Journal Publications

Cheng H, Gao L, Jing R, Hou B, Guo X, Yao Y, Feng M, Xing B, Feng F, Fan Y. Reversibility of Impaired Large-Scale Functional Brain Networks in Cushing's Disease after Surgery Treatment: A Longitudinal Study. Neuroendocrinology. 2023 Nov 1. doi: 10.1159/000534789. Epub ahead of print. PMID: 37913760
Li Y, Joaquim MR, Pickup S, Song HK, Zhou R, Fan Y. Learning ADC maps from accelerated radial k-space diffusion-weighted MRI in mice using a deep CNN-transformer model. Magn Reson Med. 2023 Aug 20. doi: 10.1002/mrm.29833. Epub ahead of print. PMID: 37598398
Jing R, Lin X, Ding Z, Chang S, Shi L, Liu L, Wang Q, Si J, Yu M, Zhuo C, Shi J, Li P, Fan Y, Lu L. Heterogeneous brain dynamic functional connectivity patterns in first-episode drug-naive patients with major depressive disorder. Hum Brain Mapp. 2023 Jun 1;44(8):3112-3122. doi: 10.1002/hbm.26266. Epub 2023 Mar 15. PMID: 36919400; PMCID: PMC10171501
Lee SH, Geng H, Arnold J, Caruana R, Fan Y, Rosen MA, Apte AP, Deasy JO, Bradley JD, Xiao Y. Interpretable Machine Learning for Choosing Radiation Dose-volume Constraints on Cardio-pulmonary Substructures Associated with Overall Survival in NRG Oncology RTOG 0617. Int J Radiat Oncol Biol Phys. 2023 Jun 19: S0360-3016(23)00591-6. doi: 10.1016/j.ijrobp.2023.06.009. Epub ahead of print. PMID: 37343707
Li H, Srinivasan D, Zhuo C, Cui Z, Gur RE, Gur RC, Oathes DJ, Davatzikos C, Satterthwaite TD, Fan Y. Computing personalized brain functional networks from fMRI using self-supervised deep learning. Med Image Anal. 2023 Jan 21;85:102756. doi: 10.1016/j.media.2023.102756. Epub ahead of print. PMID: 36706636.
Weaver JK, Martin-Olenski M, Logan J, Broms R, Antony M, Van Batavia J, Weiss DA, Long CJ, Smith AL, Zderic SA, Huang J, Fan Y, Tasian GE. Deep Learning of Videourodynamics to Classify Bladder Dysfunction Severity in Patients with Spina Bifida. J Urol. 2023 Feb 14:101097JU0000000000003267. doi: 10.1097/JU.0000000000003267. Epub ahead of print. PMID: 36787376.
Zhou Z, Li H, Srinivasan D, Abdulkadir A, Nasrallah I, Wen J, Doshi J, Erus G, Mamourian E, Bryan NR, Wolk DA, Beason-Held L, Resnick SM, Satterthwaite TD, Davatzikos C, Shou H, Fan Y; ISTAGING Consortium. Multiscale functional connectivity patterns of the aging brain learned from harmonized rsfMRI data of the multi-cohort iSTAGING study. Neuroimage. 2023 Jan 30:119911. doi: 10.1016/j.neuroimage.2023.119911. Epub ahead of print. PMID: 36731813.
Cynthia H. Y. Fu, Guray Erus, Yong Fan, Mathilde Antoniades, Danilo Arnone, Stephen R. Arnott, Taolin Chen, Ki Sueng Choi, Cherise Chin Fatt, Benicio N. Frey, Vibe G. Frokjaer, Melanie Ganz, Jose Garcia, Beata R. Godlewska, Stefanie Hassel, Keith Ho, Andrew M. McIntosh, Kun Qin, Susan Rotzinger, Matthew D. Sacchet, Jonathan Savitz, Haochang Shou, Ashish Singh, Aleks Stolicyn, Irina Strigo, Stephen C. Strother, Duygu Tosun, Teresa A. Victor, Dongtao Wei, Toby Wise, Rachel D. Woodham, Roland Zahn, Ian M. Anderson, J. F. William Deakin, Boadie W. Dunlop, Rebecca Elliott, Qiyong Gong, Ian H. Gotlib, Catherine J. Harmer, Sidney H. Kennedy, Gitte M. Knudsen, Helen S. Mayberg, Martin P. Paulus, Jiang Qiu, Madhukar H. Trivedi, Heather C. Whalley, Chao-Gan Yan, Allan H. Young, Christos Davatzikos, AI-based dimensional neuroimaging system for characterizing heterogeneity in brain structure and function in major depressive disorder: COORDINATE-MDD consortium design and rationale. BMC Psychiatry 23, 59 (2023). https://doi.org/10.1186/s12888-022-04509-7
J.K. Weaver, J. Logan, R. Broms, M. Antony, M. Rickard, L. Erdman, R. Edwins, R. Pominville, J. Hannick, L. Woo, B. Viteri, N. D’Souza, S. Viswanath, C. Flask, A. Lorenzo, Y. Fan, G.E. Tasian, Deep Learning of Renal Scans in Children with Antenatal Hydronephrosis, Journal of Pediatric Urology, 2023, https://doi.org/10.1016/j.jpurol.2022.12.017
Adam Pines, Arielle S. Keller, Bart Larsen, Maxwell Bertolero, Arian Ashourvan, Dani S. Bassett, Matthew Cieslak, Sydney Covitz, Yong Fan, Eric Feczko, Audrey Houghton, Amanda R. Rueter, Manish Saggar, Golia Shafiei, Tinashe M. Tapera, Jacob Vogel, Sarah M. Weinstein, Russell T. Shinohara, Leanne M. Williams, Damien A. Fair, Theodore D. Satterthwaite, Development of top-down cortical propagations in youth, Neuron,
2023, https://doi.org/10.1016/j.neuron.2023.01.014
Li H, De Deng Z, Oathes D, Fan Y. Computation of transcranial magnetic stimulation electric fields using self-supervised deep learning. Neuroimage. 2022 Oct 21:119705. doi: 10.1016/j.neuroimage.2022.119705. Epub ahead of print. PMID: 36280099.
Shanmugan S, Seidlitz J, Cui Z, Adebimpe A, Bassett DS, Bertolero MA, Davatzikos C, Fair DA, Gur RE, Gur RC, Larsen B, Li H, Pines A, Raznahan A, Roalf DR, Shinohara RT, Vogel J, Wolf DH, Fan Y, Alexander-Bloch A, Satterthwaite TD. Sex differences in the functional topography of association networks in youth. Proc Natl Acad Sci U S A. 2022 Aug 16;119(33):e2110416119. doi: 10.1073/pnas.2110416119. Epub 2022 Aug 8. PMID: 35939696.
