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Research interest: Work in my laboratory is aimed toward the understanding of molecular pathways that govern chronic kidney disease development.
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Research details
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Chronic kidney disease is an enormous burden on society. Our team aims to understand the genetics and molecular mechanism of kidney disease development, with the ultimate goal of finding new, more effective therapies.
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We made discoveries fundamental towards defining critical genes, cell types and mechanisms of chronic kidney disease. Our studies were instrumental in defining genetic, epigenetic and transcriptional changes in diseased human kidneys. We identified multiple novel kidney disease genes and demonstrated role of Notch signaling and metabolic dysregulation in kidney disease development.
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Our lab was the first to map the kidney epigenome and catalogue genotype-driven gene-expression variation (eQTL) in human kidneys. Integration of genome-wide association studies
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(GWAS), eQTL and epigenome data has been essential to prioritize disease-causing genes and variants.
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Our team generated the first unbiased, comprehensive kidney cell-type atlas using single cell transcriptomics. We identified that specific renal endophenotypes are linked and likely caused by the dysfunction of specific cell types.
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In follow-up animal model studies, we conclusively demonstrated that MANBA, DAB2, CASP9, DPEP1/CHMP1A, DACH1 and APOL1 are new kidney disease risk genes. Her work established the role of proximal tubule cells, endolysosomal trafficking, metabolic and developmental pathways in kidney disease development.
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Our discoveries span genetics, genomics, epigenetics, molecular biology, physiology and nephrology, and have enormous translational relevance and considerable therapeutic potential.
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Rotation Projects
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There are several; please speak with Dr. Susztak.
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Lab Personnel:
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Hongbo Liu-postoctoral fellow
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Poona Dhillon-postoctoral fellow
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Ghazal Quinn-Instructor of Medicine
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Hailong Hu-postoctoral fellow
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Amin Abedini-postoctoral fellow
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Dhanunjay Mukhi-postoctoral fellow
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Jianfu Zhou-postoctoral fellow
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Xiujie Liang-postoctoral fellow
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Bibek Poudel-postoctoral fellow
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Daigoro Hiroshima-postoctoral fellow
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Shen Li-Visiting scientist
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Andrea Sanchez-postoctoral fellow
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Samer Mohandes-postoctoral fellow
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Yu Yan-Student
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Lakshmi Kolligunda-postoctoral fellow
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Jonathan Levinsohn
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Li Zeng-Visiting scientist
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Konstantin Kloetzer -Student
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Lauren Lee-graduate student
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Mehrbod Vakhshoori-postoctoral fellow
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Andi Bergeson- Research specialist
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Selected Publications:
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1. Niranjan T, Bielesz B, Gruenwald A, Ponda MP, Kopp JB, Thomas DB, Susztak K (2008)The Notch pathway in podocytes plays a role in the development of glomerular disease. Nat Med 14:290-8.
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2. Kang HM, Ahn SH, Choi P, Ko YA, Han SH, Chinga F, Park AS, Tao J, Sharma K, Pullman J, Bottinger EP, Goldberg IJ, Susztak K (2015) Defective fatty acid oxidation in renal tubular epithelial cells has a key role in kidney fibrosis development. Nat Med 21:37-46.
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3. Beckerman P, Bi-Karchin J, Park AS, … Susztak K (2017) Transgenic expression of human APOL1 risk variants in podocytes induces kidney disease in mice. Nat Med 23:429-38.
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4. Park J, Shrestha R, Qiu C, Kondo A, Huang S, Werth M, Li M, Barasch J, Susztak K (2018) Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease. Science 360:758-63.
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5. Qiu C, Huang S, Park J, Park Y, Ko YA, Seasock MJ, Bryer JS, Xu XX, Song WC, Palmer M, Hill J, Guarnieri P, Hawkins J, Boustany-Kari CM, Pullen SS, Brown CD, Susztak K (2018) Renal compartment-specific genetic variation analyses identify new pathways in chronic kidney disease. Nat Med 24:1721-31.
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6. Wu J, Ma Z, Raman A, … Susztak K (2021) APOL1 risk variants in individuals of African genetic ancestry drive endothelial cell defects that exacerbate sepsis. Immunity 54:2632-49 e6.
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7. Wu J, Raman A, Coffey NJ, … Susztak K (2021) The key role of NLRP3 and STING in APOL1-associated podocytopathy. J Clin Invest 131(20):e136329.
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8. Gu X, Yang H, Sheng X, … Susztak K (2021) Kidney disease genetic risk variants alter lysosomal beta-mannosidase (MANBA) expression and disease severity. Sci Transl Med 13(576):eaaz1458..
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9. Doke T, Huang S, Qiu C, Liu H, Guan Y, Hu H, Ma Z, Wu J, Miao Z, Sheng X, Zhou J, Cao A, Li J, Kaufman L, Hung A, Brown CD, Pestell R, Susztak K (2021) Transcriptome-wide association analysis identifies DACH1 as a kidney disease risk gene that contributes to fibrosis. J Clin Invest 131(10):e141801.
