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Danielle L. Mowery, PhD, MS, MS, FAMIA, FACMI
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Assistant Professor of Informatics in Biostatistics and Epidemiology at the Hospital of the University of Pennsylvania
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Chief Research Information Officer, Penn Medicine
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Scientific Director, Clinical Research Informatics Core, Institute for Biomedical Informatics
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Senior Fellow, Institute for Biomedical Informatics
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Member, Penn Institute for Translational Medicine and Therapeutics (ITMAT)
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Associate Member, Abramson Cancer Center, Cancer Control Program
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Co-Methods Core Director, Penn Innovation in Suicide Prevention Implementation Research (INSPIRE) Center
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Data Science & Informatics Core Associate Director, Penn Skin Biology and Diseases Resource-based Center
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Member, Penn Center for Nutritional Science and Medicine (PenNSAM)
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Member, Penn Medicine Center for Applied Health Informatics (CAHI)
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Member, Penn Medicine Center for Applied Health Informatics
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Co-Director, Data Integration Core, Penn Obstructive Sleep Apnea Center
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Department: Biostatistics and Epidemiology
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Institute for Biomedical Informatics
22 University of Pennsylvania
1a School of Medicine
1b A206 Richards Hall
35 3700 Hamilton Walk
Philadelphia, PA 19104
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22 University of Pennsylvania
1a School of Medicine
1b A206 Richards Hall
35 3700 Hamilton Walk
Philadelphia, PA 19104
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Office: (215) 746-6677
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Education:
21 7 BS 1f (Minor in Chemistry) c
48 Biological Sciences, University of Pittsburgh , 2006.
21 7 MS 38 (Concentration in Health Information Systems) c
52 Health & Rehabilitation Science, University of Pittsburgh, 2008.
21 7 MS 39 (Concentration in Natural Language Processing) c
49 Biomedical Informatics, University of Pittsburgh, 2010.
21 8 PhD 39 (Concentration in Natural Language Processing) c
49 Biomedical Informatics, University of Pittsburgh, 2014.
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Permanent link21 7 BS 1f (Minor in Chemistry) c
48 Biological Sciences, University of Pittsburgh , 2006.
21 7 MS 38 (Concentration in Health Information Systems) c
52 Health & Rehabilitation Science, University of Pittsburgh, 2008.
21 7 MS 39 (Concentration in Natural Language Processing) c
49 Biomedical Informatics, University of Pittsburgh, 2010.
21 8 PhD 39 (Concentration in Natural Language Processing) c
49 Biomedical Informatics, University of Pittsburgh, 2014.
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1a1 Ketchem CJ, Vurgun U, Wang A, Thomas S, Batugo A, Faul GW, Lynch KL, Dellon ES, Mowery DL*, Lewis JD*: Diagnostic Performance of ICD Codes for Eosinophilic Gastrointestinal Diseases Varies by Reference Standard Definition and Disease Subtype. American College of Gastroenterology Conference Oct 2025 Notes: accepted. *shared co-last authorship.
186 Ketchem CJ, Vurgun U, Wang A, Thomas S, Batugo A, Faul GW, Lynch KL, Dellon ES, Mowery DL*, Lewis JD*: Large Language Models Combined with a Single Diagnostic Code Improve Identification of Eosinophilic Esophagitis. American College of Gastroenterology Conference Oct 2025 Notes: accepted. *shared co-last authorship.
2ad Bergquist T, Loomba J, Pfaff E, Xia F, Zhao Z, Zhu Y, Mitchell E, Bhattacharya B, Shetty G, Munia T, Delong G, Tariq A, Butzin-Dozier Z, Ji Y, Li H, Coyle J, Shi S, Philips RV, Mertens A, Pirracchio R, van der Laan M, Colford JM Jr, Hubbard A, Gao J, Chen G, Velingker N, Li Z, Wu Y, Stein A, Huang J, Dai Z, Long Q, Naik M, Holmes J, Mowery D, Wong E, Parekh R, Getzen E, Hightower J, Blase J; Long COVID Computational Challenge Participants; N3C Consortium: Crowd-sourced Machine Learning Prediction of Long COVID using Data from the National COVID Cohort Collaborative. EBioMedicine 108(7): 105333, Sept 2024.
181 Becker M, Hwang S, Schriver E, Douma C, Duffy C, Atkins J, McShane C, Lubken J, Hanish A, McGreevey JD, Regli S, Mowery DL: Automatically Identifying Event Reports of Workplace Violence and Communication Failures using Large Language Models. AMIA Jt Summits Transl Sci Proc. Pittsburgh, PA Page: 74-83, Jun 2025.
1bf Vurcan U, Hwang S, Thomas S, Batugo A, Acevedo A, Kaviyarasu A, Abella BS, OJL Mitchell, Mowery DL: Reliability in AI-Assisted Critical Care: Assessing Large Language Model Robustness and Instruction Following for Cardiac Arrest Identification. NeurIPS 2024, the Thirty-Eighth Annual Conference on Neural Information Processing Systems Workshop. Vancouver, Canada Dec 2024.
1ee Das S, Ge Y, Guo y, Rajwawl S, Hairston JM, Powell J, Walker D, Peddireddy S, Lakamana S, Bozkurt S, Reyna M, Sameni R, Xiao Y, Kkim S, Chandler R, Hernandez N, Mowery D, Wightman R, Love J, Spadaro A, Perrone J, Sarker A: Two-layer Retrieval Augmented Generation Framework for Low-resource Medical Question-Answering: Proof of Concept using Reddit Data. J Med Internet Res 27: e66220, Jan 2025 Notes: doi: 10.2196/66220.
1af Li C, Mowery DL, Ma X, Yang R, Vurgun U, Hwang S, Donnelly HK, Bandhey H, Akhtar Z, Senathirajah Y, Sadhu EM, Getzen E, Freda PJ, Long Q, Becich MJ: Realizing the Potential of Social Determinants Data: A Scoping Review of Approaches for Screening, Linkage, Extraction, Analysis and Interventions. Journal of Clinical and Translational Science 8(1), Oct 2024.
201 Urbanowicz RJ, Bandhey H, Keenan BT, Maislin G, Hwang S, Mowery DL, Lynch SM, Mazzotti DR, Han F, Li QY, Penzel T, Tufik S, Bittencourt L, Gislason T, de Chazal P, Singh B, McArdle N, Chen N-H, Pack A, Schwab RJ, Cistulli PA, Magalang UJ: STREAMLINE: An Automated Machine Learning Pipeline for Biomedicine Applied to Examine the Utility of Photography-based Phenotypes for OSA Prediction Across International Sleep Centers. arXiv Dec 2023.