Romanello Joaquim, Miguel, Emma E. Furth, Yong Fan, Hee Kwon Song, Stephen Pickup, Jianbo Cao, Hoon Choi, Mamta Gupta, Quy Cao, Russell Shinohara, Deirdre McMenamin, Cynthia Clendenin, Thomas B. Karasic, Jeffrey Duda, James C. Gee, Peter J. O’Dwyer, Mark A. Rosen, and Rong Zhou. 2022. "DWI Metrics Differentiating Benign Intraductal Papillary Mucinous Neoplasms from Invasive Pancreatic Cancer: A Study in GEM Models" Cancers 14, no. 16: 4017. https://doi.org/10.3390/cancers14164017
Babajide R, Lembrikova K, Ziemba J, Ding J, Li Y, Fermin AS, Fan Y, Tasian GE. Automated Machine Learning Segmentation and Measurement of Urinary Stones on CT Scan. Urology. 2022 Jul 28:S0090-4295(22)00626-4. Epub ahead of print. PMID: 35908740. doi: https://doi.org/10.1016/j.urology.2022.07.029
John K Weaver, Karen Milford, Mandy Rickard, Joey Logan, Lauren Erdman, Bernarda Viteri, Neeta D'Souza, Andy Cucchiara, Marta Skreta, Daniel Keefe, Salima Shah, Antoine Selman, Katherine Fischer, Dana A Weiss, Christopher J Long, Armando Lorenzo, Yong Fan, Greg E Tasian: Deep learning imaging features derived from kidney ultrasounds predict chronic kidney disease progression in children with posterior urethral valves. Pediatr Nephrol. 2022 Jul 22. Epub ahead of print. PMID: 35867160. Doi: https://doi.org/10.1007/s00467-022-05677-0
Zaixu Cui, Adam R. Pines, Bart Larsen, Valerie J. Sydnor, Hongming Li, Azeez Adebimpe, Aaron F. Alexander-Bloch, Dani S. Bassett, Max Bertolero, Monica E. Calkins, Christos Davatzikos, Damien A. Fair, Ruben C. Gur, Raquel E. Gur, Tyler M. Moore, Sheila Shanmugan, Russell T. Shinohara, Jacob W. Vogel, Cedric H. Xia, Yong Fan, Theodore D. Satterthwaite: Linking Individual Differences in Personalized Functional Network Topography to Psychopathology in Youth, Biological Psychiatry, 2022
Adam R Pines, Bart Larsen, Zaixu Cui, Valerie J Sydnor, Maxwell A Bertolero, Azeez Adebimpe, Aaron F Alexander-Bloch, Christos Davatzikos, Damien A Fair, Ruben C Gur, Raquel E Gur, Hongming Li, Michael P Milham, Tyler M Moore, Kristin Murtha, Linden Parkes, Sharon L Thompson-Schill, Sheila Shanmugan, Russell T Shinohara, Sarah M Weinstein, Danielle S Bassett, Yong Fan, Theodore D Satterthwaite: Dissociable multi-scale patterns of development in personalized brain networks. Nat Commun. 2022 May 12;13(1):2647. PMID: 35551181; PMCID: PMC9098559
Andrew A Chen, Dhivya Srinivasan, Raymond Pomponio, Yong Fan, Ilya M Nasrallah, Susan M Resnick, Lori L Beason-Held, Christos Davatzikos, Theodore D Satterthwaite, Dani S Bassett, Russell T Shinohara, Haochang Shou: Harmonizing functional connectivity reduces scanner effects in community detection. Neuroimage. 2022 Aug 1;256:119198. Epub 2022 Apr 11. PMID: 35421567; PMCID: PMC9202339
Ganesh B Chand, Pankhuri Singhal, Dominic B Dwyer, Junhao Wen, Guray Erus, Jimit Doshi, Dhivya Srinivasan, Elizabeth Mamourian, Erdem Varol, Aristeidis Sotiras, Gyujoon Hwang, Paola Dazzan, Rene S Kahn, Hugo G Schnack, Marcus V Zanetti, Eva Meisenzahl, Geraldo F Busatto, Benedicto Crespo-Facorro, Christos Pantelis, Stephen J Wood, Chuanjun Zhuo, Russell T Shinohara, Haochang Shou, Yong Fan, Nikolaos Koutsouleris, Antonia N Kaczkurkin, Tyler M Moore, Anurag Verma, Monica E Calkins, Raquel E Gur, Ruben C Gur, Marylyn D Ritchie, Theodore D Satterthwaite, Daniel H Wolf, Christos Davatzikos: Schizophrenia Imaging Signatures and Their Associations With Cognition, Psychopathology, and Genetics in the General Population. Am J Psychiatry. 2022 Apr 12:appiajp21070686. Epub ahead of print. PMID: 35410495
Zaixu Cui, Hongming Li, Cedric H Xia, Bart Larsen, Azeez Adebimpe, Graham L Baum, Matt Cieslak, Raquel E Gur, Ruben C Gur, Tyler M Moore, Desmond J Oathes, Aaron F Alexander-Bloch, Armin Raznahan, David R Roalf, Russell T Shinohara, Daniel H Wolf, Christos Davatzikos, Danielle S Bassett, Damien A Fair, Yong Fan, Theodore D Satterthwaite: Individual Variation in Functional Topography of Association Networks in Youth. Neuron, 106(2):340-353.e8, April 2020
Zhicheng Jiao, Hongming Li, Ying Xiao, Jay Dorsey, Charles B. Simone, II, Steven Feigenberg, Gary Kao, Yong Fan: Integration of deep learning radiomics and counts of circulating tumor cells improves prediction of outcomes of early stage NSCLC patients treated with SBRT, Int J Radiat Oncol Biol Phys. Volume 112, Issue 4, pages: 1045-1054, March 5, 2022. PMID: 34775000
Hongming Li, Yong Fan: MDReg-Net: Multi-resolution diffeomorphic image registration using fully convolutional networks with deep self-supervision, Human Brain Mapping, 2022 Jan 24. Epub ahead of print. PMID: 35072327
Junhao Wen, Erdem Varol, Aristeidis Sotiras, Zhijian Yang, Ganesh B Chand, Guray Erus, Haochang Shou, Ahmed Abdulkadir, Gyujoon Hwang, Dominic B Dwyer, Alessandro Pigoni, Paola Dazzan, Rene S Kahn, Hugo G Schnack, Marcus V Zanetti, Eva Meisenzahl, Geraldo F Busatto, Benedicto Crespo-Facorro, Romero-Garcia Rafael, Christos Pantelis, Stephen J Wood, Chuanjun Zhuo, Russell T Shinohara, Yong Fan, Ruben C Gur, Raquel E Gur, Theodore D Satterthwaite, Nikolaos Koutsouleris, Daniel H Wolf, Christos Davatzikos: Multi-scale semi-supervised clustering of brain images: Deriving disease subtypes. Med Image Anal. 2022 Jan;75:102304. Epub 2021 Nov 11. PMID: 34818611; PMCID: PMC8678373
