Affymetrix Users

Affymetrix Data:

• Take a look at methods used in target preparation/hybridization and initial data analysis.
• Find out how to retrieve data for your Affymetrix transcript profiling experiment.
  

Manuals:
Download manuals for Affymetrix products, including:

• NetAffx Analysis Center User's Guide (pdf, 1 MB)
• Expression Analysis Technical Manual (pdf, 5.38 MB) includes detailed protocols for expression analysis including sample preparation, target labeling, hybridization, washing scanning and basic data analysis.
• Microarray Suite User's Guide, Version 5.0 (pdf, 361 KB) includes details on how to use MAS to control the GeneChip Fluidics Station and Scanner, analyze experimental data and generate reports that summarize intensity data, analysis output and algorithm settings.
• And many others.

NetAffx:
The NetAffx™ Analysis Center enables researchers to correlate their GeneChip® array results with array design and annotation information. This online resource provides the scientific community with access to array content information, including probe sequences and gene annotations.

Microarray Suite Version 5.0:

• Review the technical note of the MAS 5.0 algorithms
• Review Statistical Algorithms Reference Guide

Additional Resources:

• Scientific Publications allows researchers to search the publications using Affymetrix technology. The full list is also available.
• Grant Writing Resources provides descriptions about GeneChip technology and products to streamline your grant-writing process.
• Technical Notes regarding GeneChip Arrays and software.

Last Updated on 9/3/03