186 Wolk CB, Green KL, Cidav Z, Mowery DL, Gallop R, Reilly M, Stanley B, Mandell DS, Oquendo MA, Jager-Hyman S: Safety Planning Intervention and Follow-up: A Telehealth Service Model for Suicidal Individuals in Emergency Department Settings: Study Design and Protocol. Contemporary Clinical Trials 140: 107492, Mar 2024.
36e Hutch MR, Son J, Le TT, Hong C, Wang X, Shakeri Z, Abad H, Morris M, Gutiérrez-Sacristán A, Klann JG, Spiridou A, Batugo A, Bellazzi R, Benoit V, Bonzel C-L, Bryant WA, Chiudinelli L, Cho K, Das P, González T, Hanauer DA, Henderson DW, Ho Y-L, Loh NHW, Makoudjou A, Makwana S, Malovini A, Moal B, Mowery DL, Neuraz A, Samayamuthu MJ, Vidorreta FJS, Schriver ER, Schubert P, Talbert J, Tan ALM, Tan BWL, Tan BWQ, Tibollo V, Tippmann P, Verdy G, Yuan W, Avillach P, Gehlenborg N, Omenn GS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Visweswaran S, Cai T, Luo Y, Xia Z: Neurological Diagnoses in Hospitalized COVID-19 Patients Associated with Adverse Outcomes: a Multinational Cohort Study. PLOS Digital Health 3(4): e0000484, Apr 2024 Notes: doi: 10.1371/journal.pdig.0000484.
120 Wang A, Fulton R, Hwang S, Margolis D, Mowery DL: Patient Phenotyping for Atopic Dermatitis with Transformers and Machine Learning. JMIR Formative Research 8: e52200, Jan 2024 Notes: doi: 10.1101/2023.08.25.2329463.
150 Poulsen M, Freda PJ, Troiani V, Mowery DL: Developing a Framework to Infer Opioid Use Disorder Severity from Clinical Notes to Inform Natural Language Processing Methods: A Characterization Study. JMIR Mental Health 11: e53366, Jan 2024 Notes: doi: 10.2196/53366.
1bd Brown L, Webster JL, Tran JT, Wolfe JR, Golinkoff J, Patel E, Arcomano AC, Ben Nathan JB, Azat O'Connor AA, Zhu Y, Oquendo M, Brown G, Mandell D, Mowery D, Bauermeister J: Suicide Prevention Intervention for Vulnerable Emerging Adult Sexual Minorities: A Pilot Hybrid Effectiveness Randomized Control Trial. JMIR Res Protoc 12: e48177, Sept 2023 Notes: doi: 10.2196/48177.
1ce Getzen E, Tan A, Brat G, Omenn G, Strasser Z, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), *Long Q, *Holmes J, *Mowery D: Leveraging Informative Missing Data to Learn about Acute Respiratory Distress Syndrome and Mortality in Long-term Hospitalized COVID-19 Patients throughout the Years of the Pandemic. AMIA Annual Symp. New Orleans, LA Page: 942-950, Jan 2024.
118 Velingker N, Li Z, Wu Y, Stein A, Huang J, Dai Z, Long Q, Naik M, Holmes J, Mowery D, Wong E: A Robust and Adaptive Model for Long COVID Detection. NIH N3C Long COVID Challenge 2023 Notes: Honorable mention.
15d Yang A, Kamien S, Davoudi A, Hwang S, Gandhi M, Urbanowicz R, Mowery D: Relation Detection to Identify Stroke Assertions from Clinical Notes using Natural Language Processing. Stud Health Technol Inform 310: 619-623, Jan 2024 Notes: Sydney, Australia; doi: 10.3233/SHTI231039.
15a Hwang S, Reddy S, Wainwright K, Schriver E, Cappola A, Mowery D: Using Natural Language Processing to Extract and Classify Symptoms among Patients with Thyroid Dysfunction. Stud Health Technol Inform 310: 614-618, Jan 2024 Notes: MedInfo 2023 Conference. Sydney, Australia.
114 King AJ, Potter K, Seaman JB, Chiyka EA, Hileman BA, Cooper GF, Mowery DL, Angus DC, Kahn JM: Measuring Performance on the ABCDEF Bundle during Interprofessional Rounds: Interrater Reliability of a Nurse-based Assessment Tool 16 Am J Crit Care 2e 32(2): 92–99, Mar 2023.
122 King AJ, Kahn JM, Brant EB, Cooper GF, Mowery DL: Initial Development of an Automated Platform for Assessing Trainee Performance on Case Presentations. American Thoracic Society (ATS) Scholar 3(4): 548-560, Sept 2022.
145 Lee NS, Luong T, Rosin R, Asch DA, Sevinc C, Balachandran M, Josephs M, Rusk MH, McHenry NL, Asch E, *Mowery DL, *Chaiyachati: Developing a Chatbot-Clinician Model for Hypertension Management. NEJM Catalyst Innovations in Care Delivery 3(11), Oct 2022.
423 Hong C, Zhang HG, L'Yi S, Weber G, Avillach P, Tan BWQ, Gutiérrez-Sacristán A, Bonzel CL, Palmer NP, Malovini A, Tibollo V, Luo Y, Hutch MR, Liu M, Bourgeois F, Bellazzi R, Chiovato L, Sanz Vidorreta FJ, Le TT, Wang X, Yuan W, Neuraz A, Benoit V, Moal B, Morris M, Hanauer DA, Maidlow S, Wagholikar K, Murphy S, Estiri H, Makoudjou A, Tippmann P, Klann J, Follett RW, Gehlenborg N, Omenn GS, Xia Z, Dagliati A, Visweswaran S, Patel LP, Mowery DL, Schriver ER, Samayamuthu MJ, Kavuluru R, Lozano-Zahonero S, Zöller D, Tan ALM, Tan BWL, Ngiam KY, Holmes JH, Schubert P, Cho K, Ho YL, Beaulieu-Jones BK, Pedrera-Jiménez M, García-Barrio N, Serrano-Balazote P, Kohane I; Consortium for Clinical Characterization of COVID-19 by EHR (4CE), South A, Brat GA, Cai T: Changes in Laboratory Value Improvement and Mortality Rates over the Course of the Pandemic: an International Retrospective Cohort Study of Hospitalised Patients Infected with SARS-CoV-2. BMJ Open 12(6): e057725, Jun 2022.
