Software & OS
Cluster Operating System is Red Hat Enterprise Linux v. 6.4, and this version is installed on all compute nodes. Alternate OS installations are available on an as-needed basis, by request only.
Cluster software is either loaded on the individual node hard drives by HPC staff, providing the best performance, or is run from a client’s share on the SONAS file system, generally not requiring any HPC staff involvement. Clients needing software installation should place a service request in the PMACS HPC queue, or e-mail to psom-pmacshpc@pennmedicine.upenn.edu. An up to date software installation list can be obtained on our Wiki page, here. Below is a partial list of software packages that have been installed on the cluster centrally. Please click on the links below for more information on the software installation, location, and use.
NAMD-2.9-Linux-x86_64-multicore |
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Picard-1.96 |
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R |
Ruby-1.8.7-p374 |
Ruby-1.9.3-p448 |
RUM-2.0.5_05 |
Samtools-0.1.19 |
STAR-2.3.0e |
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