Journal Publications
- Keller AS, Moore TM, Luo A, Visoki E, Gataviņš MM, Shetty A, Cui Z, Fan Y, Feczko E, Houghton A, Li H, Mackey AP, Miranda-Dominguez O, Pines A, Shinohara RT, Sun KY, Fair DA, Satterthwaite TD, Barzilay R. A general exposome factor explains individual differences in functional brain network topography and cognition in youth, Developmental Cognitive Neuroscience, 2024: 66: 101370, April 2024, https://doi.org/10.1016/j.dcn.2024.101370
- Cheng H, Gao L, Jing R, Hou B, Guo X, Yao Y, Feng M, Xing B, Feng F, Fan Y. Reversibility of Impaired Large-Scale Functional Brain Networks in Cushing's Disease after Surgery Treatment: A Longitudinal Study. Neuroendocrinology. 2024;114(3):250-262. doi: 10.1159/000534789. Epub 2023 Nov 1. PMID: 37913760; PMCID: PMC10911171. https://doi.org/10.1159/000534789
- Skampardoni I, Nasrallah IM, Abdulkadir A, Wen J, Melhem R, Mamourian E, Erus G, Doshi J, Singh A, Yang Z, Cui Y, Hwang G, Ren Z, Pomponio R, Srinivasan D, Govindarajan ST, Parmpi P, Wittfeld K, Grabe HJ, Bülow R, Frenzel S, Tosun D, Bilgel M, An Y, Marcus DS, LaMontagne P, Heckbert SR, Austin TR, Launer LJ, Sotiras A, Espeland MA, Masters CL, Maruff P, Fripp J, Johnson SC, Morris JC, Albert MS, Bryan RN, Yaffe K, Völzke H, Ferrucci L, Benzinger TLS, Ezzati A, Shinohara RT, Fan Y, Resnick SM, Habes M, Wolk D, Shou H, Nikita K, Davatzikos C. Genetic and Clinical Correlates of AI-Based Brain Aging Patterns in Cognitively Unimpaired Individuals. JAMA Psychiatry. 2024 Feb 14:e235599. doi: 10.1001/jamapsychiatry.2023.5599. Epub ahead of print. PMID: 38353984; PMCID: PMC10867779. https://doi.org/10.1001/jamapsychiatry.2023.5599
- Lin X, Huo Y, Wang Q, Liu G, Shi J, Fan Y, Lu L, Jing R, Li P. Using normative modeling to assess pharmacological treatment effect on brain state in patients with schizophrenia. Cereb Cortex. 2024 Jan 31;34(2):bhae003. doi: 10.1093/cercor/bhae003. PMID: 38252996. https://doi.org/10.1093/cercor/bhae003
- Fu CHY, Antoniades M, Erus G, Garcia JA, Fan Y, Arnone D, Arnott SR, Chen T, Choi KS, Fatt CC, Frey BN, Frokjaer VG, Ganz M, Godlewska BR, Hassel S, Ho K, McIntosh AM, Qin K, Rotzinger S, Sacchet MD, Savitz J, Shou H, Singh A, Stolicyn A, Strigo I, Strother SC, Tosun D, Victor TA, Wei D, Wise T, Zahn R, Anderson IM, Craighead WD, Deakin JFW, Dunlop BW, Elliott R, Gong Q, Gotlib IH, Harmer CJ, Kennedy SH, Knudsen GM, Mayberg HS, Paulus MP, Qiu J, Trivedi MH, Whalley HC, Yan C, Young AH, Davatzikos D. Neuroanatomical dimensions in medication-free individuals with major depressive disorder and treatment response to SSRI antidepressant medications or placebo. Nat. Mental Health 2, 164–176 (2024). https://doi.org/10.1038/s44220-023-00187-w
- Li Y, Joaquim MR, Pickup S, Song HK, Zhou R, Fan Y. Learning ADC maps from accelerated radial k-space diffusion-weighted MRI in mice using a deep CNN-transformer model. Magn Reson Med. 2024 Jan;91(1):105-117. doi: 10.1002/mrm.29833. Epub 2023 Aug 20. PMID: 37598398; PMCID: PMC10691280. https://doi.org/10.1002/mrm.29833
- Wen J, Nasrallah IM, Abdulkadir A, Satterthwaite TD, Yang Z, Erus G, Robert-Fitzgerald T, Singh A, Sotiras A, Boquet-Pujadas A, Mamourian E, Doshi J, Cui Y, Srinivasan D, Skampardoni I, Chen J, Hwang G, Bergman M, Bao J, Veturi Y, Zhou Z, Yang S, Dazzan P, Kahn RS, Schnack HG, Zanetti MV, Meisenzahl E, Busatto GF, Crespo-Facorro B, Pantelis C, Wood SJ, Zhuo C, Shinohara RT, Gur RC, Gur RE, Koutsouleris N, Wolf DH, Saykin AJ, Ritchie MD, Shen L, Thompson PM, Colliot O, Wittfeld K, Grabe HJ, Tosun D, Bilgel M, An Y, Marcus DS, LaMontagne P, Heckbert SR, Austin TR, Launer LJ, Espeland M, Masters CL, Maruff P, Fripp J, Johnson SC, Morris JC, Albert MS, Bryan RN, Resnick SM, Fan Y, Habes M, Wolk D, Shou H, Davatzikos C. Genomic loci influence patterns of structural covariance in the human brain. Proc Natl Acad Sci U S A. 2023 Dec 26;120(52):e2300842120. doi: 10.1073/pnas.2300842120. Epub 2023 Dec 21. PMID: 38127979; PMCID: PMC10756284. https://doi.org/10.1073/pnas.2300842120
- Keller AS, Pines AR, Shanmugan S, Sydnor VJ, Cui Z, Bertolero MA, Barzilay R, Alexander-Bloch AF, Byington N, Chen A, Conan GM, Davatzikos C, Feczko E, Hendrickson TJ, Houghton A, Larsen B, Li H, Miranda-Dominguez O, Roalf DR, Perrone A, Shetty A, Shinohara RT, Fan Y, Fair DA, Satterthwaite TD. Personalized functional brain network topography is associated with individual differences in youth cognition. Nat Commun. 2023 Dec 18;14(1):8411. doi: 10.1038/s41467-023-44087-0. PMID: 38110396; PMCID: PMC10728159. https://doi.org/10.1038/s41467-023-44087-0
- Dannhauer M, Gomez LJ, Robins PL, Wang D, Hasan NI, Thielscher A, Siebner HR, Fan Y, Deng ZD. Electric Field Modeling in Personalizing Transcranial Magnetic Stimulation Interventions. Biol Psychiatry. 2024 Mar 15;95(6):494-501. doi: 10.1016/j.biopsych.2023.11.022. Epub 2023 Dec 5. PMID: 38061463; PMCID: PMC10922371. https://doi.org/10.1016/j.biopsych.2023.11.022
- Lee SH, Geng H, Arnold J, Caruana R, Fan Y, Rosen MA, Apte AP, Deasy JO, Bradley JD, Xiao Y. Interpretable Machine Learning for Choosing Radiation Dose-volume Constraints on Cardio-pulmonary Substructures Associated with Overall Survival in NRG Oncology RTOG 0617. Int J Radiat Oncol Biol Phys. 2023 Jun 19:S0360-3016(23)00591-6. doi: 10.1016/j.ijrobp.2023.06.009. Epub ahead of print. PMID: 37343707. https://doi.org/10.1016/j.ijrobp.2023.06.009
- Ostrowski DA, Logan JR, Antony M, Broms R, Weiss DA, Van Batavia J, Long CJ, Smith AL, Zderic SA, Edwins RC, Pominville RJ, Hannick JH, Woo LL, Fan Y, Tasian GE, Weaver JK. Automated Society of Fetal Urology (SFU) grading of hydronephrosis on ultrasound imaging using a convolutional neural network. J Pediatr Urol. 2023 Oct;19(5):566.e1-566.e8. doi: 10.1016/j.jpurol.2023.05.014. Epub 2023 May 26. PMID: 37286464. https://doi.org/10.1016/j.jpurol.2023.05.014
- Weaver JK, Logan J, Broms R, Antony M, Rickard M, Erdman L, Edwins R, Pominville R, Hannick J, Woo L, Viteri B, D'Souza N, Viswanath SE, Flask C, Lorenzo A, Fan Y, Tasian GE. Deep learning of renal scans in children with antenatal hydronephrosis. J Pediatr Urol. 2023 Oct;19(5):514.e1-514.e7. doi: 10.1016/j.jpurol.2022.12.017. Epub 2023 Jan 6. PMID: 36775719. https://doi.org/10.1016/j.jpurol.2022.12.017
- Jing R, Lin X, Ding Z, Chang S, Shi L, Liu L, Wang Q, Si J, Yu M, Zhuo C, Shi J, Li P, Fan Y, Lu L. Heterogeneous brain dynamic functional connectivity patterns in first-episode drug-naive patients with major depressive disorder. Hum Brain Mapp. 2023 Jun 1;44(8):3112-3122. doi: 10.1002/hbm.26266. Epub 2023 Mar 15. PMID: 36919400; PMCID: PMC10171501. https://doi.org/10.1002/hbm.26266
- Pati S, Thakur SP, Hamamcı IE, Baid U, Baheti B, Bhalerao M, Güley O, Mouchtaris S, Lang D, Thermos S, Gotkowski K, González C, Grenko C, Getka A, Edwards B, Sheller M, Wu J, Karkada D, Panchumarthy R, Ahluwalia V, Zou C, Bashyam V, Li Y, Haghighi B, Chitalia R, Abousamra S, Kurc TM, Gastounioti A, Er S, Bergman M, Saltz JH, Fan Y, Shah P, Mukhopadhyay A, Tsaftaris SA, Menze B, Davatzikos C, Kontos D, Karargyris A, Umeton R, Mattson P, Bakas S. GaNDLF: the generally nuanced deep learning framework for scalable end-to-end clinical workflows. Commun Eng. 2023 May; 2(23). https://doi.org/10.1038/s44172-023-00066-3