17e King AJ, Mowery DL, Cooper GF, Kahn JM : Natural Language Processing to Computationally Generate Feedback on the Quality of Trainees' Oral Case Presentations in the Intensive Care Unit. American Thoracic Society Annual Meeting Page: A2449-A2449, May 2022 Notes: B23. THE ICU GRAB BAG: A SESSION OF MUST HAVES.
121 Kennedy EE, Davoudi A, Hwang S, Freda P, Urbanowicz R, Bowles K, Mowery DL: Identifying Barriers to Post-Acute Care Referral and Characterizing Negative Patient Preferences Among Hospitalized Older Adults Using Natural Language Processing 2 2 de AMIA Annual Symp. Washington, DC Page: 606-615, Apr 2023 Notes: Washington DC. Nov 5-9, 2022. **AMIA Nursing Informatics Work Group Student Paper Award. **Ann Wolbert Burgess Endowed Student Award.
39c Tan BWL, Tan B, Tan ALM, Schriver ER, Gutiérrez-Sacristán A, Das P, Yuan W, Hutch MR, García-Barrio N, Jimenez MP, Abu-el-rub N, Morris M, Moal B, Schubert P, Cho K, Ho Y-L, Patel LP, Dagliati A, Neuraz A, Klann JG, South AM, Visweswaran S, Hanauer DA, Maidlow SE, Liu M, Mowery DL, Makoudjou A, Tippmann P, Zöller D, Brat GA, Luo Y, Avillach P, Bellazzi R, Chiovato L, Malovini A, Tibollo V, Samayamuthu MJ, Balazote PS, Xia Z, Loh NHW, Chiudinelli L, Bonzel C-L, Hong C, Zhang HG, Weber GM, Kohane IS, Cai T, Omenn GS, Holmes JH; Ngiam KY, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE): Long-term Kidney Function Recovery and Mortality after COVID-19-associated Acute Kidney Injury: an International Multi-centre Observational Cohort Study. eClinicalMedicine 55: 101724, Nov 2022 Notes: doi: 10.1016/j.eclinm.2022.101724.
195 Poulsen MN, Freda PJ, Troiani V, Davoudi A, Mowery DL: Classifying Characteristics of Opioid Use Disorder From Hospital Discharge Summaries Using Natural Language Processing. Front Public Health 10: 850619, May 2022 Notes: Special Issue: Computational Methods in Substance Use and Addiction Research; doi: 10.3389/fpubh.2022.850619.
24a Klann JG, Strasser ZH, Hutch MR, Kennedy CJ, Marwaha JS, Morris M, Samayamuthu MJ, Pfaff AC, Estiri H, South AM, Weber GM, Yuan W, Avillach P, Wagholikar KB, Luo Y; Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Omenn GS, Visweswaran S, Holmes JH, Xia Z, Brat GA, Murphy SN: Distinguishing Admissions Specifically for COVID-19 From Incidental SARS-CoV-2 Admissions: National Retrospective Electronic Health Record Study. J Med Internet Res 24(5): e37931, May 2022 Notes: consortium authorship.
340 Moal B, Orieux A, Ferté T, Neuraz A, Brat GA, Avillach P, Bonel C-L, Cai T, Cho K, Cossin S, Griffier R, Hanauer DA, Haverkamp C, Ho Y-L, Hong C, Hutch MR, Klann JG, Le TT, Loh NHW, Luo Y, Makoudjou A, Morris M, Mowery DL, Olsen KL, Patel LP, Samayamuthu MJ, Vidorreta FJS, Schriver ER, Schubert P, Verdy G, Visweswaran S, Wang X, Weber GM, Xia Z, Yuan W, Zhang HG, Zöeller D, Kohane IS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Boyer A, Jouhet V: Acute Respiratory Distress Syndrome after SARS-CoV-2 Infection on Young Adult Population: International Observational Federated Study based on Electronic Health Records through the 4CE Consortium ARDS after SARS-CoV-2 Infection on Young Adult. Plos One 18(1): e0266985, Jan 2022.
314 Tan ALM, Getzen E, Hutch MR, Strasser ZH, Gutiérrez-Sacristán A, Le TT, Dagliati A, Morris M, Hanauer DA, Moal B, Bonzel C-L, Yuan W, Chiudinelli L, Das P, Zhang HG, Aronow BJ, Avilach P, Brat GA, Cai T, Hong C, La Cava WG, Loh NHW, Luo Y, Murphy SN, Ngiam KY, Omenn GS, Patel LP, Samayamuthu MK, Schriver ER, Anad ZSH, Tan BWL, Tan BWQ, Visweswaran S, Wang X, Weber GM, Xia Z, Verdy B, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Long Q*, Mowery DL*, Holmes J*: Informative Missingness: What Can We Learn from Patterns in Missing Laboratory Data in the Electronic Health Record? J Biomed Inform 139: 104306, Mar 2023 Notes: *shared co-senior authorship; doi: 10.1016/j.jbi.2023.104306.
31c Hutch MR, Son J, Le TT, Hong C, Wang X, Shakeri H, Abad Z, Morris M, Gutiérrez-Sacristán A, Klann JG, Spiridou A, Bellazzi R, Benoit V, Bonzel C-L, Bryant WA, Cho K, Das P, Hanauer DA, Henderson DW, Ho Y-L, Loh NHW, Makoudjou A, Malovini A, Moal B, Mowery DL, Samayamuthu MJ, Sanz Vidorreta FJ, Schriver ER, Schubert P, Talbert J, Tan ALM, Tan BWL, Tan BWQ, Tibollo V, Yuan W, Avillach P, Gehlenborg N, Omenn GS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Visweswaran S, Cai T, Luo Y, Xia Z: Neurological Diagnoses in Hospitalized COVID-19 Patients Associated With Adverse Outcomes: A Multinational Cohort Study. PLOS Digit Health 3(4): e0000484, Apr 2024 Notes: preprint with the Lancet 2022.
11b Getzen E, Ungar L, Mowery D, Jiang X, Long Q: Mining for Equitable Health: Assessing the Impact of Missing Data in Electronic Health Records. J Biomed Inform 139, Mar 2023 Notes: doi: 10.1016/j.jbi.2022.104269.
