Elizabeth A Heller, PhD

faculty photo
Associate Professor of Systems Pharmacology and Translational Therapeutics
Member, ITMAT
Member, Penn Epigenetics Institute
Member, ENDD Center
Department: Systems Pharmacology and Translational Therapeutics

Contact information
3400 Civic Center Boulevard
SCTR 10-115 Smilow
Philadelphia, PA 19104
Education
HS
Stuyvesant High School, 1998.
BA (Biology)
University of Pennsylvania, 2002.
PhD (Molecular Biology)
The Rockefeller University, 2009.
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Description of Research Expertise

The Heller Lab studies the mechanisms by which epigenome remodeling regulates neuronal gene function and behavior. To approach this problem, we directly manipulate histone and DNA modifications at specific genes in vivo, using viral delivery of novel epigenetic editing tools, such as zinc-finger transcription factors and CRISPR/dCas9-fusion proteins. We use high-throughput sequencing to identify genes at which drug- or stress-regulation of a known epigenomic signature correlates with changes in expression. We can then target individual modifications and examine their causal relevance to transcriptional regulation and subsequent behavioral adaptations. This ‘bottom-up’ approach allows direct elucidation of the causal relevance of epigenetic remodeling in the brain. Because addiction and depression persist long after cessation of the harmful experience, epigenetic remodeling is an attractive underlying mechanism and presents an intriguing target for therapeutic intervention.

Selected Publications

Hokenson RE, Rodríguez-Acevedo KL, Chen Y, Short AK, Samrari SA, Devireddy B, Jensen BJ, Winter JJ, Gall CM, Soma KK, Heller EA, Baram TZ.: Hippocampal estrogen levels, receptor types, and epigenetics contribute to sex-specific memory vulnerabilities to concurrent acute stresses. Neuron 114(8): 1454-1472, April 2026 Notes: Press coverage: Horvath E, How estrogen in the brain impacts stress and trauma response. Penn Medicine News, April 7 2026. Lanese N, Estrogen levels in both the male and female brain may shape memory's resilience in face of stress. Live Science, June 19 2026.

Heller EA, Bintu L, Rots MG. : Epigenetic editing: from concept to clinic. Nat Rev Drug Discov. 25(3): 227-248, March 2026 Notes: Featured in: Dance A. Epigenetic editing makes its mark. Nature. 2026 Jul;655(8123):812-814. doi: 10.1038/d41586-026-02151-x. PMID: 42443546.

Rodríguez-Acevedo KL, Ng E, Murphy MD, Eusebio-Severino P, Czarnecki KS, Heller EA: Hippocampal Cdk5 is regulated by distinct stress paradigms in male and female mice. bioRxiv [Preprint] doi: 10.64898/2025.12.23.696096. 2026 Notes: Under invited revision, Genes Brain & Behavior.

Rodríguez-Acevedo KL, Winter JJ, Alvarez MI, Sase A, Czarnecki KS, Heller EA: Neuron-specific epigenetic repression of Cdk5 impairs hippocampal-dependent memory in male and female mice. bioRxiv [Preprint] doi: 10.64898/2026.04.08.716689 2026 Notes: Revision under review, Nature Communications.

Murphy MD, Krick KS, Zhang S, Heller EA: Corticosterone drives behavioral inflexibility via plasticity-related gene expression in the dorsal striatum. Neuropsychopharmacology December 2025 Notes: Accepted.

Winter JJ, Hooks M, Krick KS, Goldhamer A, DiTullio RW, Czarnecki KS, Ekobeni CE, Han C, Rodríguez-Acevedo KL, Hughes BW, Estill M, Teague CD, Ramakrishnan AW, Shen L, Nestler EJ, Heller EA. : Epigenetic editing of Cartpt promotes acquisition and extinction of cocaine memory. bioRxiv doi: https://doi.org/10.1101/2025.11.20.689329 November 2025 Notes: Revision under review, Nature Neuroscience Cited in Dance A. Epigenetic editing makes its mark. Nature. 2026 Jul;655(8123):812-814.

Sichlinger L, Reilly MB, Arora S, Zhang S, Marotta N, Rodríguez-Acevedo KL, Hooks M, Czarnecki KS, Winter JJ, Waxman EA, Dungan LV, Hong I, Araki Y, Johnson R, Huganir RL, Pavani G, French DL, Davidson BL, Prosser BL, Heller EA: CRISPR-mediated transcriptional activation as a mutation-independent therapeutic strategy for SYNGAP1-related intellectual disability. bioRxiv doi: 10.1101/2025.10.28.685100 October 2025 Notes: Revision under review, Biological Psychiatry.

Heller EA: Intrinsic deacetylation represses intrinsic excitation: HDAC5 and cocaine substance use disorder. Biological Psychiatry 98(8): 580-581, Oct 2025.

Rodgers S, Heller EA, Corder G: Psilocybin-enhanced fear extinction linked to bidirectional modulation of cortical ensembles. Nature Neurosci. 28(6): 1311-1326, Jun 2025.

Bhatnagar A, Heller EA: Alternative splicing in addiction. Current Opinion in Genetics & Development 92, June 2025.

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Last updated: 07/22/2026
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