Selected Publications

Antipova, M. V., Kulikova, V. A., Solovjeva, L. V., Kropotov, A. V., Svetlova, M. P., Yakimov, A. P., Nerinovski, K. B., Bakhmet, E. I., Nikiforov, A. A.: The Impact of Stimulation and Suppression of NAD+ Biosynthesis on the Maintenance of Pluripotency of Mouse Embryonic Stem Cells. Cell and Tissue Biology 17(5): 522-530, 2023.

Kropotov, A., Kulikova, V., Solovjeva, L., Yakimov, A., Nerinovski, K., Svetlova, M., Sudnitsyna, J., Plusnina, A., Antipova, M., Khodorkovskiy, M., Migaud, M. E., Gambaryan, S., Ziegler, M., Nikiforov, A.: Purine nucleoside phosphorylase controls nicotinamide riboside metabolism in mammalian cells. J Biol Chem 298(12): 102615, 2022.

Yakimov, A., Bakhlanova, I., Baitin, D.: Targeting evolution of antibiotic resistance by SOS response inhibition. Comput Struct Biotechnol J 19(pii): 777-783, 2021.

Kropotov, A., Kulikova, V., Nerinovski, K., Yakimov, A., Svetlova, M., Solovjeva, L., Sudnitsyna, J., Migaud, M. E., Khodorkovskiy, M., Ziegler, M., Nikiforov, A.: Equilibrative Nucleoside Transporters Mediate the Import of Nicotinamide Riboside and Nicotinic Acid Riboside into Human Cells. Int J Mol Sci 22(3): 78409. doi: 10.7554/eLife.78409. 2021.

Kulikova, V., Shabalin, K., Nerinovski, K., Yakimov, A., Svetlova, M., Solovjeva, L., Kropotov, A., Khodorkovskiy, M., Migaud, M. E., Ziegler, M., Nikiforov, A.: Degradation of Extracellular NAD(+) Intermediates in Cultures of Human HEK293 Cells. Metabolites 9(12): 9120293, 2019.

Kolchina, N., Khavinson, V., Linkova, N., Yakimov, A., Baitin, D., Afanasyeva, A., Petukhov, M.: Systematic search for structural motifs of peptide binding to double-stranded DNA. Nucleic Acids Res 47(20): 10553-10563, 2019.

Solovjeva, L. V., Panchenko, A. V., Shabalin, K. A., Nerinovski, K. B., Yakimov, A. P., Gubareva, E. A., Svetlova, M. P., Mudrak, O. S., Khodorkovskiy, M. A., Nikiforov, A. A., Kulikova, V. A.: Analysis of NAD and NAD-Dependent Protein Deacetylation in Mouse Tissues. Cell and Tissue Biology 12(6): 491-495, 2018.

Shabalin, K., Nerinovski, K., Yakimov, A., Kulikova, V., Svetlova, M., Solovjeva, L., Khodorkovskiy, M., Gambaryan, S., Cunningham, R., Migaud, M. E., Ziegler, M., Nikiforov, A.: NAD Metabolome Analysis in Human Cells Using (1)H NMR Spectroscopy. Int J Mol Sci. 19(12).: ijms19123906, 2018.

Yakimov, A., Pobegalov, G., Bakhlanova, I., Khodorkovskii, M., Petukhov, M., Baitin, D.: Blocking the RecA activity and SOS-response in bacteria with a short alpha-helical peptide. Nucleic Acids Res 45(16): 9788-9796, 2017.

Metelev, M., Osterman, I. A., Ghilarov, D., Khabibullina, N. F., Yakimov, A., Shabalin, K., Utkina, I., Travin, D. Y., Komarova, E. S., Serebryakova, M., Artamonova, T., Khodorkovskii, M., Konevega, A. L., Sergiev, P. V., Severinov, K., Polikanov, Y. S.: Klebsazolicin inhibits 70S ribosome by obstructing the peptide exit tunnel. Nature Chemical Biology 13(10): 1129-1136, 2017.

Yakimov, A. P., Afanaseva, A. S., Khodorkovskiy, M. A., Petukhov, M. G.: Design of Stable alpha-Helical Peptides and Thermostable Proteins in Biotechnology and Biomedicine. Acta Naturae 8(4): 70-81, 2016.

Kulikova, V., Shabalin, K., Nerinovski, K., Dolle, C., Niere, M., Yakimov, A., Redpath, P., Khodorkovskiy, M., Migaud, M. E., Ziegler, M., Nikiforov, A.: Generation, Release, and Uptake of the NAD Precursor Nicotinic Acid Riboside by Human Cells. J Biol Chem 290(45): 27124-27137, 2015.

Yakimov, A., Rychkov, G., Petukhov, M.: De novo design of stable alpha-helices. Methods Mol Biol 1216: 1-14, 2014.

Petukhov, M., Dagkessamanskaja, A., Bommer, M., Barrett, T., Tsaneva, I., Yakimov, A., Queval, R., Shvetsov, A., Khodorkovskiy, M., Kas, E., Grigoriev, M.: Large-scale conformational flexibility determines the properties of AAA+ TIP49 ATPases. Structure 20(8): 1321-31, 2012.