3e8 Brat G, Weber G, Hong C, Palmer N, Avillach P, Murphy S, Gutiérrez-Sacristán A, Xia Z, Serret-Larmande A, Neuraz A, Omenn G, Visweswaran S, Klann J, South A, Loh NHW, Cannataro M, Beaulieu-Jones B, Bellazzi R, Agapito G, Alessiani M, Aronow B, Bell D, Benoit V, Bourgeois F, Chiovato L, Dagliati A, DuVall S, García N, Hanauer D, Holmes J, Issitt R, Keller M, Liu M, Luo Y, Malovini A, Mandl K, Mao C, Moore J, Morris J, Morris M, Mowery D, Ngiam KY, Patel L, Pedrera M, Schriver E, L'Yi S, Bonzel C-L, Cho K, Ho Y-L, Lynch K, Maidlow S, Matheny M, Ramoni R, Serrano-Balazote P, Schubert P, Spiridou A, Tan A, Tan B, Tibollo V, Torti C, Trecarichi E, Wang X, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Kohane I, and Cai T: International Comparisons of Laboratory Values from the 4CE Collaborative to Predict COVID-19 Mortality. NPJ Digit Med 5(1), Jun 2022 Notes: doi: 10.1038/s41746-022-00601-0.
3d5 Wang X, Zhang HG, Xiong X, Hong C, Weber GM, Brat GA, Bonzel C-L, Luo Y, Duan R, Palmer NP, Hutch MR, Gutiérrez-Sacristán A, Bellazzi R, Chiovato L, Cho K, Dagliati A, Estiri H, García-Barrio N, Griffier R, Hanauer DA, Ho Y-L, Holmes JH, Keller MS, Klann JG, L’Yi S, Lozano-Zahonero S, Maidlow SE, Makoudjou A, Malovini A, Moal B, Moore JH, Morris M, Mowery DL, Murphy SN, Neuraz A, Ngiam KY, Omenn GS, Patel LP, Pedrera-Jiménez M, Prunotto A, Samayamuthu MJ, Vidorreta FJS, Schriver ER, Schubert P, Serrano-Balazote P, South AM, Tan ALM, Tan BWL, Tibollo V, Tippmann P, Visweswaran S, Xia Z, Yuan W, Zöller D, Kohane IS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Avillach P, Guo Z, Cai T: SurvMaximin: Robust Federated Approach to Transporting Survival Risk Prediction Models. J Biomed Inform 134: 104176, Oct 2022 Notes: doi: 10.1016/j.jbi.2022.104176. Epub 2022 Aug 23.
1c9 Hwang S, Urbanowicz, Lynch S, Vernon T, Bresz K, Giraldo C, Kennedy E, Leabhart M, Bleacher T, Ripchinski M, *Mowery DL, *Oyer R: Towards Predicting 30-Day Readmission among Oncology Patients: Identifying Timely and Actionable Risk Factors. JCO Clinical Cancer Informatics 7: e2200097, Feb 2023 Notes: *shared co-senior authorship; accepted for publication; doi: 10.1200/CCI.22.00097.
19e Davoudi A, Lee N, Luong T, Delaney T, Asch E, Chaiyachati K*, Mowery D*: Identifying Medication-related Intents from a Bidirectional Text Messaging Platform for Hypertension Management: An Unsupervised Learning Approach. J Med Internet Res 24(6), Jun 2022 Notes: *shared co-senior authorship; **shared co-last authorship; doi: 10.2196/36151.
18f Davoudi A, Lee NS, Chivers C, Delaney T, Asch EL, Reitz C, Mehta SJ, Chaiyachati KH, Mowery DL: Patient Interaction Phenotypes With an Automated Remote Hypertension Monitoring Program and Their Association With Blood Pressure Control: Observational Study. J Med Internet Res 22(12): e22493, Dec 2020 Notes: doi: 10.2196/22493.
155 Davoudi A, Yu S, Doucette A, Gabriel P, Miller M, Williams H, Desai H, Le A, Stoeckert C, Maxwell K, Mowery D: Classifying Progression Status Statements from Radiology Exams among Non-Small Cell Lung Cancer Patients using Natural Language Processing. medRxiv Nov 2021.
1a7 Davoudi A, Tissot H, Doucette A, Gabriel PE, Parikh R, *Mowery DL, *Miranda S: Using Natural Language Processing to Classify Serious Illness Communication in Oncology. AMIA Jt Summits Transl Sci Proc (AMIA Informatics Summit. Washington, DC) accepted for conference; available on medRxiv, Page: 168–177, May 2022 Notes: *shared co-last authorship.
13b Cappola AR, Schriver ER, Mowery DL, Wollack C, Ives CT, Gonzales R, Cappella JN: Effect of Targeted Messaging on Return to In-Person Visits During the COVID-19 Pandemic: A Randomized Clinical Trial. JAMA Network Open 4(6): e2115211, Jun 2021.
19e Wang L, Desai H, Verma SS, Le A, Hausler R, Verma A, Judy R, Doucette A, Gabriel PE, Nathanson KL, Damrauer S, Mowery DL, Ritchie MD, Kember RL, Maxwell KN: Performance of Polygenic Risk Scores for Cancer Prediction in a Racially Diverse Academic Biobank. Genetics in Medicine 24(3): 601-609, Mar 2021 Notes: Originally published in medRxiv.
149 Yu S, Le A, Feld E, Schriver E, Gabriel P, Doucette A, Narayan V, Feldman M, Schwartz LE, Maxwell K, Mowery D: A Natural Language Processing-Assisted Extraction System for Gleason Scores: Development and Usability Study. JMIR Cancer 7(2): e27970, Jul 2021.
141 Boland MR, Liu J, Balocchi C, Meeker JR, Bai R, Mellis I, Mowery D, Herman D: A Method to Link Neighborhood-Level Covariates to COVID-19 Infection Patterns in Philadelphia Using Spatial Regression. AMIA Informatics Summit Page: 545–554, Mar 2021.
149 Parikh S, Davoudi A, Yu S, Giraldo C, Schriver E, Mowery D: Lexicon Development for COVID-19-related Concepts Using Open-source Word Embedding Sources: An Intrinsic and Extrinsic Evaluation. JMIR Med Inform 9(2): e21679, Feb 2021 Notes: doi: 10.2196/21679.
1e9 Le TT, Gutiérrez-Sacristán A, Son J, Hong C, South AM, Beaulieu-Jones BK, Loh NHW, Luo Y, Morris M, Ngiam KY, Patel LP, Samayamuthu MJ, Schriver E, Tan AL, Moore J, Cai T, Omenn GS, Avillach P, Kohane IS, Visweswaran S*, Mowery DL*, Xia Z*: Multinational Prevalence of Neurological Phenotypes in Patients Hospitalized with COVID-19. Scientific Reports 11(1): 20238, Oct 2021 Notes: Originally published in medRxiv.
14a Anderson TS, Leonard S, Zhang AJ, Madden E, Mowery D, Chapman WW, Keyhani S: Trends in Low-Value Carotid Imaging in the Veterans Health Administration From 2007 to 2016. JAMA Netw Open 3(9): e2015250, Sep 2020 Notes: doi: 10.1001/jamanetworkopen.2020.15250.
