Selected Publications

Jaesik Kim§, Matei Ionita§, Matthew Lee, Michelle McKeague, Ajinkya Pattekar, Mark Painter, Joost Wagenaar, Van Truong, Dylan Norton, Divij Mathew, Yonghyun Nam, Sokratis Apostolidis, Patryk Orzechowski, Sang-Hyuk Jung, Jakob Woerner, Nuala J. Meyer, Allison R. Greenplate* Dokyoon Kim*, E. John Wherry*: Single-cell Masked Autoencoder: An accurate and interpretable automated immunophenotyper. AI for Scientific Discovery, Workshop at NeurIPS 2023 Oct 2023.

Sunghong Park, Sang Joon Son, Yonghyun Nam, Hyunjung Shin*: In-house data adaptation to public data: multisite MRI harmonization to predict Alzheimer’s disease conversion. Expert Systems with Applications 238: 122253, Oct 2023.

Seung Mi Lee, Manu Shivakumar, Brenda Xiao, Sang-Hyuk Jung, Yonghyun Nam, Jae-Seung Yun, Eun Kyung Choe, Soo Heon Kwak, Kwangsoo Kim, Young Mi Jung, Sohee Oh, Chan-Wook Park, Joong Shin Park, Jong Kwan Jun, Dokyoon Kim*: Genome-wide polygenic risk scores for hypertensive disease during pregnancy can also predict the risk for long-term cardiovascular disease. American Journal of Obstetrics and Gynecology 229(3): 298.e1-298.e19, Sep 2023.

Yonghyun Nam, Anastasia Lucas, Jae-Seung Yun, Seung Mi Lee, Ji Won Park, Ziqi Chen, Brian Lee, Xia Ning, Li Shen, Anurag Verma*, Dokyoon Kim*: Development of complemented comprehensive networks for rapid screening of repurposable drugs applicable to new emerging disease outbreaks. Journal of Translational Medicine 21(1): 415, June 2023.

Yonghyun Nam§, Sang-Hyuk Jung§, Jae-Seung Yun, Anurag Verma, Vivek Sriram, Hyunjung Shin, Hong-Hee Won*, Dokyoon Kim*: Discovering comorbid diseases using an inter-disease interactivity network based on biobank-scale PheWAS data. Bioinformatics 39(1): btac822, Jan 2023.

Seung Mi Lee§, Yonghyun Nam§, Eun Saem Choi, Young Mi Jung, Vivek Sriram, Jacob Leiby, Ja Nam Koo, Ig Hwan Oh, Byoung Jae Kim, Sun Min Kim, Sang Youn Kim, Gyoung Min Kim, Sae Kyung Joo, Sue Shin, Errol R. Norwitz, Chan-Wook Park, Jong Kwan Jun, Won Kim, Dokyoon Kim*, Joong Shin Park*: Development of early prediction model for pregnancy-associated hypertension with graph-based semi-supervised learning. Scientific Reports 12(1): 15793, Sep 2022.

Sang-Hyuk Jung, Jie Hao, Manu Shivakumar, Yonghyun Nam, Jaesik Kim, Min Jung Kim, Seung-Bum Ryoo, Eun Kyung Cho, Seung-Yong Jeong, Kyu Joo Park, Sung Chan Park, Dae Kyung Sohn, Jae Hwan Oh, Hong-Hee Won, Dokyoon Kim*, Ji Won Park*: Development and validation of a novel strong prognostic index for colon cancer through a robust combination of laboratory features for systemic inflammation: a prognostic immune nutritional index. British Journal of Cancer 126(11): 1539-1547, Mar 2022.

Vivek Sriram, Manu Shivakumar, Sang-Hyuk Jung, Yonghyun Nam, Lisa Bang, Anurag Verma, Seunggeun Lee, Eun Kyung Choe, Dokyoon Kim*: NETMAGE: A human disease phenotype map generator for the network-based visualization of phenome-wide association study results. Gigascience 11: giac002, Feb 2022.

Yonghyun Nam§, Sang-Hyuk Jung§, Anurag Verma, Vivek Sriram, Hong-Hee Won, Jae-Seung Yun, Dokyoon Kim*: netCRS: Network-based comorbidity risk score for prediction of myocardial infarction using biobank-scaled PheWAS data. Pacific Symposium on Biocomputing (PSB) 2022 27: 325-336, Jan 2022.

Vivek Sriram§, Yonghyun Nam§, Manu Shivakumar, Sang-Hyuk Jung, Anurag Verma, Seung Mi Lee, Dokyoon Kim*: A Network-Based Analysis of Disease Complication Associations for Obstetric Disorders in the UK Biobank. Journal of Personalized Medicine 11(12): 1382, Dec 2021.