- Shah C, Srinivasan D, Erus G, Kurella Tamura M, Habes M, Detre JA, Haley WE, Lerner AJ, Wright CB, Wright JT Jr, Oparil S, Kritchevsky SB, Punzi HA, Rastogi A, Malhotra R, Still CH, Williamson JD, Bryan RN, Fan Y, Nasrallah IM. Intensive Blood Pressure Management Preserves Functional Connectivity in Patients with Hypertension from the Systolic Blood Pressure Intervention Randomized Trial. AJNR Am J Neuroradiol. 2023 May;44(5):582-588. doi: 10.3174/ajnr.A7852. Epub 2023 Apr 27. PMID: 37105682; PMCID: PMC10171386. https://doi.org/10.3174/ajnr.a7852
- Hwang G, Wen J, Sotardi S, Brodkin ES, Chand GB, Dwyer DB, Erus G, Doshi J, Singhal P, Srinivasan D, Varol E, Sotiras A, Dazzan P, Kahn RS, Schnack HG, Zanetti MV, Meisenzahl E, Busatto GF, Crespo-Facorro B, Pantelis C, Wood SJ, Zhuo C, Shinohara RT, Shou H, Fan Y, Di Martino A, Koutsouleris N, Gur RE, Gur RC, Satterthwaite TD, Wolf DH, Davatzikos C. Assessment of Neuroanatomical Endophenotypes of Autism Spectrum Disorder and Association With Characteristics of Individuals With Schizophrenia and the General Population. JAMA Psychiatry. 2023 May 1;80(5):498-507. doi: 10.1001/jamapsychiatry.2023.0409. PMID: 37017948; PMCID: PMC10157419. https://doi.org/10.1001/jamapsychiatry.2023.0409
- Dwyer DB, Chand GB, Pigoni A, Khuntia A, Wen J, Antoniades M, Hwang G, Erus G, Doshi J, Srinivasan D, Varol E, Kahn RS, Schnack HG, Meisenzahl E, Wood SJ, Zhuo C, Sotiras A, Shinohara RT, Shou H, Fan Y, Schaulfelberger M, Rosa P, Lalousis PA, Upthegrove R, Kaczkurkin AN, Moore TM, Nelson B, Gur RE, Gur RC, Ritchie MD, Satterthwaite TD, Murray RM, Di Forti M, Ciufolini S, Zanetti MV, Wolf DH, Pantelis C, Crespo-Facorro B, Busatto GF, Davatzikos C, Koutsouleris N, Dazzan P. Psychosis brain subtypes validated in first-episode cohorts and related to illness remission: results from the PHENOM consortium. Mol Psychiatry. 2023 May 5. doi: 10.1038/s41380-023-02069-0. Epub ahead of print. PMID: 37147389. https://doi.org/10.1038/s41380-023-02069-0
- Weaver JK, Martin-Olenski M, Logan J, Broms R, Antony M, Van Batavia J, Weiss DA, Long CJ, Smith AL, Zderic SA, Huang J, Fan Y, Tasian GE. Deep Learning of Videourodynamics to Classify Bladder Dysfunction Severity in Patients With Spina Bifida. J Urol. 2023 May;209(5):994-1003. doi: 10.1097/JU.0000000000003267. Epub 2023 Feb 14. PMID: 36787376. https://doi.org/10.1097/ju.0000000000003267
- Pines A, Keller AS, Larsen B, Bertolero M, Ashourvan A, Bassett DS, Cieslak M, Covitz S, Fan Y, Feczko E, Houghton A, Rueter AR, Saggar M, Shafiei G, Tapera TM, Vogel J, Weinstein SM, Shinohara RT, Williams LM, Fair DA, Satterthwaite TD. Development of top-down cortical propagations in youth. Neuron. 2023 Apr 19;111(8):1316-1330.e5. doi: 10.1016/j.neuron.2023.01.014. Epub 2023 Feb 17. PMID: 36803653; PMCID: PMC10121821. https://doi.org/10.1016/j.neuron.2023.01.014
- Lin X, Jing R, Chang S, Liu L, Wang Q, Zhuo C, Shi J, Fan Y, Lu L, Li P. Understanding the heterogeneity of dynamic functional connectivity patterns in first-episode drug naïve depression using normative models. J Affect Disord. 2023 Apr 14;327:217-225. doi: 10.1016/j.jad.2023.01.109. Epub 2023 Feb 2. PMID: 36736793. https://doi.org/10.1016/j.jad.2023.01.109
- Zhou Z, Li H, Srinivasan D, Abdulkadir A, Nasrallah IM, Wen J, Doshi J, Erus G, Mamourian E, Bryan NR, Wolk DA, Beason-Held L, Resnick SM, Satterthwaite TD, Davatzikos C, Shou H, Fan Y; ISTAGING Consortium. Multiscale functional connectivity patterns of the aging brain learned from harmonized rsfMRI data of the multi-cohort iSTAGING study. Neuroimage. 2023 Apr 1;269:119911. doi: 10.1016/j.neuroimage.2023.119911. Epub 2023 Jan 30. PMID: 36731813; PMCID: PMC9992322. https://doi.org/10.1016/j.neuroimage.2023.119911
- Sydnor VJ, Larsen B, Seidlitz J, Adebimpe A, Alexander-Bloch AF, Bassett DS, Bertolero MA, Cieslak M, Covitz S, Fan Y, Gur RE, Gur RC, Mackey AP, Moore TM, Roalf DR, Shinohara RT, Satterthwaite TD. Intrinsic activity development unfolds along a sensorimotor-association cortical axis in youth. Nat Neurosci. 2023 Apr;26(4):638-649. doi: 10.1038/s41593-023-01282-y. Epub 2023 Mar 27. PMID: 36973514. https://doi.org/10.1038/s41593-023-01282-y
- Weaver JK, Milford K, Rickard M, Logan J, Erdman L, Viteri B, D'Souza N, Cucchiara A, Skreta M, Keefe D, Shah S, Selman A, Fischer K, Weiss DA, Long CJ, Lorenzo A, Fan Y, Tasian GE. Deep learning imaging features derived from kidney ultrasounds predict chronic kidney disease progression in children with posterior urethral valves. Pediatr Nephrol. 2023 Mar;38(3):839-846. doi: 10.1007/s00467-022-05677-0. Epub 2022 Jul 22. PMID: 35867160; PMCID: PMC10068959. https://doi.org/10.1007/s00467-022-05677-0
- Fu CHY, Erus G, Fan Y, Antoniades M, Arnone D, Arnott SR, Chen T, Choi KS, Fatt CC, Frey BN, Frokjaer VG, Ganz M, Garcia J, Godlewska BR, Hassel S, Ho K, McIntosh AM, Qin K, Rotzinger S, Sacchet MD, Savitz J, Shou H, Singh A, Stolicyn A, Strigo I, Strother SC, Tosun D, Victor TA, Wei D, Wise T, Woodham RD, Zahn R, Anderson IM, Deakin JFW, Dunlop BW, Elliott R, Gong Q, Gotlib IH, Harmer CJ, Kennedy SH, Knudsen GM, Mayberg HS, Paulus MP, Qiu J, Trivedi MH, Whalley HC, Yan CG, Young AH, Davatzikos C. AI-based dimensional neuroimaging system for characterizing heterogeneity in brain structure and function in major depressive disorder: COORDINATE-MDD consortium design and rationale. BMC Psychiatry. 2023 Jan 23;23(1):59. doi: 10.1186/s12888-022-04509-7. PMID: 36690972; PMCID: PMC9869598. https://doi.org/10.1186/s12888-022-04509-7
- Li H, Srinivasan D, Zhuo C, Cui Z, Gur RE, Gur RC, Oathes DJ, Davatzikos C, Satterthwaite TD, Fan Y. Computing personalized brain functional networks from fMRI using self-supervised deep learning. Med Image Anal. 2023 Apr;85:102756. doi: 10.1016/j.media.2023.102756. Epub 2023 Jan 21. PMID: 36706636; PMCID: PMC10103143. https://doi.org/10.1016/j.media.2023.102756
- Cui Z, Pines AR, Larsen B, Sydnor VJ, Li H, Adebimpe A, Alexander-Bloch AF, Bassett DS, Bertolero M, Calkins ME, Davatzikos C, Fair DA, Gur RC, Gur RE, Moore TM, Shanmugan S, Shinohara RT, Vogel JW, Xia CH, Fan Y, Satterthwaite TD. Linking Individual Differences in Personalized Functional Network Topography to Psychopathology in Youth. Biol Psychiatry. 2022 Dec 15;92(12):973-983. doi: 10.1016/j.biopsych.2022.05.014. Epub 2022 May 18. PMID: 35927072; PMCID: PMC10040299. https://doi.org/10.1016/j.biopsych.2022.05.014
- Li H, Deng ZD, Oathes D, Fan Y. Computation of transcranial magnetic stimulation electric fields using self-supervised deep learning. Neuroimage. 2022 Dec 1;264:119705. doi: 10.1016/j.neuroimage.2022.119705. Epub 2022 Oct 21. PMID: 36280099; PMCID: PMC9854270. https://doi.org/10.1016/j.neuroimage.2022.119705
- Babajide R, Lembrikova K, Ziemba J, Ding J, Li Y, Fermin AS, Fan Y, Tasian GE. Automated Machine Learning Segmentation and Measurement of Urinary Stones on CT Scan. Urology. 2022 Jul 28:S0090-4295(22)00626-4. Epub ahead of print. PMID: 35908740. doi: https://doi.org/10.1016/j.urology.2022.07.029
- Chand GB, Singhal P, Dwyer DB, Wen J, Erus G, Doshi J, Srinivasan D, Mamourian E, Varol E, Sotiras A, Hwang G, Dazzan P, Kahn RS, Schnack HG, Zanetti MV, Meisenzahl E, Busatto GF, Crespo-Facorro B, Pantelis C, Wood SJ, Zhuo C, Shinohara RT, Shou H, Fan Y, Koutsouleris N, Kaczkurkin AN, Moore TM, Verma A, Calkins ME, Gur RE, Gur RC, Ritchie MD, Satterthwaite TD, Wolf DH, Davatzikos C. Schizophrenia Imaging Signatures and Their Associations With Cognition, Psychopathology, and Genetics in the General Population. Am J Psychiatry. 2022 Sep;179(9):650-660. doi: 10.1176/appi.ajp.21070686. Epub 2022 Apr 12. PMID: 35410495; PMCID: PMC9444886. https://doi.org/10.1176/appi.ajp.21070686