144 Freedman H, Williams H, Birtwell D, Miller M, Mowery D, Stoeckert C: A Novel Tool for Standardizing Clinical Data in a Semantic Common Data Model. Journal of Biomedical Informatics: X 8: 100086, Dec 2020 Notes: Epub: doi: 10.1016/j.yjbinx.2020.100086.
103 Harris JR, Hatch R, Vallabhajosyula P, Lo Y, Mowery D, Patel N: AM vs. PM Administration of Warfarin following Cardiac Surgery. The Journal of Pharmacy Technology 37(2): 89-94, Apr 2021.
19c Keyhani S, Cheng EM, Hoggatt KJ, Austin PC, Madden E, Hebert PL, Halm EA, Naseri A, Johanning JM, Mowery D, Chapman WW, Bravata DM: Comparative Effectiveness of Carotid Endarterectomy vs Initial Medical Therapy in Patients With Asymptomatic Carotid Stenosis. JAMA Neurol 77(9): 1110-1121, Sep 2020 Notes: doi: 10.1001/jamaneurol.2020.2784.
189 Moore JH, Barnett I, Boland MR, Chen Y, Demiris G, Gonzalez-Hernandez G, Herman DS, Himes BE, Hubbard RA, Kim D, Morris JS, Mowery DL, Ritchie MD, Shen L, Urbanowicz R, Holmes JH: Ideas for How Informaticians Can Get Involved with COVID-19 Research. BioData Mining 13: 3, May 2020 Notes: doi: 10.1186/s13040-020-00213-y.
519 Weber GM, Hong C, Palmer NP, Avillach P, Murphy SN, Gutiérrez-Sacristán A, Xia Z, Serret-Larmande A, Neuraz A, Omenn GS, Visweswaran S, Klann JG, South AM, Loh NHW, Cannataro M, Beaulieu-Jones BK, Bellazzi R, Agapito G, Alessiani M, Aronow BJ, Bell DS, Bellasi A, Benoit V, Beraghi M, Boeker M, Booth J, Bosari S, Bourgeois FT, Brown NW, Bucalo M, Chiovato L, Chiudinelli L, Dagliati A, Devkota B, DuVall SL, Follett RW, Ganslandt T, García Barrio N, Gradinger T, Griffier R, Hanauer DA, Holmes JH, Horki P, Huling KM, Issitt RW, Jouhet V, Keller MS, Kraska D, Liu M, Luo Y, Lynch KE, Malovini A, Mandl KD, Mao C, Maram A, Matheny ME, Maulhardt T, Mazzitelli M, Milano M, Moore JH, Morris JS, Morris M, Mowery DL, Naughton TP, Ngiam KY, Norman JB, Patel LP, Pedrera Jimenez M, Ramoni RB, Schriver ER, Scudeller L, Sebire NJ, Serrano Balazote P, Spiridou A, Tan AL, Tan BWL, Tibollo V, Torti C, Trecarichi EM, Vitacca M, Zambelli A, Zucco C, Kohane IS, Cai T, Brat GA: International Comparisons of Harmonized Laboratory Value Trajectories to Predict Severe COVID-19: Leveraging the 4CE Collaborative Across 342 Hospitals and 6 Countries: A Retrospective Cohort Study. Journal of Medical Internet Research 23(10): e31400, Nov 2021.
309 Klann JG, Weber GM, Estiri H, Moal B, Avillach P, Hong C, Castro V, Maulhardt T, Tan ALM, Geva A, Beaulieu-Jones BK, Malovini A, South AM, Visweswaran S, Omenn GS, Ngiam KY, Mandl KD, Boeker M, Olson KL, Mowery DL, Morris M, Follett RW, Hanauer DA, Bellazzi R, Moore JH, Loh NW, Bell DS, Wagholikar KB, Chiovato L, Tibollo V, Rieg S, Li ALLJ, Jouhet V, Schriver E, Samayamuthu MJ, Xia Z, Hutch M, Luo Y; Consortium for Clinical Characterization of COVID-19 by EHR (4CE) (CONSORTIA AUTHOR), Kohane IS, Brat GA, Murphy SN: Validation of an Internationally Derived Patient Severity Phenotype to Support COVID-19 Analytics from Electronic Health Record Data. J Am Med Inform Assoc 28(7): 1411-1420, Jul 2021.
4b1 Brat GA, Weber GM, Gehlenborg N, Avillach P, Palmer NP, Chiovato L, Cimino J, Waitman LR, Omenn GS, Malovini A, Moore JH, Beaulieu-Jones BK, Tibollo V, Murphy SN, Yi SL, Keller MS, Bellazzi R, Hanauer DA, Serret-Larmande A, Gutierrez-Sacristan A, Holmes JJ, Bell DS, Mandl KD, Follett RW, Klann JG, Murad DA, Scudeller L, Bucalo M, Kirchoff K, Craig J, Obeid J, Jouhet V, Griffier R, Cossin S, Moal B, Patel LP, Bellasi A, Prokosch HU, Kraska D, Sliz P, Tan ALM, Ngiam KY, Zambelli A, Mowery DL, Schiver E, Devkota B, Bradford RL, Daniar M, Daniel C, Benoit V, Bey R, Paris N, Serre P, Orlova N, Dubiel J, Hilka M, Jannot AS, Breant S, Leblanc J, Griffon N, Burgun A, Bernaux M, Sandrin A, Salamanca E, Cormont S, Ganslandt T, Gradinger T, Champ J, Boeker M, Martel P, Esteve L, Gramfort A, Grisel O, Leprovost D, Moreau T, Varoquaux G, Vie JJ, Wassermann D, Mensch A, Caucheteux C, Haverkamp C, Lemaitre G, Bosari S, Krantz ID, South A, Cai T, Kohane IS: International Electronic Health Record-derived COVID-19 Clinical Course Profiles: the 4CE Consortium. NPJ Digit Med 3: 109, Aug 2020 Notes: doi: 10.1038/s41746-020-00308-0.
12c Schriver E, Lieblich S, AlRabiah R, Mowery DL, Brown LA: Identifying Risk Factors for Suicidal Ideation across a Large Community Healthcare System. J Affect Disord 276: 1038-1045, Nov 2020 Notes: doi: 10.1016/j.jad.2020.07.047.
