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Perelman School of Medicine at the University of Pennsylvania Perelman School of Medicine at the University of Pennsylvania
Penn-CHOP Lung Biology Institute
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Resources

Database Resources

  • LungMAP
  • Lung Gene Expression Analysis Web Portal
  • UCSC Genome Browser
  • Ensembl
  • GTEx Portal
  • HCA: Human Cell Atlas
  • Gene Cards
  • HUGO Gene Nomenclature Committee
  • The Cancer Genome Atlas Program
  • KEGG: Kyoto Encyclopedia of Genes and Genomes
  • WikiPathways
  • MGI: Mouse Genome Informatics
  • JASPAR a database of transcription factor binding profiles
  • STRING: Protein-Protein Interaction Networks
  • NHGRI-EBI Catalog of published genome-wide association studies

Analysis Tools

  • ToppGene
  • Panther Classification System
  • Galaxy
  • oPOSSUM
  • MEME Motif-sequence analysis tools
  • GSEA: Gene Set Enrichment
  • GeneMANIA
  • ShinyGO Gene Ontology Enrichment

Bioinformatics Blogs/Forums

  • Reddit - Bioinformatics
  • RNA-Seq Blog | Transcriptome Research & Industry News
  • Biostars
  • SEQanswers
  • CrossValidated Statisical Forum
  • Awosome-bioinformatics

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