- Shanmugan S, Seidlitz J, Cui Z, Adebimpe A, Bassett DS, Bertolero MA, Davatzikos C, Fair DA, Gur RE, Gur RC, Larsen B, Li H, Pines A, Raznahan A, Roalf DR, Shinohara RT, Vogel J, Wolf DH, Fan Y, Alexander-Bloch A, Satterthwaite TD. Sex differences in the functional topography of association networks in youth. Proc Natl Acad Sci USA. 2022 Aug 16;119(33):e2110416119. doi: 10.1073/pnas.2110416119. Epub 2022 Aug 8. PMID: 35939696. https://doi.org/10.1073/pnas.2110416119
- Romanello Joaquim M, Furth EE, Fan Y, Song HK, Pickup S, Cao J, Choi H, Gupta M, Cao Q, Shinohara R, McMenamin D, Clendenin C, Karasic TB, Duda J, Gee JC, O'Dwyer PJ, Rosen MA, Zhou R. DWI Metrics Differentiating Benign Intraductal Papillary Mucinous Neoplasms from Invasive Pancreatic Cancer: A Study in GEM Models. Cancers (Basel). 2022 Aug 20;14(16):4017. doi: 10.3390/cancers14164017. PMID: 36011011; PMCID: PMC9406679. https://doi.org/10.3390/cancers14164017
- Chen AA, Srinivasan D, Pomponio R, Fan Y, Nasrallah IM, Resnick SM, Beason-Held LL, Davatzikos C, Satterthwaite TD, Bassett DS, Shinohara RT, Shou H. Harmonizing functional connectivity reduces scanner effects in community detection. Neuroimage. 2022 Aug 1;256:119198. doi: 10.1016/j.neuroimage.2022.119198. Epub 2022 Apr 11. PMID: 35421567; PMCID: PMC9202339. https://doi.org/10.1016/j.neuroimage.2022.119198
- Hwang G, Abdulkadir A, Erus G, Habes M, Pomponio R, Shou H, Doshi J, Mamourian E, Rashid T, Bilgel M, Fan Y, Sotiras A, Srinivasan D, Morris JC, Albert MS, Bryan NR, Resnick SM, Nasrallah IM, Davatzikos C, Wolk DA; from the iSTAGING consortium; ADNI. Disentangling Alzheimer's disease neurodegeneration from typical brain ageing using machine learning. Brain Commun. 2022 May 7;4(3):fcac117. doi: 10.1093/braincomms/fcac117. PMID: 35611306; PMCID: PMC9123890. https://doi.org/10.1093/braincomms/fcac117
- Pines AR, Larsen B, Cui Z, Sydnor VJ, Bertolero MA, Adebimpe A, Alexander-Bloch AF, Davatzikos C, Fair DA, Gur RC, Gur RE, Li H, Milham MP, Moore TM, Murtha K, Parkes L, Thompson-Schill SL, Shanmugan S, Shinohara RT, Weinstein SM, Bassett DS, Fan Y, Satterthwaite TD. Dissociable multi-scale patterns of development in personalized brain networks. Nat Commun. 2022 May 12;13(1):2647. doi: 10.1038/s41467-022-30244-4. PMID: 35551181; PMCID: PMC9098559. https://doi.org/10.1038/s41467-022-30244-4
- Jiao Z, Li H, Xiao Y, Dorsey J, Simone CB, Feigenberg S, Kao G, Fan Y. Integration of Deep Learning Radiomics and Counts of Circulating Tumor Cells Improves Prediction of Outcomes of Early Stage NSCLC Patients Treated With Stereotactic Body Radiation Therapy. Int J Radiat Oncol Biol Phys. 2022 Mar 15;112(4):1045-1054. doi: 10.1016/j.ijrobp.2021.11.006. Epub 2021 Nov 11. PMID: 34775000; PMCID: PMC9074888. https://doi.org/10.1016/j.ijrobp.2021.11.006
- Bashyam VM, Doshi J, Erus G, Srinivasan D, Abdulkadir A, Singh A, Habes M, Fan Y, Masters CL, Maruff P, Zhuo C, Völzke H, Johnson SC, Fripp J, Koutsouleris N, Satterthwaite TD, Wolf DH, Gur RE, Gur RC, Morris JC, Albert MS, Grabe HJ, Resnick SM, Bryan NR, Wittfeld K, Bülow R, Wolk DA, Shou H, Nasrallah IM, Davatzikos C; iSTAGING and PHENOM consortia. Deep Generative Medical Image Harmonization for Improving Cross-Site Generalization in Deep Learning Predictors. J Magn Reson Imaging. 2022 Mar;55(3):908-916. doi: 10.1002/jmri.27908. Epub 2021 Sep 25. PMID: 34564904; PMCID: PMC8844038. https://doi.org/10.1002/jmri.27908
- Li H, Fan Y. MDReg-Net: Multi-resolution diffeomorphic image registration using fully convolutional networks with deep self-supervision. Hum Brain Mapp. 2022 May;43(7):2218-2231. doi: 10.1002/hbm.25782. Epub 2022 Jan 24. PMID: 35072327; PMCID: PMC8996355. https://doi.org/10.1002/hbm.25782
- Kim CK, Choi JW, Jiao Z, Wang D, Wu J, Yi TY, Halsey KC, Eweje F, Tran TML, Liu C, Wang R, Sollee J, Hsieh C, Chang K, Yang FX, Singh R, Ou JL, Huang RY, Feng C, Feldman MD, Liu T, Gong JS, Lu S, Eickhoff C, Feng X, Kamel I, Sebro R, Atalay MK, Healey T, Fan Y, Liao WH, Wang J, Bai HX. An automated COVID-19 triage pipeline using artificial intelligence based on chest radiographs and clinical data. NPJ Digit Med. 2022 Jan 14;5(1):5. doi: 10.1038/s41746-021-00546-w. PMID: 35031687; PMCID: PMC8760275. https://doi.org/10.1038/s41746-021-00546-w
- Wen J, Fu CHY, Tosun D, Veturi Y, Yang Z, Abdulkadir A, Mamourian E, Srinivasan D, Skampardoni I, Singh A, Nawani H, Bao J, Erus G, Shou H, Habes M, Doshi J, Varol E, Mackin RS, Sotiras A, Fan Y, Saykin AJ, Sheline YI, Shen L, Ritchie MD, Wolk DA, Albert M, Resnick SM, Davatzikos C; iSTAGING consortium, ADNI, BIOCARD, and BLSA. Characterizing Heterogeneity in Neuroimaging, Cognition, Clinical Symptoms, and Genetics Among Patients With Late-Life Depression. JAMA Psychiatry. 2022 May 1;79(5):464-474. doi: 10.1001/jamapsychiatry.2022.0020. PMID: 35262657; PMCID: PMC8908227. https://doi.org/10.1001/jamapsychiatry.2022.0020
- Wen J, Varol E, Sotiras A, Yang Z, Chand GB, Erus G, Shou H, Abdulkadir A, Hwang G, Dwyer DB, Pigoni A, Dazzan P, Kahn RS, Schnack HG, Zanetti MV, Meisenzahl E, Busatto GF, Crespo-Facorro B, Rafael RG, Pantelis C, Wood SJ, Zhuo C, Shinohara RT, Fan Y, Gur RC, Gur RE, Satterthwaite TD, Koutsouleris N, Wolf DH, Davatzikos C; Alzheimer's Disease Neuroimaging Initiative. Multi-scale semi-supervised clustering of brain images: Deriving disease subtypes. Med Image Anal. 2022 Jan;75:102304. doi: 10.1016/j.media.2021.102304. Epub 2021 Nov 11. PMID: 34818611; PMCID: PMC8678373. https://doi.org/10.1016/j.media.2021.102304
- Wang R, Jiao Z, Yang L, Choi JW, Xiong Z, Halsey K, Tran TML, Pan I, Collins SA, Feng X, Wu J, Chang K, Shi LB, Yang S, Yu QZ, Liu J, Fu FX, Jiang XL, Wang DC, Zhu LP, Yi XP, Healey TT, Zeng QH, Liu T, Hu PF, Huang RY, Li YH, Sebro RA, Zhang PJL, Wang J, Atalay MK, Liao WH, Fan Y, Bai HX. Artificial intelligence for prediction of COVID-19 progression using CT imaging and clinical data. Eur Radiol. 2022 Jan;32(1):205-212. doi: 10.1007/s00330-021-08049-8. Epub 2021 Jul 5. PMID: 34223954; PMCID: PMC8256200. https://doi.org/10.1007/s00330-021-08049-8
- Zhu X, Li H, Shen HT, Zhang Z, Ji Y, Fan Y. Fusing functional connectivity with network nodal information for sparse network pattern learning of functional brain networks, Information Fusion, Volume 75, 2021, Pages 131-139, https://doi.org/10.1016/j.inffus.2021.03.006
- Du T, Zhang H, Li Y, Pickup S, Rosen M, Zhou R, Song HK, Fan Y. Adaptive convolutional neural networks for accelerating magnetic resonance imaging via k-space data interpolation. Med Image Anal. 2021 Aug;72:102098. doi: 10.1016/j.media.2021.102098. Epub 2021 May 16. PMID: 34091426; PMCID: PMC8734583. https://doi.org/10.1016/j.media.2021.102098
- Lee SH, Kao GD, Feigenberg SJ, Dorsey JF, Frick MA, Jean-Baptiste S, Uche CZ, Cengel KA, Levin WP, Berman AT, Aggarwal C, Fan Y, Xiao Y. Multiblock Discriminant Analysis of Integrative 18F-FDG-PET/CT Radiomics for Predicting Circulating Tumor Cells in Early-Stage Non-small Cell Lung Cancer Treated With Stereotactic Body Radiation Therapy. Int J Radiat Oncol Biol Phys. 2021 Aug 1;110(5):1451-1465. doi: 10.1016/j.ijrobp.2021.02.030. Epub 2021 Mar 1. PMID: 33662459; PMCID: PMC8286285. https://doi.org/10.1016/j.ijrobp.2021.02.030