1cb Falcone M, Luo C, Chen Y, Birtwell D, Cheatle M, Duan R, Gabriel PE, He L, Ko EM, Lenz HJ, Mirkovic N, Mowery DL, Ochroch EA, Paulson EC, Schriver E, Schnoll RA, Bekelman JE, Lerman C: Risk of Persistent Opioid Use following Major Surgery in Matched Samples of Patients with and without Cancer. Cancer Epidemiol Biomarkers Prev 29(11): 2126-2133, Nov 2020 Notes: doi: 10.1158/1055-9965.
17e Anderson T, Madden E, Zhang S, Mowery D, Chapman WW, Keyhani S : Trends in Carotid Imaging in the VA Health System Following Choosing Wisely Recommendations: An Interrupted Time Series Analysis. Circulation: Cardiovascular Quality and Outcomes. Society for General Internal Medicine. Denver, CO 11: 192, 2018.
1b4 Mowery DL, Kawamoto K, Bradshaw R, Kohlmann W, Schiffman JD, Weir C, Borbolla D, Chapman WW, Del Fiol G: Determining Onset for Familial Breast and Colorectal Cancer from Family History Comments in the Electronic Health Record. AMIA Jt Summits Transl Sci Proc. Washington, DC 2019: 173-181, May 2019 Notes: AMIA Clinical Research Informatics Best Paper Award 2019.
122 Hong J, Davoudi A, Yu S, Mowery DL: Annotation and Extraction of Age and Temporally-related Events from Clinical Histories. BMC Med Inform Decis Mak 20(11 (suppl)): 338, Dec 2020 Notes: DOI:10.1186/s12911-020-01333-5.
146 Birtwell D, Williams H, Pyeritz R, Damrauer S, Mowery DL: Carnival: A Graph-Based Data Integration and Query Tool to Support Patient Cohort Generation for Clinical Research. Stud Health Technol Inform 264: 35-39, Aug 2019 Notes: doi: 10.3233/SHTI190178.
166 Conway M, Keyhani S, Christensen L, South BR, Vali M, Walter LC, Mowery DL, Abdelrahman S, Chapman WW: Moonstone: A Novel Natural Language Processing System for Inferring Social Risk from Clinical Narratives. J Biomed Semantics 10(1): 6, Apr 2019 Notes: doi: 10.1186/s13326-019-0198-0.
14f Conway M, Mowery DL, South BR, Stoddard GJ, Chapman WW, Patterson OV, Zhu SH: Documentation of ENDS Use in the Veterans Affairs Electronic Health Record (2008-2014). Am J Prev Med 56(3): 474-475, Mar 2019 Notes: doi: 10.1016/j.amepre.2018.10.019. PMID: 30777165.
137 Chapman AB, Mowery DL, Swords DS, Chapman WW, Bucher BT: Detecting Evidence of Intra-abdominal Surgical Site Infections from Radiology Reports Using Natural Language Processing. AMIA Annual Symp. San Francisco, CA 2017: 515-524, Apr 2018.
152 Hicks A, Miller M, Mowery DL, Stoeckert C: The Hypertension Ontology: Coordinating Clinical Data with Context-Sensitive Hypertension Criteria International Conference on Biomedical Ontology (ICBO 2019). Buffalo, NY 2019 Notes: Peer reviewed conference manuscript.
116 Wang J, Yu S, Davoudi A, Mowery DL: A Preliminary Characterization of Canonicalized and Non-Canonicalized Section Headers Across Variable Clinical Note Types. AMIA Annu Symp Proc Page: 1268-1276, Jan 2021.
142 Heilbrun ME, Chapman BE, Narasimhan E, Patel N, Mowery D: Feasibility of Natural Language Processing-Assisted Auditing of Critical Findings in Chest Radiology. J Am Coll Radiol 16(9 Pt B): 1299-1304, Sep 2019 Notes: doi: 10.1016/j.jacr.2019.05.038.
153 Estiri H, Strasser ZH, Brat GA, Semenov YR, The Consortium for Characterization of COVID-19 by EHR (4CE), Patel CJ, Murphy SN: Evolving Phenotypes of non-hospitalized Patients that Indicate Long COVID. BMC Medicine 19(1): 249, Sep 2021 Notes: *consortium authorship.
322 Bourgeois FT, Gutiérrez-Sacristán A, Keller MS, Liu M, Hong C, Bonzel CL, Tan ALM, Aronow BJ, Boeker M, Booth J, Cruz Rojo J, Devkota B, García Barrio N, Gehlenborg N, Geva A, Hanauer DA, Hutch MR, Issitt RW, Klann JG, Luo Y, Mandl KD, Mao C, Moal B, Moshal KL, Murphy SN, Neuraz A, Ngiam KY, Omenn GS, Patel LP, Jiménez MP, Sebire NJ, Balazote PS, Serret-Larmande A, South AM, Spiridou A, Taylor DM, Tippmann P, Visweswaran S, Weber GM, Kohane IS, Cai T, Avillach P; Consortium for Clinical Characterization of COVID-19 by EHR (4CE): International Analysis of Electronic Health Records of Children and Youth Hospitalized With COVID-19 Infection in 6 Countries. JAMA Network Open 4(6), Jun 2021 Notes: *consortium authorship.
11d Decker B, Schriver E, Fischbein K, Smith D, Moyer J, Mowery D, Litt B, Ellis C, Hill C: How Often Do Patients with a New Epilepsy Diagnosis Remain Untreated? American Epilepsy Society Dec 2021 Notes: Chicago, IL.
180 Lee NS, Asch EL, Luong T, Chivers C, Mowery D, Vandertuyn M, Sevinc C, Josephs M, Rosin R, Chiayachati KH: Supporting Population Health Programs using Chatbot Technology: Lessons Learned Developing and Integrating a Chatbot into Hypertension Program. Society of General Internal Medicine National Meeting 2021.
129 Shaw PA, Yang J, Ellenberg S, Schriver E, Mowery D, Bar KJ : Determinants of COVID-19 Hospital Outcomes in a Large Pennsylvania Health System Conference on Retroviruses & Opportunistic Infections (CROI), Virtual March 2021.
157 Hong J, Lo Y, Ritter AZ, Whitehouse CR, O’Conner M, Keim SK, McDonald M, Moore JH, Bowles KH, Mowery DL : Annotation and Extraction of Age and Temporally-Related Events from Clinical Histories International Conference on Intelligent Biology and Medicine (ICIBM) 2020.
1da Holmes JH, Beinlich J, Boland MR, Bowles KH, Chen Y, Cook TS, Demiris G, Draugelis M, Fluharty L, Gabriel PE, Grundmeier R, Hanson CW, Herman DS, Himes BE, Hubbard RA, Kahn CE Jr, Kim D, Koppel R, Long Q, Mirkovic N, Morris JS, Mowery DL, Ritchie MD, Urbanowicz R, Moore JH: Why Is the Electronic Health Record So Challenging for Research and Clinical Care? Methods Inf Med 60(1-02): 32-48, July 2021.