Robin Wang, Zhicheng Jiao, Li Yang, Ji Whae Choi, Zeng Xiong, Kasey Halsey, Thi My Linh Tran, Ian Pan, Scott A. Collins, Xue Feng, Jing Wu, Ken Chang, Lin-Bo Shi, Shuai Yang, Qi-Zhi Yu, Jie Liu, Fei-Xian Fu, Xiao-Long Jiang, Dong-Cui Wang, Li-Ping Zhu, Xiao-Ping Yi, Terrance T. Healey, Qiu-Hua Zeng, Tao Liu, Ping-Feng Hu, Raymond Y. Huang, Yi-Hui Li, Ronnie A. Sebro, Paul J. L. Zhang, Jianxin Wang, Michael K. Atalay, Wei-Hua Liao, Yong Fan, Harrison X. Bai: Artificial intelligence for prediction of COVID-19 progression using CT imaging and clinical data, European Radiology, 32(1):205-212, Jan 2022
Xiaofeng Zhu, Hongming Li, Heng Tao Shen, Zheng Zhang, Yanli Ji, Yong Fan: Fusing functional connectivity with network nodal information for sparse network pattern learning of functional brain networks, Information Fusion, Volume 75, 2021, Pages 131-139
Vishnu M Bashyam, Jimit Doshi, Guray Erus, Dhivya Srinivasan, Ahmed Abdulkadir, Ashish Singh, Mohamad Habes, Yong Fan, Colin L Masters, Paul Maruff, Chuanjun Zhuo, Henry Völzke, Sterling C Johnson, Jurgen Fripp, Nikolaos Koutsouleris, Theodore D Satterthwaite, Daniel H Wolf, Raquel E Gur, Ruben C Gur, John C Morris, Marilyn S Albert, Hans J Grabe, Susan M Resnick, Nick R Bryan, Katharina Wittfeld, Robin Bülow, David A Wolk, Haochang Shou, Ilya M Nasrallah, Christos Davatzikos, iSTAGING and PHENOM consortia: Deep Generative Medical Image Harmonization for Improving Cross-Site Generalization in Deep Learning Predictors. J Magn Reson Imaging. 2021 Sep 25. Epub ahead of print. PMID: 34564904
Tianming Du, Honggang Zhang, Yuemeng Li, Stephen Pickup, Mark Rosen, Rong Zhou, Hee Kwon Song, Yong Fan: Adaptive convolutional neural networks for accelerating magnetic resonance imaging via k-space data interpolation, Medical Image Analysis, April 28, 2021
Zhicheng Jiao, Ji Whae Choi, Kasey Halsey, Thi My Linh Tran, Ben Hsieh, Dongcui Wang, Feyisope Eweje, Robin Wang, Ken Chang, Jing Wu, Scott A Collins, Thomas Y Yi, Andrew T Delworth, Tao Liu, Terrance T Healey, Shaolei Lu, Jianxin Wang, Xue Feng, Michael K Atalay, Li Yang, Michael Feldman, Paul J L Zhang, Wei-Hua Liao, Yong Fan, Harrison X Bai: Prognostication of patients with COVID-19 using artificial intelligence based on chest x-rays and clinical data: a retrospective study, The Lancet Digital Health, 3(5):E286-E294, May 01, 2021
Sang Ho Lee, Gary D. Kao, Steven J. Feigenberg, Jay F. Dorsey, Melissa A. Frick, Samuel Jean-Baptiste, Chibueze Z. Uche, Keith A. Cengel, William P. Levin, Abigail T. Berman, Charu Aggarwal, Yong Fan, Ying Xiao: Multi-block Discriminant Analysis of Integrative ¹⁸F-FDG-PET/CT Radiomics for Predicting Circulating Tumor Cells in Early Stage Non-small Cell Lung Cancer Treated with Stereotactic Body Radiation Therapy, International Journal of Radiation Oncology, Biology, Physics, 2021 Mar 1; S0360-3016(21)00208-X
Jie Li, Yong Fan, Bo Hou, Xinying Huang, Dan Lei, Jie Wang, Chenhui Mao, Liling Dong, Caiyan Liu, Feng Feng, Qi Xu, Liying Cui, Jing Gao: A longitudinal observation of brain structure between AD and FTLD. Clin Neurol Neurosurg. 2021 Mar 24; 205:106604. Epub ahead of print. PMID: 33887505
Subhanik Purkayastha, Yanhe Xiao, Zhicheng Jiao, Rujapa Thepumnoeysuk, Kasey Halsey, Jing Wu, Thi My Linh Tran, Ben Hsieh, Ji Whae Choi, Dongcui Wang, Martin Vallières, Robin Wang, Scott Collins, Xue Feng, Michael Feldman, Paul J. Zhang, Michael Atalay, Ronnie Sebro, Li Yang, Yong Fan, Wei-hua Liao, Harrison X. Bai: Machine learning to predict COVID-19 severity and progression to critical illness using CT imaging and clinical data, the Korean Journal of Radiology, 22:e32. Mar 09, 2021
Yuemeng Li, Hongming Li, and Yong Fan: ACEnet: Anatomical Context-Encoding Network for Neuroanatomy Segmentation, Medical Image Analysis, 70(101991):1-12, May 2021
Desmond Oathes, Nicholas Balderston, Konrad Kording, Joseph Deluisi, Gianna Perez, John Medaglia, Yong Fan, Romain Duprat, Theodore Satterthwaite, Yvette Sheline, Kristin Linn: Combining transcranial magnetic stimulation with functional magnetic resonance imaging for probing and modulating neural circuits relevant to affective disorders, Wiley Interdisciplinary Reviews: Cognitive Science, Jan 19, 2021
Xiao Lin, Weikai Li, Guangheng Dong, Qiandong Wang, Hongqiang Sun, Jie Shi, Yong Fan, Peng Li, Lin Lu: Characteristics of multimodal brain connectomics in patients with schizophrenia and the unaffected first-degree relatives, Frontiers in Cell and Developmental Biology, section Molecular Medicine, Manuscript ID: 631864, Jan 25, 2021
Xiao Lin, Jiahui Deng, Guangheng Dong, Suxia Li, Ping Wu, Hongqiang Sun, Lin Liu, Jie Shi, Yong Fan, Lin Lu, Peng Li: Effects of Chronic Pharmacological Treatment on Functional Brain Network Connectivity in Patients with Schizophrenia, Psychiatry Research, 295(113338):1-6, Jan 2021
Zhicheng Jiao, Hongming Li, Ying Xiao, Charu Aggarwal, Maya Galperin-Aizenberg, Daniel Pryma, Charles B. Simone, II, Steven J. Feigenberg, Gary D. Kao, Yong Fan: Integration of risk survival measures estimated from pre- and posttreatment computed tomography scans improves stratification of early-stage non-small cell lung cancer patients treated with stereotactic body radiation therapy, International Journal of Radiation Oncology, Biology, Physics, 109(5), Pages 1647-16561, April 2021
Chintan Shah, Dhivya Srinivasan, Guray Erus, James Eric Schmitt, Adhish Agarwal, Monique E. Cho, Alan J. Lerner, William E. Haley, Manjula Kurella Tamura, Christos Davatzikos, Robert Nick Bryan, Yong Fan, Ilya M. Nasrallah: Changes in brain functional connectivity and cognition related to white matter lesion burden in hypertensive patients from the SPRINT trial, Neuroradiology, Jan 06, 2021