- Purkayastha S, Xiao Y, Jiao Z, Thepumnoeysuk R, Halsey K, Wu J, Tran TML, Hsieh B, Choi JW, Wang D, Vallières M, Wang R, Collins S, Feng X, Feldman M, Zhang PJ, Atalay M, Sebro R, Yang L, Fan Y, Liao WH, Bai HX. Machine Learning-Based Prediction of COVID-19 Severity and Progression to Critical Illness Using CT Imaging and Clinical Data. Korean J Radiol. 2021 Jul;22(7):1213-1224. doi: 10.3348/kjr.2020.1104. Epub 2021 Mar 9. PMID: 33739635; PMCID: PMC8236359. https://doi.org/10.3348/kjr.2020.1104
- Oathes DJ, Balderston NL, Kording KP, DeLuisi JA, Perez GM, Medaglia JD, Fan Y, Duprat RJ, Satterthwaite TD, Sheline YI, Linn KA. Combining transcranial magnetic stimulation with functional magnetic resonance imaging for probing and modulating neural circuits relevant to affective disorders. Wiley Interdiscip Rev Cogn Sci. 2021 Jul;12(4):e1553. doi: 10.1002/wcs.1553. Epub 2021 Jan 19. PMID: 33470055; PMCID: PMC8521438. https://doi.org/10.1002/wcs.1553
- Li J, Fan Y, Hou B, Huang X, Lei D, Wang J, Mao C, Dong L, Liu C, Feng F, Xu Q, Cui L, Gao J. A longitudinal observation of brain structure between AD and FTLD. Clin Neurol Neurosurg. 2021 Mar 24;205:106604. doi: 10.1016/j.clineuro.2021.106604. Epub ahead of print. PMID: 33887505. https://doi.org/10.1016/j.clineuro.2021.106604
- Li Y, Li H, Fan Y. ACEnet: Anatomical context-encoding network for neuroanatomy segmentation. Med Image Anal. 2021 May;70:101991. doi: 10.1016/j.media.2021.101991. Epub 2021 Feb 7. PMID: 33607514; PMCID: PMC8044013. https://10.1016/j.media.2021.101991
- Jiao Z, Choi JW, Halsey K, Tran TML, Hsieh B, Wang D, Eweje F, Wang R, Chang K, Wu J, Collins SA, Yi TY, Delworth AT, Liu T, Healey TT, Lu S, Wang J, Feng X, Atalay MK, Yang L, Feldman M, Zhang PJL, Liao WH, Fan Y, Bai HX. Prognostication of patients with COVID-19 using artificial intelligence based on chest x-rays and clinical data: a retrospective study. Lancet Digit Health. 2021 May;3(5):e286-e294. doi: 10.1016/S2589-7500(21)00039-X. Epub 2021 Mar 24. Erratum in: Lancet Digit Health. 2021 May;3(5):e283. PMID: 33773969; PMCID: PMC7990487. https://doi.org/10.1016/S2589-7500(21)00039-X
- Demissei BG, Fan Y, Qian Y, Cheng HG, Smith AM, Shimamoto K, Vedage N, Narayan HK, Scherrer-Crosbie M, Davatzikos C, Ky B. Left ventricular segmental strain and the prediction of cancer therapy-related cardiac dysfunction. Eur Heart J Cardiovasc Imaging. 2021 Mar 22;22(4):418-426. doi: 10.1093/ehjci/jeaa288. PMID: 33206976; PMCID: PMC7984733. https://doi.org/10.1093/ehjci/jeaa288
- Jiao Z, Li H, Xiao Y, Aggarwal C, Galperin-Aizenberg M, Pryma D, Simone CB 2nd, Feigenberg SJ, Kao GD, Fan Y. Integration of Risk Survival Measures Estimated From Pre- and Posttreatment Computed Tomography Scans Improves Stratification of Patients With Early-Stage Non-small Cell Lung Cancer Treated With Stereotactic Body Radiation Therapy. Int J Radiat Oncol Biol Phys. 2021 Apr 1;109(5):1647-1656. doi: 10.1016/j.ijrobp.2020.12.014. Epub 2021 Jan 19. PMID: 33333202; PMCID: PMC7965338. https://doi.org/10.1016/j.ijrobp.2020.12.014
- Lin X, Li W, Dong G, Wang Q, Sun H, Shi J, Fan Y, Li P, Lu L. Characteristics of Multimodal Brain Connectomics in Patients With Schizophrenia and the Unaffected First-Degree Relatives. Front Cell Dev Biol. 2021 Feb 25;9:631864. doi: 10.3389/fcell.2021.631864. PMID: 33718367; PMCID: PMC7947240. https://doi.org/10.3389/fcell.2021.631864
- Shah C, Srinivasan D, Erus G, Schmitt JE, Agarwal A, Cho ME, Lerner AJ, Haley WE, Kurella Tamura M, Davatzikos C, Bryan RN, Fan Y, Nasrallah IM. Changes in brain functional connectivity and cognition related to white matter lesion burden in hypertensive patients from SPRINT. Neuroradiology. 2021 Jun;63(6):913-924. doi: 10.1007/s00234-020-02614-6. Epub 2021 Jan 6. PMID: 33404789; PMCID: PMC8286444. https://doi.org/10.1007/s00234-020-02614-6
- Lin X, Deng J, Dong G, Li S, Wu P, Sun H, Liu L, Shi J, Fan Y, Lu L, Li P. Effects of Chronic Pharmacological Treatment on Functional Brain Network Connectivity in Patients with Schizophrenia. Psychiatry Res. 2021 Jan;295:113338. doi: 10.1016/j.psychres.2020.113338. Epub 2020 Aug 5. PMID: 32768152. https://doi.org/10.1016/j.psychres.2020.113338
- Jing R, Han Y, Cheng H, Han Y, Wang K, Weintraub D, Fan Y. Altered large-scale functional brain networks in neurological Wilson's disease. Brain Imaging Behav. 2020 Oct;14(5):1445-1455. doi: 10.1007/s11682-019-00066-y. PMID: 31011947; PMCID: PMC6810801. https://doi.org/10.1007/s11682-019-00066-y
- Habes M, Pomponio R, Shou H, Doshi J, Mamourian E, Erus G, Nasrallah I, Launer LJ, Rashid T, Bilgel M, Fan Y, Toledo JB, Yaffe K, Sotiras A, Srinivasan D, Espeland M, Masters C, Maruff P, Fripp J, Völzk H, Johnson SC, Morris JC, Albert MS, Miller MI, Bryan RN, Grabe HJ, Resnick SM, Wolk DA, Davatzikos C; iSTAGING consortium, the Preclinical AD consortium, the ADNI, and the CARDIA studies. The Brain Chart of Aging: Machine-learning analytics reveals links between brain aging, white matter disease, amyloid burden, and cognition in the iSTAGING consortium of 10,216 harmonized MR scans. Alzheimers Dement. 2021 Jan;17(1):89-102. doi: 10.1002/alz.12178. Epub 2020 Sep 13. PMID: 32920988; PMCID: PMC7923395. https://doi.org/10.1002/alz.12178
- Yin S, Peng Q, Li H, Zhang Z, You X, Fischer K, Furth SL, Fan Y, Tasian GE. Multi-instance Deep Learning of Ultrasound Imaging Data for Pattern Classification of Congenital Abnormalities of the Kidney and Urinary Tract in Children. Urology. 2020 Aug;142:183-189. doi: 10.1016/j.urology.2020.05.019. Epub 2020 May 20. PMID: 32445770; PMCID: PMC7387180. https://doi.org/10.1016/j.urology.2020.05.019
- Zhao K, Ding Y, Han Y, Fan Y, Alexander-Bloch AF, Han T, Jin D, Liu B, Lu J, Song C, Wang P, Wang D, Wang Q, Xu K, Yang H, Yao H, Zheng Y, Yu C, Zhou B, Zhang X, Zhou Y, Jiang T, Zhang X, Liu Y; Alzheimer's Disease Neuroimaging Initiative; Multi-Center Alzheimer Disease Imaging Consortium. Independent and reproducible hippocampal radiomic biomarkers for multisite Alzheimer's disease: diagnosis, longitudinal progress and biological basis. Sci Bull (Beijing). 2020 Jul 15;65(13):1103-1113. doi: 10.1016/j.scib.2020.04.003. Epub 2020 Apr 3. PMID: 36659162. https://doi.org/10.1016/j.scib.2020.04.003
- Zheng Q, Itkin M, Fan Y. Quantification of Thoracic Lymphatic Flow Patterns Using Dynamic Contrast-enhanced MR Lymphangiography. Radiology. 2020 Jul;296(1):202-207. doi: 10.1148/radiol.2020192337. Epub 2020 May 5. PMID: 32368962; PMCID: PMC8286445. https://doi.org/10.1148/radiol.2020192337
- Bashyam VM, Erus G, Doshi J, Habes M, Nasrallah I, Truelove-Hill M, Srinivasan D, Mamourian L, Pomponio R, Fan Y, Launer LJ, Masters CL, Maruff P, Zhuo C, Völzke H, Johnson SC, Fripp J, Koutsouleris N, Satterthwaite TD, Wolf D, Gur RE, Gur RC, Morris J, Albert MS, Grabe HJ, Resnick S, Bryan RN, Wolk DA, Shou H, Davatzikos C. MRI signatures of brain age and disease over the lifespan based on a deep brain network and 14 468 individuals worldwide. Brain. 2020 Jul 1;143(7):2312-2324. doi: 10.1093/brain/awaa160. Erratum in: Brain. 2021 Feb 12;144(1):e12. PMID: 32591831; PMCID: PMC7364766. https://doi.org/10.1093/brain/awaa160