1fb Getzen E, Ungar L, Mowery D, Jiang Z, Long Q: Mining for Equitable Health: Assessing the Impact of Missing Data in Electronic Health Records. 15 International Conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2022). Kings College London, United Kingdom. Dec 2022 Notes: http://www.cmstatistics.org/RegistrationsV2/CMStatistics2022/viewSubmission.php?id=880&token=09rs149or8r17p0n2nss5s28526303q7.
281 Gutiérrez-Sacristán A, Serret-Larmande A, Hutch MR, Sáez C, Aronow BJ, Bhatnagar S, Bonzel CL, Cai T, Devkota B, Hanauer DA, Loh NHW, Luo Y, Moal B, Ahooyi TM, Njoroge WFM, Omenn GS, Sanchez-Pinto LN, South AM, Sperotto F, Tan ALM, Taylor DM, Verdy G, Visweswaran S, Xia Z, Zahner J, Avillach P, Bourgeois FT; Consortium for Clinical Characterization of COVID-19 by EHR (4CE): Hospitalizations Associated With Mental Health Conditions Among Adolescents in the US and France During the COVID-19 Pandemic. JAMA Netw Open 5(12), Dec 2022 Notes: *consortium authorship.
17b Dublin S, Albertson-Junkans L, Pavon J, Maciejewski M, Albers A, Hennessy S, Pham P, Willis A, Mowery DL, Hastings SN, Clark A, Zepel L, Thomas S, Bayliss EA: Defining Key Deprescribing Measures from Electronic Health Data: A Multisite Data Harmonization Project. J Am Geriatr Soc 73(2): 399-410, Nov 2024.
15b Sawyer AM, Mazzotti DR, Keenan BT, Schutte-Rodin S, Staley B, Schwab R, Maislin G, Kuna ST, Watach AJ, Bae C, Mowery DL, Saconi B, Shi J, Hwang D, Pack AI: Long-Term Positive Airway Pressure Usage Disparities in Black or Hispanic of any Race Adults with OSA. SLEEP Jun 2023.
169 King AJ, Angus DC, Cooper GF, Mowery DL, Seaman JB, Potter KM, Bukowski KA, Al-Khafaj A, Gunn SR, Kahn JM: A Voice-based Digital Assistant for Intelligent Prompting of Evidence-based Practices during ICU Rounds. J Biomed Inform 146(104483), Aug 2023 Notes: doi: 10.1016/j.jbi.2023.104483.
6f Mowery DL, Regli SH, McShane C, Duffy C, Schriver E, Urbanowicz R, 20 Atkins J, Douma C, McGreevey J c6 : Automatically Identifying Event Reports of Workplace Violence and Psychological Safety using Natural Language Processing AMIA Annual Symp. New Orleans, LA Nov 2023.
218 Zhang HG, Honerlaw JP, Maripuri M, Samayamuthu MJ, Beaulieu-Jones BR, Baig HS, L'Yi S, Ho YL, Morris M, Panickan VA, Wang X, Weber GM, Liao KP, Visweswaran S, Tan BWQ, Yuan W, Gehlenborg N, Muralidhar S, Ramoni RB; Consortium for Clinical Characterization of COVID-19 by EHR (4CE); Kohane IS, Xia Z, Cho K, Cai T, Brat GA .: Potential Pitfalls in the Use of Real-world Data for Studying Long COVID Nat Med 29(5): 1040-1043, Apr 2023 Notes: consortium authorship.
104 Kaviyarasu A, Mitchell OJL, Thomas S, Batugo A, Mowery DL, Abella BS: Identification Of In-hospital Cardiac Arrest Using Administrative Billing Codes. American Heart Association Nov 2023.
182 Dagliati A, Strasser ZH, Hossein Abad ZS, Klann JG, Wagholikar KB, Mesa R, Visweswaran S, et al.: Characterization of Long COVID Temporal Sub-phenotypes by Distributed Representation Learning from Electronic Health Record Data: a Cohort Study. eClinicalMedicine 64: 102210, Oct 2023 Notes: *consortium authorship.
193 Sperotto F, Gutiérrez-Sacristán A, Makwana S, Li X, Rofeberg VN, Cai T, Bourgeois, FT et al.: Clinical Phenotypes and Outcomes in Children with Multisystem Inflammatory Syndrome across SARS-CoV-2 Variant Eras: a Multinational Study from the 4CE Consortium. eClinicial Medicine 64: 102212, Oct 2023 Notes: *consortium authorship.
1dd Nguyen TPP, Dublin S, Albertson-Junkans L, Pavon JM, Maciejewski ML, Albers KB, Hennessy S, Willis AW, Mowery D, Hastings SN, Clark AG, Zepel L, Thomas S, Steinman M, Boyd C, Pieper LE, Bayliss E: Defining Key Deprescribing Measures from Electronic Health Data: Learnings from a Multisite Data Harmonization Project. International Conference on Pharmacoepidemiology Aug 2023 Notes: Halifax, Nova Scotia.
148 Kaviyarasu A, Vurgun U, Hwang S, Acevedo A, Abella BS, Mowery DL, Mitchell OJL: Leveraging Large Language Models to Optimize Clinical Text Analysis for In Hospital Cardiac Arrest Identification. Penn Medicine, Department of Medicine Research Day Jun 2024.
18d Tran JT, Webster J, Wolfe JR, Nathan JB, Mayinja L, Kautz M, Oquendo MA, Brown GK, Mandell D, Mowery D, Bauermeister JA, Brown LA: Experiences of Peer Mentoring Sexual and Gender Minority Emerging Adults who are at Risk for Suicide: Mixed Methods Study. JMIR Formative Research 9: e67814, Jan 2025 Notes: doi: 10.2196/67814.
199 Tan ALM, Gonçalves RS, Yuan W, Brat GA, Gentleman R, Kohane IS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE) : Implications of mappings between International Classification of Diseases clinical diagnosis codes and Human Phenotype Ontology terms. JAMIA Open 7(4): ooae118, Dec 2024 Notes: *consortia authorship.
10e Donnelly HK, Ashcraft LE, Romano JD, Daniels S, Mowery DL: Using Topic Modeling to Understand Implementation Science in the Biomedical Literature. AMIA Informatics Summit. Pittsburgh, PA Mar 2024.