Biniyam G. Demissei, Yong Fan, Yiwen Qian, Henry G. Cheng, Amanda M. Smith, Kelsey Shimamoto, Natasha Vedage, Hari K. Narayan, Marielle Scherrer-Crosbie, Christos Davatzikos, Bonnie Ky: Left ventricular segmental strain and the prediction of cancer therapy-related cardiac dysfunction, The European Heart Journal – Cardiovascular Imaging, jeaa288, Nov 18, 2020
Rixing Jing, Yongsheng Han, Hewei Cheng, Yongzhu Han, Kai Wang, Daniel Weintraub, Yong Fan: Altered large-scale functional brain networks in neurological Wilson's disease. Brain Imaging and Behavior, 14:1445–1455, 2020
Hangfan Liu, Hongming Li, Mohamad Habes, Yuemeng Li, Pamela Boimel, James Janopaul-Naylor, Ying Xiao, Edgar Ben-Josef, and Yong Fan: Robust Collaborative Clustering of Subjects and Radiomic Features for Cancer Prognosis. IEEE Transactions on Biomedical Engineering, 67(10): 2735- 2744, Oct 2020
Jae-Hwan Jung, Seong-Jin Ji, Hongtu Zhu, Joseph G. Ibrahim, Yong Fan, Eunjee Lee: Penalized Logistic Regression using Functional Connectivity as Covariates with an Application to Mild Cognitive Impairment, Communications for Statistical Applications and Methods, 27: 603-624, Nov 2020
Mohamad Habes, Raymond Pomponio, Haochang Shou, Jimit Doshi, Elizabeth Mamourian, Guray Erus, Ilya Nasrallah, Lenore J. Launer, Tanweer Rashid, Murat Bilgel, Yong Fan, Jon B. Toledo, Kristine Yaffe, Aristeidis Sotiras, Dhivya Srinivasan, Mark Espeland, Colin Masters, Paul Maruff, Jurgen Fripp, Henry Völzk, Sterling C. Johnson, John C. Morris, Marilyn S. Albert, Michael I. Miller, R. Nick Bryan, Hans J. Grabe, Susan M. Resnick, David A. Wolk, Christos Davatzikos, for the iSTAGING consortium, the Preclinical AD consortium, the ADNI, and the CARDIA studies: The Brain Chart of Aging: Machine learning analytics reveals links between brain aging, white matter disease, amyloid burden and cognition in the iSTAGING consortium of 10,216 harmonized MR scans, Alzheimer's & Dementia: The Journal of the Alzheimer's Association, Sept 2020
Shi Yin, Qinmu Peng, Hongming Li, Zhengqiang Zhang, Xinge You, Katherine Fischer, Susan L. Furth, Yong Fan, Gregory E. Tasian: Multi-instance deep learning of ultrasound imaging data for pattern classification of congenital abnormalities of the kidney and urinary tract in children, Urology, 142:183-189, Aug 2020
Kun Zhao, Yanhui Ding, Ying Han, Yong Fan, Aaron F. Alexander-Bloch, Tong Han, Dan Jin, Bing Liu, Jie Lu, Chengyuan Song, Pan Wang, Dawei Wang, Qing Wang, Kaibin Xu, Hongwei Yang, Hongxiang Yao, Yuanjie Zheng, Chunshui Yu, Bo Zhou, Xinqing Zhang, Yuying Zhou, Tianzi Jiang, Xi Zhang, Yong Liu: Independent and reproducible hippocampal radiomic biomarkers for multisite Alzheimer's disease: diagnosis, longitudinal progress and biological basis. Science Bulletin, 65(13): 1103-1113, 15 July 2020
Vishnu M Bashyam, Guray Erus, Jimit Doshi, Mohamad Habes, Ilya Nasralah, Monica Truelove-Hill, Dhivya Srinivasan, Liz Mamourian, Raymond Pomponio, Yong Fan, Lenore J Launer, Colin L Masters, Paul Maruff, Chuanjun Zhuo, Henry Völzke, Sterling C Johnson, Jurgen Fripp, Nikolaos Koutsouleris, Theodore D Satterthwaite, Daniel Wolf, Raquel E Gur, Ruben C Gur, John Morris, Marilyn S Albert, Hans J Grabe, Susan Resnick, R Nick Bryan, David A Wolk, Haochang Shou, Christos Davatzikos, on behalf of the ISTAGING Consortium, the Preclinical Alzheimer’s disease Consortium, ADNI, and CARDIA studies: MRI signatures of brain age and disease over the lifespan based on a deep brain network and 14 468 individuals worldwide, Brain, awaa160, June 2020
Peng Li, Ri-Xing Jing, Rong-Jiang Zhao, Le Shi, Hong-Qiang Sun, Zengbo Ding, Xiao Lin, Lin Lu, Yong Fan: Association between functional and structural connectivity of the corticostriatal network in people with schizophrenia and unaffected first-degree relatives. Journal of Psychiatry and Neuroscience, 45(4): 190015, May 2020
Qinmu Peng, Minhui Ouyang, Jiaojian Wang, Qinlin Yu, Chenying Zhao, Michelle Slinger, Hongming Li, Yong Fan, Bo Hong, Hao Huang: Regularized-Ncut: Robust and homogeneous functional parcellation of neonate and adult brain networks. Artificial Intelligence in Medicine, May 2020
Qiang Zheng, Maxim Itkin, Yong Fan: Quantification of thoracic lymphatic flow patterns using dynamic contrast-enhanced MR lymphangiography. Radiology, 296(1): 202-207, May 2020
Zaixu Cui, Hongming Li, Cedric H Xia, Bart Larsen, Azeez Adebimpe, Graham L Baum, Matt Cieslak, Raquel E Gur, Ruben C Gur, Tyler M Moore, Desmond J Oathes, Aaron F Alexander-Bloch, Armin Raznahan, David R Roalf, Russell T Shinohara, Daniel H Wolf, Christos Davatzikos, Danielle S Bassett, Damien A Fair, Yong Fan, Theodore D Satterthwaite: Individual Variation in Functional Topography of Association Networks in Youth. Neuron, 106(2):340-353.e8, April 2020
Hewei Cheng, Lu Gao, Bo Hou, Feng, Xiaopeng Guo, Zihao Wang, Ming Feng, Bing Xing, and Yong Fan: Reversibility of Cerebral Blood Flow in Patients with Cushing's Disease after Surgery Treatment. Metabolism 104(154050): 1-7, March 2020
