tumorigenesis begin.
Another recent direction of research is in defining the molecular basis of uveal melanoma. Uveal melanoma is a rare form of ocular cancer in the Western world and the incidence rate is 1 in 100, 000. A significant observation is that almost half of all identified cases of uveal melanoma develop liver metastasis and die within a very short period after the initial diagnosis. Thus it is a major health care issue. The only prognostic features available at this time are monosomy for chromosome 3 along with alterations on chromosomes 1, 6 and 8 and are associated with bad prognosis. These features suggest an underlying genetic predisposition towards melanomas. Uveal melanoma can be mistaken for congenital nevi and may be undiagnosed or under diagnosed. The goals of this project are: i) To develop a gene signature that will be predictors of metastasis based on investigations on fine needle aspirates. ii) To understand the molecular mechanisms regulating the development of uveal melanomas.
Selected Publications
Sigal W, Boodhansingh KE, Ganguly A, Mitteer LM, Stanley CA, De León DD: Congenital Hyperinsulinism and Long QT Syndrome Attributable to a Variant in KCNE1. Horm Res Pediatr Jan 2025 Notes: Online ahead of print.Boodhansingh KE, Lord K, Adzick NS, Bhatti T, Ganguly A, Stanley CA, De Leon DD.: Low-level mosaic GCK mutations in children with diazoxide-unresponsive congenital hyperinsulinism. J Clin Endocrinol Metab Oct 2024 Notes: Online ahead of print.
Bansal R, Sener H, Ganguly A, Shields JA, Shields CL: Metastasis-free survival of uveal melanoma by tumor size category based on The Cancer Genome Atlas (TCGA) classification in 1001 cases. Clin Exp Ophthalmol. (eds.). Oct 2024 Notes: Online ahead of print.
George AM, Viswanathan A, Best LG, Monahan C, Limmina M, Ganguly A, Kalish JM.: Expanded phenotype and cancer risk in patients with Beckwith-Wiedemann spectrum caused by CDKN1C variants. Am J Med Genet A 194(10): e63777, Oct 2024.
Lalonde E, Li D, Ewens K, Shields CL, Ganguly A.: Genome-Wide Methylation Patterns in Primary Uveal Melanoma: Development of MethylSig-UM, an Epigenomic Prognostic Signature to Improve Patient Stratification. Cancers (Basel) 16(15): 2650, Jul 2024.
Stålhammar G, Coupland SE, Ewens KG, Ganguly A, Heimann H, Shields CL, Damato B.: Improved Staging of Ciliary Body and Choroidal Melanomas Based on Estimation of Tumor Volume and Competing Risk Analyses. Ophthalmology 131(4): 478-491, Apr 2024.
Nriagu BN, Williams LS, Brewer N, Surrey LF, Srinivasan AS, Li D, Britt A, Treat J, Crowley TB, O'Connor N, Ganguly A, Low D, Queenan M, Drivas TG, Zackai EH, Adams DM, Hakonarson H, Snyder KM, Sheppard SE: Microcystic lymphatic malformations in Turner syndrome are due to somatic mosaicism of PIK3CA. Am J Med Genet A 194(1): 64-69, Jan 2024.
Jung EM, Bunin GR, Ganguly A, Johnson RA, Spector LG.: The association between maternal nutrient intake during pregnancy and the risk of sporadic unilateral retinoblastoma among offspring. Cancer Epidemiol 85(1): 102376, Aug 2023.
Sheppard SE, March ME, Seiler C, Matsuoka LS, Kim SE, Kao C, Rubin AI, Battig MR, Khalek N, Schindewolf E, O'Connor N, Pinto E, Priestley JR, Sanders VR, Niazi R, Ganguly A, Hou C, Slater D, Frieden IJ, Huynh T, Shieh JT, Krantz ID, Guerrero JC, Surrey LF, Biko DM, Laje P, Castelo-Soccio L, Nakano TA, Snyder K, Smith CL, Li D, Dori Y, Hakonarson H.: Lymphatic disorders caused by mosaic, activating KRAS variants respond to MEK inhibition. JCI Insight 8: e155888, May 2023.
Best LG, Duffy KA, George AM, Ganguly A, Kalish JM.: Familial Beckwith-Wiedemann syndrome in a multigenerational family: Forty years of careful phenotyping. Am J Med Genet A 191(2): 348-356, Feb 2023.