Selected Publications

Lehmann-Werman R, Magenheim J, Moss J, Neiman D, Abraham O, Piyanzin S, Zemmour H, Fox I, Dor T, Grompe M, Landesberg G, Loza BL, Shaked A, Olthoff K, Glaser B, Shemer R, Dor Y: Monitoring liver damage using hepatocyte-specific methylation markers in cell-free circulating DNA. JCI Insight 3(12): pii: 120687, June 21 2018.

Diamond JM, Cantu E, Porteous MK, Suzuki Y, Meyer KC, Lederer DJ, Milewski RK, Arcasoy S, D'Ovidio F, Bacchetta M, Sonett JR, Singh G, Costa J, Tobias JW, Rodriguez H, Van Deerlin VM, Olthoff KM, Shaked A, Chang BL, Christie JD, Clinical Trials in Organ Transplantation (CTOT)-03 Investigators: Peripheral blood gene expression changes associated with primary graft dysfunction after lung transplantation. American Journal of Transplantation 17(7): 1770-1777, July 2017 Notes: (Epub Feb. 17, 2017).

Abbas AA, Diamond JM, Chehoud C, Chang B, Kotzin JJ, Young JC, Imai I, Haas AR, Cantu E, Lederer DJ, Meyer KC, Milewski RK, Olthoff KM, Shaked A, Christie JD, Bushman FD, Collman RG: The perioperative lung transplant virome: Torque teno viruses are elevated in donor lungs and show divergent dynamics in primary graft dysfunction. American Journal of Transplantation 17(5): 1313-1324, May 2017 Notes: (Epub Nov. 4, 2016).

Shaked Abraham, Chang Bao-Li, Barnes Michael R, Sayre Peter, Li Yun R, Asare Smita, DesMarais Michele, Holmes Michael V, Guettouche Toumy, Keating Brendan J: An ectopically expressed serum miRNA signature is prognostic, diagnostic, and biologically related to liver allograft rejection. Hepatology 65(1): 269-280, Jan. 2017 Notes: (Epub Oct. 5, 2016).

International Genetics & Translational Research in Transplantation Network (iGeneTRAiN): Design and implementation of the International Genetics and Translational Research in Transplantation Network. Transplantation 99(11): 2401-2412, Nov. 2015 Notes: Dr. Loza was a collaborator on this work.

Li YR, van Setten J, Verma SS, Lu Y, Holmes MV, Gao H, Lek M, Nair N, Chandrupatla H, Chang B, Karczewski KJ, Wong C, Mohebnasab M, Mukhtar E, Phillips R, Tragante V, Hou C, Steel L, Lee T, Garifallou J, Guettouche T, Cao H, Guan W, Himes A, van Houten J, Pasquier A, Yu R, Carrigan E, Miller MB, Schladt D, Akdere A, Gonzalez A, Llyod KM, McGinn D, Gangasani A, Michaud Z, Colasacco A, Snyder J, Thomas K, Wang T, Wu B, Alzahrani AJ, Al-Ali AK, Al-Muhanna FA, Al-Rubaish AM, Al-Mueilo S, Monos DS, Murphy B, Olthoff KM, Wijmenga C, Webster T, Kamoun M, Balasubramanian S, Lanktree MB, Oetting WS, Garcia-Pavia P, MacArthur DG, de Bakker PI, Hakonarson H, Birdwell KA, Jacobson PA, Ritchie MD, Asselbergs FW, Israni AK, Shaked A, Keating BJ: Concept and design of a genome-wide association genotyping array tailored for transplantation-specific studies. Genome Medicine 7: 90, Oct. 1 2015.

Glessner JT, Li J, Liu Y, Tian L, Thomas KA, Golhar R, Desai A, Chang BL, Chang X, Hakonarson H: Penncnv-Exomeseq: Genotype improves copy number variant detection in exome sequencing. Austin Journal of Proteomics Bioinformatics & Genomics 2(1), 2015.

Chang Bao-Li, Hughes Lucinda, Chen David Y T, Gross Laura, Ruth Karen, Giri Veda N: Validation of association of genetic variants at 10q with prostate-specific antigen (PSA) levels in men at high risk for prostate cancer. BJU International 113(5b): E150-156, May 2014 Notes: (Epub Aug. 13, 2013).

Zeigler-Johnson Charnita, Morales Knashawn H, Spangler Elaine, Chang Bao-Li, Rebbeck Timothy R: Relationship of early-onset baldness to prostate cancer in African-American men. Cancer Epidemiology Biomarkers & Prevention 22(4): 589-596, Apr. 2013 Notes: (Epub Mar. 26, 2013).

Rebbeck Timothy R, Devesa Susan S, Chang Bao-Li, Bunker Clareann H, Cheng Iona, Cooney Kathleen, Eeles Rosalind, Fernandez Pedro, Giri Veda N, Gueye Serigne M, Haiman Christopher A, Henderson Brian E, Heyns Chris F, Hu Jennifer J, Ingles Sue Ann, Isaacs William, Jalloh Mohamed, John Esther M, Kibel Adam S, Kidd Lacreis R, Layne Penelope, Leach Robin J, Neslund-Dudas Christine, Okobia Michael N, Ostrander Elaine A, Park Jong Y, Patrick Alan L, Phelan Catherine M, Ragin Camille, Roberts Robin A, Rybicki Benjamin A, Stanford Janet L, Strom Sara, Thompson Ian M, Witte John, Xu Jianfeng, Yeboah Edward, Hsing Ann W, Zeigler-Johnson Charnita M: Global patterns of prostate cancer incidence, aggressiveness, and mortality in men of African descent. Prostate Cancer 2013: 560857, 2013 Notes: (Epub Feb. 13, 2013).