Antonia N. Kaczkurkin, Aristeidis Sotiras, Erica B. Baller, Ran Barzilay, Monica E. Calkins, Ganesh B. Chand, Zaixu Cui, Guray Erus, Yong Fan, Raquel E. Gur, Ruben C. Gur, Tyler M. Moore, David R. Roalf, Adon F.G. Rosen, Kosha Ruparel, Russell T. Shinohara, Erdem Varol, Daniel H. Wolf, Christos Davatzikos, Theodore D. Satterthwaite: Neurostructural Heterogeneity in Youths With Internalizing Symptoms, Biological Psychiatry, 87(5): 473-482, March 2020
Raymond Pomponio, Guray Erus, Mohamad Habes, Jimit Doshi, Dhivya Srinivasan, Elizabeth Mamourian, Vishnu Bashyam, Ilya M. Nasrallah, Theodore D. Satterthwaite, Yong Fan, Lenore J. Launer, Colin L. Masters, Paul Maruff, Chuanjun Zhuo, Henry Völzke, Sterling C. Johnson, Jurgen Fripp, Nikolaos Koutsouleris, Daniel H. Wolf, Raquel Gur, Ruben Gur, John Morris, Marilyn S. Albert, Hans J. Grabe, Susan M. Resnick, R. Nick Bryan, David A. Wolk, Russell T. Shinohara, Haochang Shou, Christos Davatzikos: Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan. NeuroImage 116450, Vol. 208, March 2020
Shi Yin, Qinmu Peng, Hongming Li, Zhengqiang Zhang, Xinge You, Katherine Fischer, Susan L Furth, Gregory E Tasian, Yong Fan: Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks. Medical Image Analysis, 101602, Vol. 60, Feb 2020
Cynthia HY Fu, Yong Fan, Christos Davatzikos: Widespread Morphometric Abnormalities in Major Depression: Neuroplasticity and Potential for Biomarker Development. Neuroimaging Clinics of North America, 30(1): 85-95, Feb 2020
Ganesh B. Chand, Dominic B. Dwyer, Guray Erus, Aristeidis Sotiras, Erdem Varol, Dhivya Srinivasan, Jimit Doshi, Raymond Pomponio, Alessandro Pigoni, Paola Dazzan, Rene S. Kahn, Hugo G. Schnack, Marcus V. Zanetti, Eva Meisenzahl, Geraldo F. Busatto, Benedicto Crespo-Facorro, Christos Pantelis, Stephen J. Wood, Chuanjun Zhuo, Russell T. Shinohara, Haochang Shou, Yong Fan, Ruben C. Gur, Raquel E. Gur, Theodore D. Satterthwaite, Nikolaos Koutsouleris, Daniel H. Wolf, Christos Davatzikos: Two Distinct Neuroanatomical Subtypes of Schizophrenia Revealed Using Machine Learning: Results from the PHENOM Consortium. Brain, Feb 2020
Monica Truelove-Hill, Guray Erus, Vishnu Bashyam, Erdem Varol, Chiharu Sako, Ruben Gur, Raquel Gur, Nikolaos Koutsouleris, Chuanjun Zhuo, Yong Fan, Daniel Wolf, Theodore Satterthwaite, and Christos Davatzikos: A multidimensional Neural Maturation Index reveals reproducible developmental patterns in children and adolescents. Journal of Neuroscience, 40 (6): 1265-1275, Feb 2020
Ianto Xi, Yijun Zhao, Robin Wang, Marcello Chang, Subhanik Purkayastha, Ken Chang, Raymond Huang, Alvin Silva, Martin Vallières, Peiman Habibollahi, Yong Fan, Jibei Zou, Terence Gade, Paul Zhang, Michael Soulen, Zishu Zhang, Harrison Bai, and S. Stavropoulos: Deep learning to distinguish benign from malignant renal lesions based on routine MR imaging: a preliminary study. Clinical Cancer Research, Jan 2020
Ariana L. Smith, Steven J. Weissbart, Siobhán M. Hartigan, Michel Bilello, Diane K. Newman, Alan J. Wein, Anna P. Malykhina, Guray Erus, Yong Fan: Association Between Urinary Symptom Severity and White Matter Plaque Distribution in Women with Multiple Sclerosis. Neurourology and Urodynamics, 39(1): 339-346, Jan 2020
Hancan Zhu, Zhenyu Tang, Hewei Cheng, Yihong Wu, Yong Fan: Multi-atlas label fusion with random local binary pattern features: Application to hippocampus segmentation. Scientific Reports 9 (16839): 1-14, Nov 2019
Hongming Li, Yong Fan: Interpretable, highly accurate brain decoding of subtly distinct brain states from functional MRI using intrinsic functional networks and long short-term memory recurrent neural networks. Neuroimage 202(15): 1-11, Nov 2019
Kuo Men, Huaizhi Geng, Haoyu Zhong, Yong Fan, Alexander Lin, Ying Xiao: A deep learning model for predicting xerostomia due to radiotherapy for head-and-neck squamous cell carcinoma in the RTOG 0522 clinical trial. International Journal of Radiation Oncology*Biology*Physics 105(2): 440-447, Oct 2019
Antonia N. Kaczkurkin, Aristeidis Sotiras, Erica B. Baller, Monica E. Calkins, Ganesh B. Chand, Zaixu Cui, Guray Erus, Yong Fan, Raquel E. Gur, Ruben C. Gur, Tyler M. Moore, David R. Roalf, Adon F.G. Rosen, Kosha Ruparel, Russell T. Shinohara, Erdem Varol, Daniel H. Wolf, Christos Davatzikos, Theodore D. Satterthwaite: Neurostructural Heterogeneity in Youth with Internalizing Symptoms. Biological Psychiatry, Sep 2019
Cynthia H.Y. Fu, Yong Fan, Christos Davatzikos: Addressing heterogeneity (and homogeneity) in treatment mechanisms in depression and the potential to develop diagnostic and predictive biomarkers. NeuroImage: Clinical, 24(101997): 1-7, Sep 2019
Hongming Li, Mohamad Habes, David A. Wolk, Yong Fan: A deep learning model for early prediction of Alzheimer's disease dementia based on hippocampal magnetic resonance imaging data. Alzheimer's & Dementia: The Journal of the Alzheimer's Association 15(8): 1059-1070, Aug 2019
Rixing Jing, Peng Li, Zengbo Ding, Xiao Lin, Rongjiang Zhao, Le Shi, Hao Yan, Jinmin Liao, Chuanjun Zhuo, Lin Lu, Yong Fan: Machine learning identifies unaffected first-degree relatives with functional network patterns and cognitive impairment similar to those of schizophrenia patients. Human Brain Mapping 40(13): 3930-3939, Aug 2019
Teresa Martin-Carreras, Hongming Li, Kumarasen Cooper, Yong Fan, Ronnie Sebro: Radiomic features from MRI distinguish myxomas from myxofibrosarcomas. BMC Medical Imaging 19(67): 1-9, Aug 2019
