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  • HCImage (Baumgart)
    Hamamatsu’s core image processing and image analysis software is designed for fluorescence microscopy, ratio imaging, TIRF, FRET, FRAP, multi-dimensional time lapse imaging, protein-protein interaction analysis or particle size analysis.
  • Image J 1.42 (Baumgart, Orange)
    ImageJ is the world’s fastest pure Java image processing program.
  • Fluoview 5.0 (Baumgart)
    Olympus’ image acquisition and analysis software.
  • Mathworks MATLAB R2007b (Baumgart)
    MATLAB® is a high-level technical computing language and interactive environment for algorithm development, data visualization, data analysis, and numeric computation.
  • Metafluor (Freedman)
    The MetaFluor® Imaging System is designed for dual-wavelength intracellular ion measurements.
  • Metamorph (Freedman)
    Combining flexible and powerful tools for image acquisition, processing, and analysis, MetaMorph imaging systems offer a complete solution for live-cell imaging.
  • Slidebook 5.0 (Burkhardt, Argon, Orange)
    3i's core operating system for turnkey microscopy workstations. Comes complete with tools for 2D, 3D, 4D, 6D, timelapse, and multichannel imaging. Available software includes the Ratio/FRET module.
  • Volocity 5.1 (Burkhardt, Orange, Penn Vet Imaging Core)
    High performance software for 3D and 4D image visualization, quantitative analysis and deconvolution (Mac and Windows). IMIG members have access to a multi-copy Volocity licence server, which can be accessed from any networked computer.  Individuals from member labs who need access to this server should contact Lingli Zhang ( to obtain an account.