| ShenLabGithub |
Penn Shen Lab Github Repositories |
| Fair_CCA |
Fair Canonical Correlation Analysis |
| FACIMS |
Fairness-Aware Class Imbalanced Learning on Multiple Subgroups |
| CB4AD |
STREMLINE Code Base for Alzheimer’s Disease |
| PMSCCA |
Preference Matrix Guided Sparse Canonical Correlation Analysis |
| SBFA |
Structural Bayesian Factor Analysis |
| AD_Colocalization |
Brain-wide genome-wide colocalization study |
| IGE |
IGE is a collection of software tools for mining high level imaging genetic associations via enrichment analysis. |
| RIGEA |
RIGEA is an R software tool for performing regional imaging genetic enrichment analysis. |
| NWAS-RP |
NWAS-RP is an R software tool for network-based GWAS re-prioritization and module identification. |
| IGEA |
IGEA is an R software tool for performing two dimensional imaging genetic enrichment analysis. |
| HDBIG |
HDBIG is a collection of software tools for high dimensional brain imaging genomics. |
| HDBIG-SR |
An HDBIG toolkit for sparse regression with a few regularization terms, including lasso, elastic net, L21 norm, group L21 norm, and network guided L21 norm. |
| HDBIG-SCCA |
An HDBIG toolkit for sparse association discovery with a knowledge-guided regularization term. |
| HDBIG-S2CCA |
An HDBIG toolkit for structured sparse association discovery with a few Sparse Canonical Correlation Analysis (SCCA) models, including the structure-aware SCCA model (S2CCA), the GraphNet SCCA model (GN-SCCA), the Graph OSCAR SCCA (GOSC-SCCA) model, and the Absolute value based GraphNet SCCA model (AGN-SCCA). |
| HDBIG-SCCA-NC |
An HDBIG toolkit for structured sparse association discovery with a generic non-convex penalty. |
| HDBIG-S2CCA-TLP |
An HDBIG toolkit for structured sparse association discovery with a truncated l1-norm penalty. |
| HDBIG-IGEA |
An HDBIG toolkit for mining high-level imaging genetic associations via applying enrichment analysis to two dimensional imaging genetic modules. |
| HDBIG-NWAS-RP |
An HDBIG toolkit for mining high-level imaging genetic associations using tissue-specific functional networks and network GWAS reprioritization strategy. |
| HDBIG-IGB-W |
An HDBIG web interface for archiving, visualization and interactive exploration of brain imaging genetics findings. |
| BECA |
BECA is a prototype Brain Explorer for Connectomic Analysis. |
| SPHARM-MAT |
SPHARM-MAT is a matlab-based 3D shape modeling and analysis toolkit, and is designed to aid statistical shape analysis for relating morphometric changes in 3D structures of interest to different conditions. |