- Peng Q, Ouyang M, Wang J, Yu Q, Zhao C, Slinger M, Li H, Fan Y, Hong B, Huang H. Regularized-Ncut: Robust and homogeneous functional parcellation of neonate and adult brain networks. Artif Intell Med. 2020 Jun;106:101872. doi: 10.1016/j.artmed.2020.101872. Epub 2020 May 12. PMID: 32593397; PMCID: PMC7410361. https://doi.org/10.1016/j.artmed.2020.101872
- Li P, Jing RX, Zhao RJ, Shi L, Sun HQ, Ding Z, Lin X, Lu L, Fan Y. Association between functional and structural connectivity of the corticostriatal network in people with schizophrenia and unaffected first-degree relatives. J Psychiatry Neurosci. 2020 Nov 1;45(6):395-405. doi: 10.1503/jpn.190015. PMID: 32436671; PMCID: PMC7595738. https://doi.org/10.1503/jpn.190015
- Cui Z, Li H, Xia CH, Larsen B, Adebimpe A, Baum GL, Cieslak M, Gur RE, Gur RC, Moore TM, Oathes DJ, Alexander-Bloch AF, Raznahan A, Roalf DR, Shinohara RT, Wolf DH, Davatzikos C, Bassett DS, Fair DA, Fan Y, Satterthwaite TD. Individual Variation in Functional Topography of Association Networks in Youth. Neuron. 2020 Apr 22;106(2):340-353.e8. doi: 10.1016/j.neuron.2020.01.029. Epub 2020 Feb 19. PMID: 32078800; PMCID: PMC7182484. https://doi.org/10.1016/j.neuron.2020.01.029
- Xi IL, Zhao Y, Wang R, Chang M, Purkayastha S, Chang K, Huang RY, Silva AC, Vallières M, Habibollahi P, Fan Y, Zou B, Gade TP, Zhang PJ, Soulen MC, Zhang Z, Bai HX, Stavropoulos SW. Deep Learning to Distinguish Benign from Malignant Renal Lesions Based on Routine MR Imaging. Clin Cancer Res. 2020 Apr 15;26(8):1944-1952. doi: 10.1158/1078-0432.CCR-19-0374. Epub 2020 Jan 14. PMID: 31937619. https://doi.org/10.1158/1078-0432.CCR-19-0374
- Chand GB, Dwyer DB, Erus G, Sotiras A, Varol E, Srinivasan D, Doshi J, Pomponio R, Pigoni A, Dazzan P, Kahn RS, Schnack HG, Zanetti MV, Meisenzahl E, Busatto GF, Crespo-Facorro B, Pantelis C, Wood SJ, Zhuo C, Shinohara RT, Shou H, Fan Y, Gur RC, Gur RE, Satterthwaite TD, Koutsouleris N, Wolf DH, Davatzikos C. Two distinct neuroanatomical subtypes of schizophrenia revealed using machine learning. Brain. 2020 Mar 1;143(3):1027-1038. doi: 10.1093/brain/awaa025. PMID: 32103250; PMCID: PMC7089665. https://doi.org/10.1093/brain/awaa025
- Cheng H, Gao L, Hou B, Feng F, Guo X, Wang Z, Feng M, Xing B, Fan Y. Reversibility of cerebral blood flow in patients with Cushing's disease after surgery treatment. Metabolism. 2020 Mar;104:154050. doi: 10.1016/j.metabol.2019.154050. PMID: 31863780; PMCID: PMC6938712. https://doi.org/10.1016/j.metabol.2019.154050
- Pomponio R, Erus G, Habes M, Doshi J, Srinivasan D, Mamourian E, Bashyam V, Nasrallah IM, Satterthwaite TD, Fan Y, Launer LJ, Masters CL, Maruff P, Zhuo C, Völzke H, Johnson SC, Fripp J, Koutsouleris N, Wolf DH, Gur R, Gur R, Morris J, Albert MS, Grabe HJ, Resnick SM, Bryan RN, Wolk DA, Shinohara RT, Shou H, Davatzikos C. Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan. Neuroimage. 2020 Mar;208:116450. doi: 10.1016/j.neuroimage.2019.116450. PMID: 31821869; PMCID: PMC6980790. https://doi.org/10.1016/j.neuroimage.2019.116450
- Kaczkurkin AN, Sotiras A, Baller EB, Barzilay R, Calkins ME, Chand GB, Cui Z, Erus G, Fan Y, Gur RE, Gur RC, Moore TM, Roalf DR, Rosen AFG, Ruparel K, Shinohara RT, Varol E, Wolf DH, Davatzikos C, Satterthwaite TD. Neurostructural Heterogeneity in Youths With Internalizing Symptoms. Biol Psychiatry. 2020 Mar 1;87(5):473-482. doi: 10.1016/j.biopsych.2019.09.005. PMID: 31690494; PMCID: PMC7007843. https://doi.org/10.1016/j.biopsych.2019.09.005
- Truelove-Hill M, Erus G, Bashyam V, Varol E, Sako C, Gur RC, Gur RE, Koutsouleris N, Zhuo C, Fan Y, Wolf DH, Satterthwaite TD, Davatzikos C. A Multidimensional Neural Maturation Index Reveals Reproducible Developmental Patterns in Children and Adolescents. J Neurosci. 2020 Feb 5;40(6):1265-1275. doi: 10.1523/JNEUROSCI.2092-19.2019. PMID: 31896669; PMCID: PMC7002145. https://doi.org/10.1523/jneurosci.2092-19.2019
- Yin S, Peng Q, Li H, Zhang Z, You X, Fischer K, Furth SL, Tasian GE, Fan Y. Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks. Med Image Anal. 2020 Feb;60:101602. doi: 10.1016/j.media.2019.101602. PMID: 31760193; PMCID: PMC6980346. https://doi.org/10.1016/j.media.2019.101602
- Fu CHY, Fan Y, Davatzikos C. Widespread Morphometric Abnormalities in Major Depression: Neuroplasticity and Potential for Biomarker Development. Neuroimaging Clin N Am. 2020 Feb;30(1):85-95. doi: 10.1016/j.nic.2019.09.008. PMID: 31759575; PMCID: PMC7106506. https://doi.org/10.1016/j.nic.2019.09.008
- Liu H, Li H, Habes M, Li Y, Boimel P, Janopaul-Naylor J, Xiao Y, Ben-Josef E, Fan Y. Robust Collaborative Clustering of Subjects and Radiomic Features for Cancer Prognosis. IEEE Trans Biomed Eng. 2020 Oct;67(10):2735-2744. doi: 10.1109/TBME.2020.2969839. PMID: 31995474; PMCID: PMC8048106. https://doi.org/10.1109/TBME.2020.2969839
- Jung J, Ji SJ, Zhu H, Ibrahim JG, Fan Y, Lee E. Penalized Logistic Regression using Functional Connectivity as Covariates with an Application to Mild Cognitive Impairment, Communications for Statistical Applications and Methods, 27: 603-624, Nov 2020, https://doi.org/10.29220/CSAM.2020.27.6.603
- Martin-Carreras T, Li H, Cooper K, Fan Y, Sebro R. Radiomic features from MRI distinguish myxomas from myxofibrosarcomas. BMC Med Imaging. 2019 Aug 15;19(1):67. doi: 10.1186/s12880-019-0366-9. PMID: 31416421; PMCID: PMC6694512. https://doi.org/10.1186/s12880-019-0366-9
- Davatzikos C, Sotiras A, Fan Y, Habes M, Erus G, Rathore S, Bakas S, Chitalia R, Gastounioti A, Kontos D. Precision diagnostics based on machine learning-derived imaging signatures. Magn Reson Imaging. 2019 Dec;64:49-61. doi: 10.1016/j.mri.2019.04.012. Epub 2019 May 6. PMID: 31071473; PMCID: PMC6832825. https://doi.org/10.1016/j.mri.2019.04.012
- Li H, Fan Y. Interpretable, highly accurate brain decoding of subtly distinct brain states from functional MRI using intrinsic functional networks and long short-term memory recurrent neural networks. Neuroimage. 2019 Nov 15;202:116059. doi: 10.1016/j.neuroimage.2019.116059. Epub 2019 Jul 27. PMID: 31362049; PMCID: PMC6819260. https://doi.org/10.1016/j.neuroimage.2019.116059
- Zhu H, Tang Z, Cheng H, Wu Y, Fan Y. Multi-atlas label fusion with random local binary pattern features: Application to hippocampus segmentation. Sci Rep. 2019 Nov 14;9(1):16839. doi: 10.1038/s41598-019-53387-9. PMID: 31727982; PMCID: PMC6856174. https://doi.org/10.1038/s41598-019-53387-9
- Smith AL, Weissbart SJ, Hartigan SM, Bilello M, Newman DK, Wein AJ, Malykhina AP, Erus G, Fan Y. Association between urinary symptom severity and white matter plaque distribution in women with multiple sclerosis. Neurourol Urodyn. 2020 Jan;39(1):339-346. doi: 10.1002/nau.24206. Epub 2019 Nov 6. PMID: 31691357; PMCID: PMC8054557. https://doi.org/10.1002/nau.24206
- Men K, Geng H, Zhong H, Fan Y, Lin A, Xiao Y. A Deep Learning Model for Predicting Xerostomia Due to Radiation Therapy for Head and Neck Squamous Cell Carcinoma in the RTOG 0522 Clinical Trial. Int J Radiat Oncol Biol Phys. 2019 Oct 1;105(2):440-447. doi: 10.1016/j.ijrobp.2019.06.009. Epub 2019 Jun 13. PMID: 31201897; PMCID: PMC6732004. https://doi.org/10.1016/j.ijrobp.2019.06.009
- Fu CHY, Fan Y, Davatzikos C. Addressing heterogeneity (and homogeneity) in treatment mechanisms in depression and the potential to develop diagnostic and predictive biomarkers. Neuroimage Clin. 2019;24:101997. doi: 10.1016/j.nicl.2019.101997. Epub 2019 Aug 28. PMID: 31525565; PMCID: PMC6807387. https://doi.org/10.1016/j.nicl.2019.101997
