Perelman School of Medicine at the University of Pennsylvania

Section for Biomedical Image Analysis (SBIA)

participating with CBICA

MICCAI 2018 Tutorial on

Tools Allowing Clinical Translation of Image Computing ALgorithms

Thursday 20 September 2018  —  Granada Conference Center, Spain

[  T. A. C. T. I. C. AL.  ]

  Scope Objectives Speakers/Schedule Material Organization  

Schedule

09:30 - 11:00: Early Morning Session
  09:30 - 09:40 Welcome — Introduction to TACTICAL
Spyridon Bakas (CBICA, University of Pennsylvania
  09:40 - 10:10 Overview of the NIH/NCI Informatics Technology for Cancer Research (ITCR) programme & the development of NIH/NCI Imaging Data Commons (IDC)
Stephen D Jett (National Institutes of Health / National Cancer Institute)
[Slides] [ITCR Homepage] [Data Commons Homepage]
  10:10 - 10:35 Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery
Presenter: Ken Chang
PI: Jayashree Kalpathy-Cramer (Harvard Medical School)
[Slides] [Source Code (C-BIBOP)]
  10:35 - 11:00 Tools to Analyze Morphology and Spatially Mapped Molecular Data
Presenter: Tahsin Kurc
PI: Joel Saltz (Stony Brook University)
[Slides] [Source Code (QuIP)] [Homepage]
  11:00 - 11:30 COFFEE BREAK
11:30 - 13:30: Morning Session
  11:30 - 11:55 Clinical workflows with the XNAT imaging informatics platform
PI/Presenter: Dan Marcus (Washington University in St. Louis)
[Slides] [Source Code & Additional Material]
  11:55 - 12:20 Cancer Imaging Phenomics Toolkit (CaPTk)
PI/Presenter: Christos Davatzikos (University of Pennsylvania)
[Slides] [Source Code (CaPTk)] [Windows Executable] [Linux Binary] [Homepage]
  12:20 - 12:45 Pathology Image Informatics Platform for Visualization, Analysis and Management
Presenter: Nate Braman
PIs: Anant Madabhushi, Anne Martel, Metin Gurcan (Case Western Reserve Uni., Uni.Toronto, Wake Forest)
[Slides] [Free Software Viewer] [Source Code (PathIIP Plugins)] [Homepage]
  12:45 - 13:10 NiftyNet: An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
PI/Presenter: Tom Vercauteren (King’s College London)
[Slides] [Source Code  (NiftyNet)] [Homepage]
  13:10 - 13:35 Deep Learning Toolkit (DLTK) for Medical Image Analysis
PI/Presenter: Martin Rajchl (Imperial College London)
[Slides] [Source Code (DLTK)] [Homepage]
  13:30 - 15:00 LUNCH BREAK

Feel free to send any communication related to the TACTICAL Tutorial in tactical@cbica.upenn.edu