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10. Sheng X, Guan Y, Ma Z, Wu J, Liu H, Qiu C, Vitale S, Miao Z, Seasock MJ, Palmer M, Shin MK, Duffin KL, Pullen SS, Edwards TL, Hellwege JN, Hung AM, Li M, Voight BF, Coffman TM, Brown CD, Susztak K (2021) Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments. Nat Genet 53:1322-33.
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Selected Publications
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Yuan M, Jin K, Yan H, Schroeder A, Luo C, Yao S, Dumoulin B, Levinsohn J, Luo T, Clemenceau J, Jang I, Kim M, Liu Y, Deng M, Furth EE, Wilson P, Nayak A, Lubo I, Soto LMS, Wang L, Park JH, Susztak K, Hwang TH, Li M.: Designing smart spatial omics experiments with S2Omics. bioRxiv Sep 2025.
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Martinez Leon V, Hilburg R, Susztak K.: Mechanisms of diabetic kidney disease and established and emerging treatments. Nat Rev Endocrinol Sep 2025.
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Anandh U, Anders HJ, Bacchetta J, Johnson DW, Luyckx V, Remuzzi G, Rodriguez-Iturbe B, Susztak K, Tuttle K, Yanagita M.: Two decades of nephrology research: progress and future challenges. Nat Rev Nephrol Sep 2025.
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Li C, Marschner JA, Kusunoki Y, Zhang N, Li X, Deng H, Zhao Z, Watanabe-Kusunoki K, Zhu Z, Xu Y, Steiger S, Lech M, Susztak K, Schulz C, Anders HJ.: Macrophage Zc3h12c Limits Tissue Inflammation and Injury via Alternative Splicing of Pre-mRNA. Adv Sci (Weinh) Aug 2025.
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Md Dom ZI, Moon S, Satake E, Hirohama D, Palmer ND, Lampert H, Ficociello LH, Abedini A, Fernandez K, Liang X, Pickett S, Levinsohn J, O'Neil K, Dillon ST, Mauer M, Galecki AT, Freedman BI, Susztak K, Doria A, Krolewski AS, Niewczas MA.: Urinary Complement proteome strongly linked to diabetic kidney disease progression. Nat Commun 16: 7291, Aug 2025.
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Hirohama D, Fadista J, Ha E, Liu H, Abedini A, Levinsohn J, Vassalotti A, Zeng L, Li C, Mohandes S, Vitale S, Shungin D, Nguyen T, Niewczas MA, Olsson N, McAllister FE, Karihaloo A, Susztak K.: The proteogenomic landscape of the human kidney and implications for cardio-kidney-metabolic health. Nat Med Aug 2025.
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Ojo AO, Adu D, Bramham K, Freedman BI, Gbadegesin RA, Ilori TO, Jefferson N, Olabisi OA, Susztak K, Young BA, Cheung M, King JM, Grams ME, Jadoul M, Ulasi II; Conference Participants.: APOL1 kidney disease: conclusions from a Kidney Disease: Improving Global Outcomes (KDIGO) Controversies Conference. Kidney Int Jun 2025.
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Cole JB, Dahlström EH, Fermin D, Gupta Y, Hill C, Smyth LJ, Liu H, Kreienkamp RJ, Pezzolesi MG, Cao JJ, Valo E, Chen WM, Onengut-Gumuscu S, Rich SS, Brennan EP, Andrews D, Kennedy C, Gu HF, Stechemesser L, Weitgasser R, Sokolovska J, Radzeviciene L, Verkauskiene R, Panduru NM, Rossing P, Ahluwalia TS, Zerbini G, Marre M, Hadjadj S, Costacou T, Miller RG, Klein BE, Lee KE, Snell-Bergeon JK, Caramori ML, Mauer M, Brismar K, Bjornstad P, McKnight AJ, McKay G, Nair V, Salem RM, Groop PH, Godson C, Susztak K, Kretzler M, Maxwell AP, Krolewski A, Paterson A, Sandholm-Lafferre N, Florez JC, Hirschhorn JN.: Genome-Wide Association Study of Quantitative Kidney Function in 52,531 Individuals with Diabetes Identifies Five Diabetes-Specific Loci. J Am Soc Nephrol May 2025.
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Kolligundla LP, Sullivan KM, Mukhi D, Andrade-Silva M, Liu H, Guan Y, Gu X, Wu J, Doke T, Hirohama D, Guarnieri P, Hill J, Pullen SS, Kuo J, Inamoto M, Susztak K.: Glutathione-specific gamma-glutamylcyclotransferase 1 (CHAC1) increases kidney disease risk by modulating ferroptosis. Sci Transl Med 17: eadn3079, Apr 2025.
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Mukhi D, Kolligundla LP, Doke T, Silva MA, Liu H, Palmer M, Susztak K.: The actin and microtubule network regulator WHAMM is identified as a key kidney disease risk gene. Cell Rep 44: 115462, Apr 2025.
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Last updated: 09/26/2025
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The Trustees of the University of Pennsylvania
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