- Wetherill RR, Rao H, Hager N, Wang J, Franklin TR, Fan Y. Classifying and characterizing nicotine use disorder with high accuracy using machine learning and resting-state fMRI. Addict Biol. 2019 Jul;24(4):811-821. doi: 10.1111/adb.12644. Epub 2018 Jun 27. PMID: 29949234; PMCID: PMC6310107. https://doi.org/10.1111/adb.12644
- Li H, Habes M, Wolk DA, Fan Y; Alzheimer's Disease Neuroimaging Initiative and the Australian Imaging Biomarkers and Lifestyle Study of Aging. A deep learning model for early prediction of Alzheimer's disease dementia based on hippocampal magnetic resonance imaging data. Alzheimers Dement. 2019 Aug;15(8):1059-1070. doi: 10.1016/j.jalz.2019.02.007. Epub 2019 Jun 11. PMID: 31201098; PMCID: PMC6719787. https://doi.org/10.1016/j.jalz.2019.02.007
- Nie K, Al-Hallaq H, Li XA, Benedict SH, Sohn JW, Moran JM, Fan Y, Huang M, Knopp MV, Michalski JM, Monroe J, Obcemea C, Tsien CI, Solberg T, Wu J, Xia P, Xiao Y, El Naqa I. NCTN Assessment on Current Applications of Radiomics in Oncology. Int J Radiat Oncol Biol Phys. 2019 Jun 1;104(2):302-315. doi: 10.1016/j.ijrobp.2019.01.087. Epub 2019 Jan 31. PMID: 30711529; PMCID: PMC6499656. https://doi.org/10.1016/j.ijrobp.2019.01.087
- Jing R, Li P, Ding Z, Lin X, Zhao R, Shi L, Yan H, Liao J, Zhuo C, Lu L, Fan Y. Machine learning identifies unaffected first-degree relatives with functional network patterns and cognitive impairment similar to those of schizophrenia patients. Hum Brain Mapp. 2019 Sep;40(13):3930-3939. doi: 10.1002/hbm.24678. Epub 2019 May 30. PMID: 31148311; PMCID: PMC6679781. https://doi.org/10.1002/hbm.24678
- Toledo JB, Habes M, Sotiras A, Bjerke M, Fan Y, Weiner MW, Shaw LM, Davatzikos C, Trojanowski JQ; Alzheimer’s Disease Neuroimaging Initiative. APOE Effect on Amyloid-β PET Spatial Distribution, Deposition Rate, and Cut-Points. J Alzheimers Dis. 2019;69(3):783-793. doi: 10.3233/JAD-181282. PMID: 31127775; PMCID: PMC8634544. https://doi.org/10.3233/JAD-181282
- Zheng Q, Furth SL, Tasian GE, Fan Y. Computer-aided diagnosis of congenital abnormalities of the kidney and urinary tract in children based on ultrasound imaging data by integrating texture image features and deep transfer learning image features. J Pediatr Urol. 2019 Feb;15(1):75.e1-75.e7. doi: 10.1016/j.jpurol.2018.10.020. Epub 2018 Oct 31. PMID: 30473474; PMCID: PMC6410741. https://doi.org/10.1016/j.jpurol.2018.10.020
- Men K, Geng H, Cheng C, Zhong H, Huang M, Fan Y, Plastaras JP, Lin A, Xiao Y. Technical Note: More accurate and efficient segmentation of organs-at-risk in radiotherapy with convolutional neural networks cascades. Med Phys. 2019 Jan;46(1):286-292. doi: 10.1002/mp.13296. Epub 2018 Dec 7. PMID: 30450825; PMCID: PMC6322972. https://doi.org/10.1002/mp.13296
- Men K, Boimel P, Janopaul-Naylor J, Cheng C, Zhong H, Huang M, Geng H, Fan Y, Plastaras JP, Ben-Josef E, Xiao Y. A study of positioning orientation effect on segmentation accuracy using convolutional neural networks for rectal cancer. J Appl Clin Med Phys. 2019 Jan;20(1):110-117. doi: 10.1002/acm2.12494. Epub 2018 Nov 12. PMID: 30418701; PMCID: PMC6333147. https://doi.org/10.1002/acm2.12494
- Li H, Galperin-Aizenberg M, Pryma D, Simone CB 2nd, Fan Y. Unsupervised machine learning of radiomic features for predicting treatment response and overall survival of early stage non-small cell lung cancer patients treated with stereotactic body radiation therapy. Radiother Oncol. 2018 Nov;129(2):218-226. doi: 10.1016/j.radonc.2018.06.025. Epub 2018 Jul 4. PMID: 30473058; PMCID: PMC6261331. https://doi.org/10.1016/j.radonc.2018.06.025
- Zheng Q, Wu Y, Fan Y. Integrating Semi-supervised and Supervised Learning Methods for Label Fusion in Multi-Atlas Based Image Segmentation. Front Neuroinform. 2018 Oct 10;12:69. doi: 10.3389/fninf.2018.00069. PMID: 30364123; PMCID: PMC6191508. https://doi.org/10.3389/fninf.2018.00069
- Zhu X, Zhang W, Fan Y; Alzheimer’s Disease Neuroimaging Initiative. A Robust Reduced Rank Graph Regression Method for Neuroimaging Genetic Analysis. Neuroinformatics. 2018 Oct;16(3-4):351-361. doi: 10.1007/s12021-018-9382-0. PMID: 29907892; PMCID: PMC6092232. https://doi.org/10.1007/s12021-018-9382-0
- Men K, Boimel P, Janopaul-Naylor J, Zhong H, Huang M, Geng H, Cheng C, Fan Y, Plastaras JP, Ben-Josef E, Xiao Y. Cascaded atrous convolution and spatial pyramid pooling for more accurate tumor target segmentation for rectal cancer radiotherapy. Phys Med Biol. 2018 Sep 17;63(18):185016. doi: 10.1088/1361-6560/aada6c. PMID: 30109986; PMCID: PMC6207191. https://doi.org/10.1088/1361-6560/aada6c
- Rozycki M, Satterthwaite TD, Koutsouleris N, Erus G, Doshi J, Wolf DH, Fan Y, Gur RE, Gur RC, Meisenzahl EM, Zhuo C, Yin H, Yan H, Yue W, Zhang D, Davatzikos C. Multisite Machine Learning Analysis Provides a Robust Structural Imaging Signature of Schizophrenia Detectable Across Diverse Patient Populations and Within Individuals. Schizophr Bull. 2018 Aug 20;44(5):1035-1044. doi: 10.1093/schbul/sbx137. PMID: 29186619; PMCID: PMC6101559. https://doi.org/10.1093/schbul/sbx137
- Sun Y, Zhang Y, Zhang D, Chang S, Jing R, Yue W, Lu L, Chen D, Sun Y, Fan Y, Shi J. GABRA2 rs279858-linked variants are associated with disrupted structural connectome of reward circuits in heroin abusers. Transl Psychiatry. 2018 Jul 30;8(1):138. doi: 10.1038/s41398-018-0180-0. PMID: 30061709; PMCID: PMC6066482. https://doi.org/10.1038/s41398-018-0180-0
- Li J, Zuo Z, Zhang X, Shao X, Lu J, Xue R, Fan Y, Guan Y, Zhang W. Excitatory Repetitive Transcranial Magnetic Stimulation Induces Contralesional Cortico-Cerebellar Pathways After Acute Ischemic Stroke: A Preliminary DTI Study. Front Behav Neurosci. 2018 Jul 27;12:160. doi: 10.3389/fnbeh.2018.00160. PMID: 30140207; PMCID: PMC6094967. https://doi.org/10.3389/fnbeh.2018.00160
- Zhang X, Cheng H, Zuo Z, Zhou K, Cong F, Wang B, Zhuo Y, Chen L, Xue R, Fan Y. Individualized Functional Parcellation of the Human Amygdala Using a Semi-supervised Clustering Method: A 7T Resting State fMRI Study. Front Neurosci. 2018 Apr 26;12:270. doi: 10.3389/fnins.2018.00270. PMID: 29755313; PMCID: PMC5932177. https://doi.org/10.3389/fnins.2018.00270
- Fu L, Liu L, Zhang J, Xu B, Fan Y, Tian J. Brain Network Alterations in Alzheimer's Disease Identified by Early-Phase PIB-PET. Contrast Media Mol Imaging. 2018 Jan 8;2018:6830105. doi: 10.1155/2018/6830105. PMID: 29531506; PMCID: PMC5817202. https://doi.org/10.1155/2018/6830105
- Ma Q, Zhang T, Zanetti MV, Shen H, Satterthwaite TD, Wolf DH, Gur RE, Fan Y, Hu D, Busatto GF, Davatzikos C. Classification of multi-site MR images in the presence of heterogeneity using multi-task learning. Neuroimage Clin. 2018 May 9;19:476-486. doi: 10.1016/j.nicl.2018.04.037. PMID: 29984156; PMCID: PMC6029565. https://doi.org/10.1016/j.nicl.2018.04.037
- Davatzikos C, Rathore S, Bakas S, Pati S, Bergman M, Kalarot R, Sridharan P, Gastounioti A, Jahani N, Cohen E, Akbari H, Tunc B, Doshi J, Parker D, Hsieh M, Sotiras A, Li H, Ou Y, Doot RK, Bilello M, Fan Y, Shinohara RT, Yushkevich P, Verma R, Kontos D. Cancer imaging phenomics toolkit: quantitative imaging analytics for precision diagnostics and predictive modeling of clinical outcome. J Med Imaging (Bellingham). 2018 Jan;5(1):011018. doi: 10.1117/1.JMI.5.1.011018. Epub 2018 Jan 11. PMID: 29340286; PMCID: PMC5764116. https://doi.org/10.1117/1.JMI.5.1.011018