Christos Davatzikos, Aristeidis Sotiras, Yong Fan, Mohamad Habes, Guray Erus, Saima Rathore, Spyridon Bakas, Rhea Chitalia, Aimilia Gastounioti, and Despina Kontos: Precision diagnostics based on machine learning-derived imaging signatures. Magnetic Resonance Imaging 64: 49-61, Dec 2019 Notes: all authors contributed equally
Ke Nie, Hania Al-Hallaq, X. Allen Li, Stanley H. Benedict, Jason W. Sohn, Jean M. Moran, Yong Fan, Mi Huang, Michael V. Knopp, Jeff M. Michalski, James Monroe, Ceferino Obcemea, Christina I. Tsien, Timothy Solberg, Jackie Wu, Ping Xia, Ying Xiao, Issam El Naqa: NCTN Assessment on Current Applications of Radiomics in Oncology. International Journal of Radiation Oncology • Biology • Physics 104(2): 302-315, Jun 2019
Reagan R. Wetherill, Hengyi Rao, Nathan Hager, Jieqiong Wang, Teresa R. Franklin, Yong Fan: Classifying and Characterizing Nicotine Use Disorder with High Accuracy Using Machine Learning and Resting-State fMRI. Addiction Biology 24(4): 811-821, Jun 2019
Qiang Zheng, Susan L. Furth, Gregory E. Tasian, Yong Fan: Computer aided diagnosis of congenital abnormalities of the kidney and urinary tract in children based on ultrasound imaging data by integrating texture image features and deep transfer learning image features. Journal of Pediatric Urology 15(1): 75.e1-75.e7, Feb 2019
Jon B. Toledo, Mohamad Habes, Aristeidis Sotiras, Maria Bjerke, Yong Fan, Michael W. Weiner, Leslie M. Shaw, Christos Davatzikos, and John Q. Trojanowski: APOE effect on Aβ PET spatial distribution, deposition rate and cut-points. Journal of Alzheimer's Disease 69(3): 783-793, Mar 2019
Kuo Men, Huaizhi Geng, Chingyun Cheng, Haoyu Zhong, Mi Huang, Yong Fan, John P. Plastaras, Alexander Lin, and Ying Xiao: More accurate and efficient segmentation of organs-at-risk in radiotherapy with Convolutional Neural Networks Cascades. Medical Physics 46(1): 286-292, Jan 2019
Hongming Li, Maya Galperin-Aizenberg, Daniel Pryma, Charles B. Simone II, and Yong Fan: Unsupervised machine learning of radiomic features for predicting treatment response and overall survival of early stage non-small cell lung cancer patients treated with stereotactic body radiation therapy. Radiotherapy & Oncology 129(2): 218-226, Nov 2018
Kuo Men, Pamela Boimel, James Janopaul-Naylor, Chingyun Cheng, Haoyu Zhong, Mi Huang, Huaizhi Geng, Yong Fan, John P. Plastaras, Edgar Ben-Josef, Ying Xiao: A study of positioning orientation effect on segmentation accuracy using convolutional neural networks for rectal cancer. Journal of Applied Clinical Medical Physics 20(1): 110-117, Nov 2018
Xiaofeng Zhu, Weihong Zhang, Yong Fan: A robust reduced rank graph regression method for neuroimaging genetics analysis. Neuroinformatics 16(3-4): 351-361, Oct 2018
Qiang Zheng, Yihong Wu, Yong Fan: Integrating semi-supervised and supervised learning methods for label fusion in multi-atlas based image segmentation. Frontiers in Neuroinformatics 12(69): 1-11, Oct 2018
Qiang Zheng, Steven Warner, Gregory Tasian, Yong Fan: A dynamic graph-cuts method with integrated multiple feature maps for segmenting kidneys in ultrasound images. Academic Radiology 25(9): 1136-1145, Sep 2018
Kuo Men, Pamela Boimel, James Janopaul-Naylor, Haoyu Zhong, Mi Huang, Huaizhi Geng, Chingyun Cheng, Yong Fan, John P Plastaras, Edgar Ben-Josef, and Ying Xiao: Cascaded atrous convolution and spatial pyramid pooling for more accurate tumor target segmentation for rectal cancer radiotherapy. Physics in medicine and biology 63(185016): 1-11, Sep 2018
Jing Li, Zhentao Zuo, Xuewei Zhang, Xiali Shao, Jie Lu, Rong Xue, Yong Fan, Yuzhou Guan, and Weihong Zhang: Excitatory Repetitive Transcranial Magnetic Stimulation Induces Contralesional Cortico-Cerebellar Pathways After Acute Ischemic Stroke: A Preliminary DTI Study. Frontiers in Behavioral Neuroscience 12(160): 1-8, Jul 2018
Yan Sun, Yang Zhang, Dai Zhang, Suhua Chang, Rixing Jin, Weihua Yue, Lin Lu, Yankun Sun, Yong Fan*, and Jie Shi*: GABRA2 rs279858-linked variants are associated with disrupted structural connectome of the reward circuits in heroin abusers. Translational Psychiatry 8(138): 1-10, Jul 2018
Martin Rozycki, Theodore D. Satterthwaite, Nikolaos Koutsouleris, Guray Erus, Jimit Doshi, Daniel H. Wolf, Yong Fan, Raquel E. Gur, Ruben C. Gur, Eva M. Meisenzahl, Chuanjun Zhuo, Hong Ying, Hao Yan, Weihua Yue, Dai Zhang, and Christos Davatzikos: Multisite Machine Learning Analysis Provides a Robust Structural Imaging Signature of Schizophrenia Detectable Across Diverse Patient Populations and Within Individuals. Schizophrenia Bulletin 44(5): 1035-1044, Aug 2018
Qiongmin Ma, Tianhao Zhang, Marcus V.Zanetti, Hui Shen, Theodore D. Satterthwaite, Daniel H. Wolf, Raquel E. Gur, Yong Fan, Dewen Hu, Geraldo F. Busatto, Christos Davatzikos: Classification of multi-site MR images in the presence of heterogeneity using multi-task learning. Neuroimage: Clinical 19:476-486, May 2018
Xianchang Zhang, Hewei Cheng, Zhentao Zuo, Ke Zhou, Fei Cong, Bo Wang, Yan Zhuo, Lin Chen, Rong Xue, and Yong Fan: Individualized functional parcellation of the human amygdala using a semi-supervised clustering method: a 7T resting state fMRI study. Frontiers in Neuroscience 12(270): 1-17, Apr 2018
Christos Davatzikos, Saima Rathore, Spyridon Bakas, Sarthak Pati, Mark Bergman, Ratheesh Kalarot, Patmaa Sridharan, Aimilia Gastounioti, Nariman Jahani, Eric Cohen, Hamed Akbari, Birkan Tunc, Jimit Doshi, Drew Parker, Michael Hsieh, Aristeidis Sotiras, Hongming Li, Yangming Ou, Robert K Doot, Michel Bilello, Yong Fan, Russell T Shinohara, Paul Yushkevich, Ragini Verma, Despina Kontos: Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome. J Med Imaging (Bellingham) 5(1): 011018, Jan 2018