- Zhao X, Wu Y, Song G, Li Z, Zhang Y, Fan Y. A deep learning model integrating FCNNs and CRFs for brain tumor segmentation. Med Image Anal. 2018 Jan;43:98-111. doi: 10.1016/j.media.2017.10.002. Epub 2017 Oct 5. PMID: 29040911; PMCID: PMC6029627. https://doi.org/10.1016/j.media.2017.10.002
- Peng H, Fan Y. Feature selection by optimizing a lower bound of conditional mutual information. Inf Sci (N Y). 2017 Dec;418-419:652-667. doi: 10.1016/j.ins.2017.08.036. Epub 2017 Aug 9. PMID: 30283157; PMCID: PMC6167022. https://doi.org/10.1016/j.ins.2017.08.036
- Li H, Satterthwaite TD, Fan Y. Large-scale sparse functional networks from resting state fMRI. Neuroimage. 2017 Aug 1;156:1-13. doi: 10.1016/j.neuroimage.2017.05.004. Epub 2017 May 5. PMID: 28483721; PMCID: PMC5568802. https://doi.org/10.1016/j.neuroimage.2017.05.004
- Zheng Q, Warner S, Tasian G, Fan Y. A Dynamic Graph Cuts Method with Integrated Multiple Feature Maps for Segmenting Kidneys in 2D Ultrasound Images. Acad Radiol. 2018 Sep;25(9):1136-1145. doi: 10.1016/j.acra.2018.01.004. Epub 2018 Feb 12. PMID: 29449144; PMCID: PMC6087676. https://doi.org/10.1016/j.acra.2018.01.004
- Tang Z, Wu Y, Fan Y. Groupwise registration of MR brain images with tumors. Phys Med Biol. 2017 Aug 4;62(17):6853-6868. doi: 10.1088/1361-6560/aa7c41. PMID: 28657551; PMCID: PMC5759775. https://doi.org/10.1088/1361-6560/aa7c41
- Li P, Jing RX, Zhao RJ, Ding ZB, Shi L, Sun HQ, Lin X, Fan TT, Dong WT, Fan Y, Lu L. Electroconvulsive therapy-induced brain functional connectivity predicts therapeutic efficacy in patients with schizophrenia: a multivariate pattern recognition study. NPJ Schizophr. 2017 May 11;3:21. doi: 10.1038/s41537-017-0023-7. Erratum in: NPJ Schizophr. 2017 Sep 20;3:33. PMID: 28560267; PMCID: PMC5441568. https://doi.org/10.1038/s41537-017-0023-7
- Sun Y, Liu L, Feng J, Yue W, Lu L, Fan Y, Shi J. MAOA rs1137070 and heroin addiction interactively alter gray matter volume of the salience network. Sci Rep. 2017 Mar 27;7:45321. doi: 10.1038/srep45321. PMID: 28345608; PMCID: PMC5366902. https://doi.org/10.1038/srep45321
- Li J, Zhang XW, Zuo ZT, Lu J, Meng CL, Fang HY, Xue R, Fan Y, Guan YZ, Zhang WH. Cerebral Functional Reorganization in Ischemic Stroke after Repetitive Transcranial Magnetic Stimulation: An fMRI Study. CNS Neurosci Ther. 2016 Dec;22(12):952-960. doi: 10.1111/cns.12593. Epub 2016 Jul 15. PMID: 27421949; PMCID: PMC6492855. https://doi.org/10.1111/cns.12593
- Zhu H, Cheng H, Yang X, Fan Y; Alzheimer’s Disease Neuroimaging Initiative. Metric Learning for Multi-atlas based Segmentation of Hippocampus. Neuroinformatics. 2017 Jan;15(1):41-50. doi: 10.1007/s12021-016-9312-y. PMID: 27638650; PMCID: PMC5438876. https://doi.org/10.1007/s12021-016-9312-y
- Han Y, Cheng H, Toledo JB, Wang X, Li B, Han Y, Wang K, Fan Y. Impaired functional default mode network in patients with mild neurological Wilson's disease. Parkinsonism Relat Disord. 2016 Sep;30:46-51. doi: 10.1016/j.parkreldis.2016.06.018. Epub 2016 Jun 23. PMID: 27372239. https://doi.org/10.1016/j.parkreldis.2016.06.018
- Tang Z, Fan Y. Groupwise Image Registration Guided by a Dynamic Digraph of Images. Neuroinformatics. 2016 Apr;14(2):131-45. doi: 10.1007/s12021-015-9285-2. PMID: 26585712. https://doi.org/10.1007/s12021-015-9285-2
- Zhang Y, Caspers S, Fan L, Fan Y, Song M, Liu C, Mo Y, Roski C, Eickhoff S, Amunts K, Jiang T. Robust brain parcellation using sparse representation on resting-state fMRI. Brain Struct Funct. 2015 Nov;220(6):3565-79. doi: 10.1007/s00429-014-0874-x. Epub 2014 Aug 26. PMID: 25156576; PMCID: PMC4575697. https://doi.org/10.1007/s00429-014-0874-x
- Liu L, Fu L, Zhang X, Zhang J, Zhang X, Xu B, Tian J, Fan Y. Combination of dynamic (11)C-PIB PET and structural MRI improves diagnosis of Alzheimer's disease. Psychiatry Res. 2015 Aug 30;233(2):131-40. doi: 10.1016/j.pscychresns.2015.05.014. Epub 2015 May 30. PMID: 26095348. https://doi.org/10.1016/j.pscychresns.2015.05.014
- Wang Y, Fan X, Li H, Lin Z, Bao H, Li S, Wang L, Jiang T, Fan Y, Jiang T. Tumor border sharpness correlates with HLA-G expression in low-grade gliomas. J Neuroimmunol. 2015 May 15;282:1-6. doi: 10.1016/j.jneuroim.2015.02.013. Epub 2015 Mar 3. PMID: 25903722. https://doi.org/10.1016/j.jneuroim.2015.02.013
- Kong D, Giovanello KS, Wang Y, Lin W, Lee E, Fan Y, Murali Doraiswamy P, Zhu H. Predicting Alzheimer's Disease Using Combined Imaging-Whole Genome SNP Data. J Alzheimers Dis. 2015;46(3):695-702. doi: 10.3233/JAD-150164. PMID: 25869783; PMCID: PMC4583331. https://doi.org/10.3233/JAD-150164
- Cheng H, Wu H, Fan Y. Optimizing affinity measures for parcellating brain structures based on resting state fMRI data: a validation on medial superior frontal cortex. J Neurosci Methods. 2014 Nov 30;237:90-102. doi: 10.1016/j.jneumeth.2014.09.004. Epub 2014 Sep 16. PMID: 25224735. https://doi.org/10.1016/j.jneumeth.2014.09.004
- Fu L, Liu L, Zhang J, Xu B, Fan Y, Tian J. Comparison of dual-biomarker PIB-PET and dual-tracer PET in AD diagnosis. Eur Radiol. 2014 Nov;24(11):2800-9. doi: 10.1007/s00330-014-3311-x. Epub 2014 Aug 6. PMID: 25097125. https://doi.org/10.1007/s00330-014-3311-x
- Hao Y, Wang T, Zhang X, Duan Y, Yu C, Jiang T, Fan Y; Alzheimer's Disease Neuroimaging Initiative. Local label learning (LLL) for subcortical structure segmentation: application to hippocampus segmentation. Hum Brain Mapp. 2014 Jun;35(6):2674-97. doi: 10.1002/hbm.22359. Epub 2013 Oct 23. PMID: 24151008; PMCID: PMC6869539. https://doi.org/10.1002/hbm.22359
- Lu H, Wu H, Cheng H, Wei D, Wang X, Fan Y, Zhang H, Zhang T. Improvement of white matter and functional connectivity abnormalities by repetitive transcranial magnetic stimulation in crossed aphasia in dextral. Int J Clin Exp Med. 2014 Oct 15;7(10):3659-68. PMID: 25419415; PMCID: PMC4238516. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4238516/
- Jiang D, Du Y, Cheng H, Jiang T, Fan Y. Groupwise spatial normalization of fMRI data based on multi-range functional connectivity patterns. Neuroimage. 2013 Nov 15;82:355-72. doi: 10.1016/j.neuroimage.2013.05.093. Epub 2013 May 28. PMID: 23727315. https://doi.org/10.1016/j.neuroimage.2013.05.093
- Du Y, Fan Y. Group information guided ICA for fMRI data analysis. Neuroimage. 2013 Apr 1;69:157-97. doi: 10.1016/j.neuroimage.2012.11.008. Epub 2012 Nov 27. PMID: 23194820. https://doi.org/10.1016/j.neuroimage.2012.11.008
- Fu L, Li H, Wang H, Xu B, Fan Y, Tian J. SUVmax/THKmax as a biomarker for distinguishing advanced gastric carcinoma from primary gastric lymphoma. PLoS One. 2012;7(12):e50914. doi: 10.1371/journal.pone.0050914. Epub 2012 Dec 4. PMID: 23226547; PMCID: PMC3514221. https://doi.org/10.1371/journal.pone.0050914
- Yap PT, Fan Y, Chen Y, Gilmore JH, Lin W, Shen D. Development trends of white matter connectivity in the first years of life. PLoS One. 2011;6(9):e24678. doi: 10.1371/journal.pone.0024678. Epub 2011 Sep 23. PMID: 21966364; PMCID: PMC3179462. https://doi.org/10.1371/journal.pone.0024678
- Fan Y, Liu Y, Wu H, Hao Y, Liu H, Liu Z, Jiang T. Discriminant analysis of functional connectivity patterns on Grassmann manifold. Neuroimage. 2011 Jun 15;56(4):2058-67. doi: 10.1016/j.neuroimage.2011.03.051. Epub 2011 Apr 2. PMID: 21440643. https://doi.org/10.1016/j.neuroimage.2010.07.025
- Skup M, Zhu H, Wang Y, Giovanello KS, Lin JA, Shen D, Shi F, Gao W, Lin W, Fan Y, Zhang H; Alzheimer's Disease Neuroimaging Initiative. Sex differences in grey matter atrophy patterns among AD and aMCI patients: results from ADNI. Neuroimage. 2011 Jun 1;56(3):890-906. doi: 10.1016/j.neuroimage.2011.02.060. Epub 2011 Feb 26. PMID: 21356315; PMCID: PMC3085726. https://doi.org/10.1016/j.neuroimage.2011.02.060
- Shi F, Shen D, Yap PT, Fan Y, Cheng JZ, An H, Wald LL, Gerig G, Gilmore JH, Lin W. CENTS: cortical enhanced neonatal tissue segmentation. Hum Brain Mapp. 2011 Mar;32(3):382-96. doi: 10.1002/hbm.21023. PMID: 20690143; PMCID: PMC2976792. https://doi.org/10.1002/hbm.21023
- Fan Y, Shi F, Smith JK, Lin W, Gilmore JH, Shen D. Brain anatomical networks in early human brain development. Neuroimage. 2011 Feb 1;54(3):1862-71. doi: 10.1016/j.neuroimage.2010.07.025. Epub 2010 Jul 30. PMID: 20650319; PMCID: PMC3023885. https://doi.org/10.1016/j.neuroimage.2011.03.051
- Shi F, Yap PT, Fan Y, Gilmore JH, Lin W, Shen D. Construction of multi-region-multi-reference atlases for neonatal brain MRI segmentation. Neuroimage. 2010 Jun;51(2):684-93. doi: 10.1016/j.neuroimage.2010.02.025. Epub 2010 Feb 17. PMID: 20171290; PMCID: PMC2856707. https://doi.org/10.1016/j.neuroimage.2010.02.025
- Wang Y, Fan Y, Bhatt P, Davatzikos C. High-dimensional pattern regression using machine learning: from medical images to continuous clinical variables. Neuroimage. 2010 May 1;50(4):1519-35. doi: 10.1016/j.neuroimage.2009.12.092. Epub 2010 Jan 4. PMID: 20056158; PMCID: PMC2839056. https://doi.org/10.1016/j.neuroimage.2009.12.092
- Shi F, Fan Y, Tang S, Gilmore JH, Lin W, Shen D. Neonatal brain image segmentation in longitudinal MRI studies. Neuroimage. 2010 Jan 1;49(1):391-400. doi: 10.1016/j.neuroimage.2009.07.066. Epub 2009 Aug 4. PMID: 19660558; PMCID: PMC2764995. https://doi.org/10.1016/j.neuroimage.2009.07.066
- Tang S, Fan Y, Wu G, Kim M, Shen D. RABBIT: rapid alignment of brains by building intermediate templates. Neuroimage. 2009 Oct 1;47(4):1277-87. doi: 10.1016/j.neuroimage.2009.02.043. Epub 2009 Mar 10. PMID: 19285145; PMCID: PMC5002990. https://doi.org/10.1016/j.neuroimage.2009.02.043
- Davatzikos C, Xu F, An Y, Fan Y, Resnick SM. Longitudinal progression of Alzheimer's-like patterns of atrophy in normal older adults: the SPARE-AD index. Brain. 2009 Aug;132(Pt 8):2026-35. doi: 10.1093/brain/awp091. Epub 2009 May 4. PMID: 19416949; PMCID: PMC2714059. https://doi.org/10.1093/brain/awp091
- Zheng Y, Englander S, Baloch S, Zacharaki EI, Fan Y, Schnall MD, Shen D. STEP: spatiotemporal enhancement pattern for MR-based breast tumor diagnosis. Med Phys. 2009 Jul;36(7):3192-204. doi: 10.1118/1.3151811. PMID: 19673218; PMCID: PMC2852449. https://doi.org/10.1118/1.3151811
- Misra C, Fan Y, Davatzikos C. Baseline and longitudinal patterns of brain atrophy in MCI patients, and their use in prediction of short-term conversion to AD: results from ADNI. Neuroimage. 2009 Feb 15;44(4):1415-22. doi: 10.1016/j.neuroimage.2008.10.031. Epub 2008 Nov 5. PMID: 19027862; PMCID: PMC2648825. https://doi.org/10.1016/j.neuroimage.2008.10.031
- Fan Y, Resnick SM, Wu X, Davatzikos C. Structural and functional biomarkers of prodromal Alzheimer's disease: a high-dimensional pattern classification study. Neuroimage. 2008 Jun;41(2):277-85. doi: 10.1016/j.neuroimage.2008.02.043. Epub 2008 Mar 6. PMID: 18400519; PMCID: PMC2682533. Notes: Neuroimage Editor's Choice Award, the Organization for Human Brain Mapping. https://doi.org/10.1016/j.neuroimage.2008.02.043
- Davatzikos C, Fan Y, Wu X, Shen D, Resnick SM. Detection of prodromal Alzheimer's disease via pattern classification of magnetic resonance imaging. Neurobiol Aging. 2008 Apr;29(4):514-23. doi: 10.1016/j.neurobiolaging.2006.11.010. Epub 2006 Dec 14. PMID: 17174012; PMCID: PMC2323584. https://doi.org/10.1016/j.neurobiolaging.2006.11.010
- Fan Y, Batmanghelich N, Clark CM, Davatzikos C; Alzheimer's Disease Neuroimaging Initiative. Spatial patterns of brain atrophy in MCI patients, identified via high-dimensional pattern classification, predict subsequent cognitive decline. Neuroimage. 2008 Feb 15;39(4):1731-43. doi: 10.1016/j.neuroimage.2007.10.031. Epub 2007 Nov 1. PMID: 18053747; PMCID: PMC2861339. Notes: Neuroimage One of the Top Ten Cited Articles of 2008. https://doi.org/10.1016/j.neuroimage.2007.10.031
- Fan Y, Gur RE, Gur RC, Wu X, Shen D, Calkins ME, Davatzikos C. Unaffected family members and schizophrenia patients share brain structure patterns: a high-dimensional pattern classification study. Biol Psychiatry. 2008 Jan 1;63(1):118-24. doi: 10.1016/j.biopsych.2007.03.015. Epub 2007 Jun 6. PMID: 17555720; PMCID: PMC2190626. https://doi.org/10.1016/j.biopsych.2007.03.015
- Wang J, Korczykowski M, Rao H, Fan Y, Pluta J, Gur RC, McEwen BS, Detre JA. Gender difference in neural response to psychological stress. Soc Cogn Affect Neurosci. 2007 Sep;2(3):227-39. doi: 10.1093/scan/nsm018. PMID: 17873968; PMCID: PMC1974871. https://doi.org/10.1093/scan/nsm018
- Fan Y, Rao H, Hurt H, Giannetta J, Korczykowski M, Shera D, Avants BB, Gee JC, Wang J, Shen D. Multivariate examination of brain abnormality using both structural and functional MRI. Neuroimage. 2007 Jul 15;36(4):1189-99. doi: 10.1016/j.neuroimage.2007.04.009. Epub 2007 Apr 19. PMID: 17512218. https://doi.org/10.1016/j.neuroimage.2007.04.009
- Fan Y, Shen D, Gur RC, Gur RE, Davatzikos C. COMPARE: classification of morphological patterns using adaptive regional elements. IEEE Trans Med Imaging. 2007 Jan;26(1):93-105. doi: 10.1109/TMI.2006.886812. PMID: 17243588. https://doi.org/10.1109/TMI.2006.886812
- Davatzikos C, Ruparel K, Fan Y, Shen DG, Acharyya M, Loughead JW, Gur RC, Langleben DD. Classifying spatial patterns of brain activity with machine learning methods: application to lie detection. Neuroimage. 2005 Nov 15;28(3):663-8. doi: 10.1016/j.neuroimage.2005.08.009. Epub 2005 Oct 5. PMID: 16169252. https://doi.org/10.1016/j.neuroimage.2005.08.009
- Davatzikos C, Shen D, Gur RC, Wu X, Liu D, Fan Y, Hughett P, Turetsky BI, Gur RE. Whole-brain morphometric study of schizophrenia revealing a spatially complex set of focal abnormalities. Arch Gen Psychiatry. 2005 Nov;62(11):1218-27. doi: 10.1001/archpsyc.62.11.1218. PMID: 16275809. https://doi.org/10.1001/archpsyc.62.11.1218
- Yang J, Liu L, Jiang T, Fan Y. A modified Gabor filter design method for fingerprint image enhancement. Pattern Recognition Letters 24(12): 1805-1817, Aug 2003. https://doi.org/10.1016/S0167-8655(03)00005-9
- Fan Y, Jiang T, Evans DJ. Volumetric segmentation of brain images using parallel genetic algorithms. IEEE Trans Med Imaging. 2002 Aug;21(8):904-9. doi: 10.1109/TMI.2002.803126. PMID: 12472263. https://doi.org/10.1109/TMI.2002.803126
- Evans DJ, Fan Y, Jiang T. On the accelerated Richardson method (ARM) for solving positive definite linear systems. Neural, Parallel & Scientific Computations 10(2): 189-198, Jun 2002. https://dl.acm.org/citation.cfm?id=603328
- Fan Y, Jiang T, Evans DJ. The parallel genetic algorithm for electromagnetic inverse scattering of a conductor. International Journal of Computer Mathematics 79(5): 573-586, Jan 2002. https://doi.org/10.1080/00207160210955
- Jiang T, Yang F, Fan Y, Evans DJ. A Parallel Genetic Algorithm for Cell Image Segmentation. Electronic Notes in Theoretical Computer Science 46: 214-224, Aug 2001. https://doi.org/10.1016/S1571-0661(04)80988-5