Liping Fu, Linwen Liu, Jin-ming Zhang, Baixuan Xu, Yong Fan*, and Jiahe Tian*: Brain network alterations in Alzheimer's disease identified by early-phase PIB-PET. Contrast Media & Molecular Imaging 2018(6830105): 1-10, Jan 2018
Xiaomei Zhao, Yihong Wu, Guidong Song, Zhenye Li, Yazhuo Zhang, and Yong Fan: A deep learning model integrating FCNNs and CRFs for brain tumor segmentation. Medical Image Analysis 43: 98-111, Jan 2018
Hanyang Peng and Yong Fan: Feature Selection by Optimizing a Lower Bound of Conditional Mutual Information. Information Sciences 418-419: 652-667, Dec 2017
Hongming Li, Theodore D. Satterthwaite, and Yong Fan: Large-scale sparse functional networks from resting state fMRI. Neuroimage 156: 1-13, Aug 2017
Zhenyu Tang, Yihong Wu, and Yong Fan: Groupwise Registration of MR Brain Images with tumors. Physics in Medicine and Biology 62(17): 6853-6868, Aug 2017
Peng Li, Ri-xing Jing, Rong-jiang Zhao, Zeng-bo Ding, Le Shi, Hong-qiang Sun, Xiao Lin, Teng-teng Fan, Wen-tian Dong, Yong Fan*, and Lin Lu*: Electroconvulsive therapy-induced brain functional connectivity predicts therapeutic efficacy in patients with schizophrenia: a multivariate pattern recognition study. npj Schizophrenia 3(21): 1-9, May 2017
Yan Sun, Linwen Liu, Jiajia Feng, Weihua Yue, Lin Lu, Yong Fan*, and Jie Shi*: MAOA rs1137070 and heroin addiction interactively alter gray matter volume of the salience network. Scientific Reports 7: 1-7, Mar 2017 Notes: *The authors share senior authorship.
Hancan Zhu, Hewei Cheng, Xuesong Yang, and Yong Fan: Metric Learning for Multi-atlas based Segmentation of Hippocampus. Neuroinformatics 15(1):41-50, Jan 2017
Jing Li, Xue-Wei Zhang, Zhen-Tao Zuo, Jie Lu, Chun-Ling Meng, Hong-Ying Fang, Rong Xue, Yong Fan, Yu-Zhou Guan, and Wei-Hong Zhang: Cerebral Functional Reorganization in Ischemic Stroke after Repetitive Transcranial Magnetic Stimulation: an fMRI Study. CNS Neuroscience & Therapeutics 22(12): 952-960, Dec 2016
Zhenyu Tang, Yong Fan: Groupwise Image Registration Guided by a Dynamic Digraph of Images. Neuroinformatics. Springer, 14: 131-145, Apr 2016
Yongsheng Han, Hewei Cheng, Jon B. Toledo, Xun Wang, Bo Li, Yongzhu Han, Kai Wang, Yong Fan: Impaired functional default mode network in patients with mild neurological Wilson's disease. Parkinsonism and Related Disorders 30: 46-51, Sep 2016
Yu Zhang, Svenja Caspers, Lingzhong Fan, Yong Fan, Ming Song, Cirong Liu, Yin Mo, Christian Roski, Simon Eickhoff, Katrin Amunts, and Tianzi Jiang: Robust brain parcellation using sparse representation on resting-state fMRI. Brain Struct Funct. Springer, 220(6): 3565-79, Nov 2015
Linwen Liu, Liping Fu, Xi Zhang, Jinming Zhang, Xiaojun Zhang, Baixuan Xu, Jiahe Tian*, and Yong Fan*: Combination of dynamic 11C-PIB PET and structural MRI improves diagnosis of Alzheimer's disease. Psychiatry Research: Neuroimaging, 233(2): 131-140, Aug 2015 Notes: *The authors share senior authorship.
Yinyan Wang, Xing Fan, Hongming Li, Zhiguo Lin, Hongbo Bao, Shaowu Li, Lei Wang, Tianzi Jiang, Yong Fan*, Tao Jiang*: Tumor border sharpness correlates with HLA-G expression in low-grade gliomas. Journal of Neuroimmunology 282: 1-6, May 2015
Dehan Kong, Kelly S. Giovanello, Yalin Wang, Weili Lin, Eunjee Lee, Yong Fan, P. Murali Doraiswamy, and Hongtu Zhu: Predicting Alzheimer's disease using combined imaging-whole genome SNP data. Journal of Alzheimer's Disease 46(3): 695-702, Jun 2015.
Yongfu Hao, Tianyao Wang, Xinqing Zhang, Yunyun Duan, Chunshui Yu, Tianzi Jiang, and Yong Fan: Local Label Learning (LLL) for Subcortical Structure Segmentation: Application to Hippocampus Segmentation. Human Brain Mapping 35(6): 2674-2697, Jun 2014.
Haitao Lu, Haiyan Wu, Hewei Cheng, Dongjie Wei, Xiaoyan Wang, Yong Fan, Hao Zhang, and Tong Zhang: Improvement of white matter and functional connectivity abnormalities by repetitive transcranial magnetic stimulation in crossed aphasia in dextral. International Journal of Clinical and Experimental Medicine 7(10): 3659-3668, Oct 2014.
Hewei Cheng, Hong Wu, and Yong Fan: Optimizing affinity measures for parcellating brain structures based on resting state fMRI data: A validation on medial superior frontal cortex. Journal of Neuroscience Methods 237: 90-102, Nov 2014.
Liping Fu, Linwen Liu, Jinming Zhang, Baixuan Xu, Yong Fan, and Jiahe Tian: Comparison of dual-biomarker PIB-PET and dual-tracer PET in AD diagnosis. European Radiology 24(11): 2800-2809, Nov 2014.
Di Jiang, Yuhui Du, Hewei Cheng, Tianzi Jiang, and Yong Fan: Groupwise spatial normalization of fMRI data based on multi-range functional connectivity patterns. Neuroimage 82: 355-372, Nov 2013.
Yuhui Du and Yong Fan: Group information guided ICA for fMRI data analysis. Neuroimage 69(1): 157-197, Apr 2013.
Liping Fu, Hongming Li, Hui Wang, Baixuan Xu, Yong Fan, and Jiahe Tian: SUVmax/THKmax as a biomarker for distinguishing advanced gastric carcinoma from primary gastric lymphoma. PLoS One 7(12): e50914:1-7, Dec 2012.
Martha Skup, Hongtu Zhu, Yaping Wang, Kelly S. Giovanello, Ja-an Lin, Dinggang Shen, Feng Shi, Wei Gao, Weili Lin, Yong Fan, and Heping Zhang: Sex differences in grey matter atrophy patterns among AD and aMCI patients: Results from ADNI. Neuroimage 56(3): 890-906, Feb 2011.
Yong Fan, Feng Shi, Jeffrey Keith Smith, Weili Lin, John H. Gilmore, and Dinggang Shen: Brain anatomical networks in early human brain development. Neuroimage 54(3): 1862-1871, Feb 2011.
Feng Shi, Dinggang Shen, Pew-Thian Yap, Yong Fan, JieZhi Cheng, Hongyu An, Lawrence L. Wald, Guido Gerig, John H. Gilmore, and Weili Lin: CENTS: Cortical Enhanced Neonatal Tissue segmentation. Human Brain Mapping 32(3): 382-396, Mar 2011.
Yong Fan, Yong Liu, Hong Wu, Yihui Hao, Haihong Liu, Zhening Liu, and Tianzi Jiang: Discriminant analysis of functional connectivity patterns on Grassmann manifold. Neuroimage 56(4): 2058-67, Jun 2011.
Pew-Thian Yap, Yong Fan, Yasheng Chen, John H Gilmore, Weili Lin, Dinggang Shen: Development trends of white matter connectivity in the first years of life. PloS One 6(9): e24678:1-15, Sep 2011.
Feng Shi, Pew-Thian Yap, Yong Fan, John H. Gilmore, Weili Lin, Dinggang Shen: Construction of multi-region-multi-reference atlases for neonatal brain MRI segmentation. Neuroimage 51(2): 684-693, Jun 2010.
Ying Wang, Yong Fan, Priyanka Bhatt, and Christos Davatzikos: High-dimensional pattern regression using machine learning: From medical images to continuous clinical variables. Neuroimage 50(4): 1519-1535, May 2010
Feng Shi, Yong Fan, Songyuan Tang, John H. Gilmore, Weili Lin, Dinggang Shen: Neonatal brain image segmentation in longitudinal MRI studies. Neuroimage 49(1): 391-400, Jan 2010.
Songyuan Tang, Yong Fan, Guorong Wu, Minjeong Kim, and Dinggang Shen: RABBIT: rapid alignment of brains by building intermediate templates. Neuroimage 47(4): 1277-1287, Oct 2009
Christos Davatzikos, Feng Xu, Yan An, Yong Fan, and Susan Resnick: Longitudinal progression of Alzheimer’s-like patterns of atrophy in normal older adults: the SPARE-AD index. Brain 132(8): 2026-2035, Aug 2009
Yuanjie Zheng, Sarah Englander, Sajjad Baloch, Evangelia I. Zacharaki, Yong Fan, Mitchell D. Schnall, Dinggang Shen: STEP: Spatiotemporal enhancement pattern for MR-based Breast Tumor Diagnosis. Medical Physics 36(7): 3192-3204, Jul 2009
Chandan Misra, Yong Fan, and Christos Davatzikos: Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of short-term conversion to AD: Results from ADNI. Neuroimage 44(4): 1415-1422, Feb 2009
Yong Fan, Susan M. Resnick, Xiaoying Wu, and Christos Davatzikos: Structural and functional biomarkers of prodromal Alzheimer's disease: A high-dimensional pattern classification study. Neuroimage 41(2): 277-285, Jun 2008 Notes: Neuroimage Editor's Choice Award, the Organization for Human Brain Mapping.
Yong Fan, Raquel E. Gur, Ruben C. Gur, Xiaoying Wu, Dinggang Shen, Monica E. Calkins, and Christos Davatzikos: Unaffected family members and schizophrenia patients share brain structure patterns: A high-dimensional pattern classification study. Biological Psychiatry 63(1): 118-124, Jan 2008
Yong Fan, Nematollah Batmanghelich, Chris M. Clark, and Christos Davatzikos: Spatial patterns of brain atrophy in MCI patients, identified via high-dimensional pattern classification, predict subsequent cognitive decline. Neuroimage 39(4): 1731-1743, Feb 2008 Notes: Neuroimage One of the Top Ten Cited Articles of 2008
Christos Davatzikos, Yong Fan, Xiaoying Wu, Dinggang Shen, and Susan M Resnick: Detection of prodromal Alzheimer's disease via pattern classification of Magnetic Resonance Imaging. Neurobiology of Aging 29(4): 514-523, Apr 2008
Jiongjiong Wang, Marc Korczykowski, Hengyi Rao, Yong Fan, John Pluta, Ruben C. Gur, Bruce S. McEwen, and John A. Detre: Gender difference in neural response to psychological stress. Social Cognitive and Affective Neuroscience 2: 227-239, Sep 2007
Yong Fan, Hengyi Rao, Hallam Hurt, Joan Giannetta, Marc Korczykowski, David Shera, Brian B. Avants, James C. Gee, Jiongjiong Wang, and Dinggang Shen: Multivariate examination of brain abnormality using both structural and functional MRI. Neuroimage 36: 1189-1199, Jul 2007
Yong Fan, Dinggang Shen, Ruben C. Gur, Raquel E. Gur, Christos Davatzikos: COMPARE: Classification of morphological patterns using adaptive regional elements. IEEE Transactions on Medical Imaging 26(1): 93-105, Jan 2007
C. Davatzikos, K. Ruparel, Yong Fan, D. Shen, M. Acharyya, J. Loughead, R.C. Gur, and D. Langleben: Classifying spatial patterns of brain activity with machine learning methods: Application to lie detection. Neuroimage 28: 663-668, Nov 2005
Christos Davatzikos, Dinggang Shen, Ruben C. Gur, Xiaoying Wu, Dengfeng Liu, Yong Fan, Paul Hughett, Bruce I. Turetsky, Raquel E. Gur: Whole-brain morphometric study of schizophrenia revealing a spatially complex set of focal abnormalities. Archives of General Psychiatry 62(11): 1218-1227, Nov 2005
Jianwei Yang, Lifeng Liu, Tianzi Jiang, and Yong Fan: A modified Gabor filter design method for fingerprint image enhancement. Pattern Recognition Letters 24(12): 1805-1817, Aug 2003
Yong Fan, Tianzi Jiang, and David J. Evans: Volumetric segmentation of brain images using parallel genetic algorithms. IEEE Trans Med Imaging 21(8): 904-909, Dec 2002
Yong Fan, Tianzi Jiang, and David J. Evans: The parallel genetic algorithm for electromagnetic inverse scattering of a conductor. International Journal of Computer Mathematics 79(5): 573-586, Jan 2002
David J. Evans, Yong Fan, and Tianzi Jiang: On the accelerated Richardson method (ARM) for solving positive definite linear systems. Neural, Parallel & Scientific Computations 10(2): 189-198, Jun 2002
Tianzi Jiang, Faguo Yang, Yong Fan, and David J. Evans: A Parallel Genetic Algorithm for Cell Image Segmentation. Electronic Notes in Theoretical Computer Science 46: 214-224, Aug 2001