16e Profka K, Wang A, Schriver E, Batugo A, Morgan A, Mowery D*, Bressman E*: Patient Interaction Phenotypes with an Automated Text Message-Based Program and Use of Acute Health Care Resources After Hospital Discharge. JMIR mHealth & uHealth 27: e72875, Jul 2025 Notes: *shared co-last authorship.
1a3 Lin T, Tang M, Bauermeister JA, Tran JT, Kautz M, Donnelly H, Webster J, Wolfe JR, Ben-Nathan J, Arcamano A, Oquendo MA, Brown G, Mowery D, Brown LA: Moderating Effects of Coping Strategies on the Prospective Relationships Between Stigma and Depression Among Emerging Adult Sexual Minorities. Journal of Affective Disorders 390: 119843, Dec 2025.
160 Donnelly HK, Brown GK, Green KL, Labouliere C, Mowery DL: Development of a Large Language Model (LLM)-based Auto-scoring Tool to Evaluate Safety Plan Quality in Outpatient Mental Health Settings. 2025 IASR/AFSP International Summit on Suicide Research Nov 2025 Notes: Boston, MA.
13e Profka K, Wang A, Mowery D, Schriver E, Morgan A, Bressman E: Patient Interaction Phenotypes with a Post-Discharge Text Messaging Service and their Association with Hospital Revisits Journal of Hospital Medicine - SHM Converge Meeting Apr 2025.
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Selected Publications
118 Shaw PA, Yang JB, Mowery DL, Schriver ER, Mahoney K, Bar KJ, Ellenberg SS: Determinants of Hospital Outcomes for COVID-19 Infections in a Large Pennsylvania Health System. PLoS One 17(5): e0268528, May 2022.1a1 Ketchem CJ, Vurgun U, Wang A, Thomas S, Batugo A, Faul GW, Lynch KL, Dellon ES, Mowery DL*, Lewis JD*: Diagnostic Performance of ICD Codes for Eosinophilic Gastrointestinal Diseases Varies by Reference Standard Definition and Disease Subtype. American College of Gastroenterology Conference Oct 2025 Notes: accepted. *shared co-last authorship.
186 Ketchem CJ, Vurgun U, Wang A, Thomas S, Batugo A, Faul GW, Lynch KL, Dellon ES, Mowery DL*, Lewis JD*: Large Language Models Combined with a Single Diagnostic Code Improve Identification of Eosinophilic Esophagitis. American College of Gastroenterology Conference Oct 2025 Notes: accepted. *shared co-last authorship.
2ad Bergquist T, Loomba J, Pfaff E, Xia F, Zhao Z, Zhu Y, Mitchell E, Bhattacharya B, Shetty G, Munia T, Delong G, Tariq A, Butzin-Dozier Z, Ji Y, Li H, Coyle J, Shi S, Philips RV, Mertens A, Pirracchio R, van der Laan M, Colford JM Jr, Hubbard A, Gao J, Chen G, Velingker N, Li Z, Wu Y, Stein A, Huang J, Dai Z, Long Q, Naik M, Holmes J, Mowery D, Wong E, Parekh R, Getzen E, Hightower J, Blase J; Long COVID Computational Challenge Participants; N3C Consortium: Crowd-sourced Machine Learning Prediction of Long COVID using Data from the National COVID Cohort Collaborative. EBioMedicine 108(7): 105333, Sept 2024.
181 Becker M, Hwang S, Schriver E, Douma C, Duffy C, Atkins J, McShane C, Lubken J, Hanish A, McGreevey JD, Regli S, Mowery DL: Automatically Identifying Event Reports of Workplace Violence and Communication Failures using Large Language Models. AMIA Jt Summits Transl Sci Proc. Pittsburgh, PA Page: 74-83, Jun 2025.
1bf Vurcan U, Hwang S, Thomas S, Batugo A, Acevedo A, Kaviyarasu A, Abella BS, OJL Mitchell, Mowery DL: Reliability in AI-Assisted Critical Care: Assessing Large Language Model Robustness and Instruction Following for Cardiac Arrest Identification. NeurIPS 2024, the Thirty-Eighth Annual Conference on Neural Information Processing Systems Workshop. Vancouver, Canada Dec 2024.
1ee Das S, Ge Y, Guo y, Rajwawl S, Hairston JM, Powell J, Walker D, Peddireddy S, Lakamana S, Bozkurt S, Reyna M, Sameni R, Xiao Y, Kkim S, Chandler R, Hernandez N, Mowery D, Wightman R, Love J, Spadaro A, Perrone J, Sarker A: Two-layer Retrieval Augmented Generation Framework for Low-resource Medical Question-Answering: Proof of Concept using Reddit Data. J Med Internet Res 27: e66220, Jan 2025 Notes: doi: 10.2196/66220.
1af Li C, Mowery DL, Ma X, Yang R, Vurgun U, Hwang S, Donnelly HK, Bandhey H, Akhtar Z, Senathirajah Y, Sadhu EM, Getzen E, Freda PJ, Long Q, Becich MJ: Realizing the Potential of Social Determinants Data: A Scoping Review of Approaches for Screening, Linkage, Extraction, Analysis and Interventions. Journal of Clinical and Translational Science 8(1), Oct 2024.
201 Urbanowicz RJ, Bandhey H, Keenan BT, Maislin G, Hwang S, Mowery DL, Lynch SM, Mazzotti DR, Han F, Li QY, Penzel T, Tufik S, Bittencourt L, Gislason T, de Chazal P, Singh B, McArdle N, Chen N-H, Pack A, Schwab RJ, Cistulli PA, Magalang UJ: STREAMLINE: An Automated Machine Learning Pipeline for Biomedicine Applied to Examine the Utility of Photography-based Phenotypes for OSA Prediction Across International Sleep Centers. arXiv Dec 2023.
186 Wolk CB, Green KL, Cidav Z, Mowery DL, Gallop R, Reilly M, Stanley B, Mandell DS, Oquendo MA, Jager-Hyman S: Safety Planning Intervention and Follow-up: A Telehealth Service Model for Suicidal Individuals in Emergency Department Settings: Study Design and Protocol. Contemporary Clinical Trials 140: 107492, Mar 2024.
36e Hutch MR, Son J, Le TT, Hong C, Wang X, Shakeri Z, Abad H, Morris M, Gutiérrez-Sacristán A, Klann JG, Spiridou A, Batugo A, Bellazzi R, Benoit V, Bonzel C-L, Bryant WA, Chiudinelli L, Cho K, Das P, González T, Hanauer DA, Henderson DW, Ho Y-L, Loh NHW, Makoudjou A, Makwana S, Malovini A, Moal B, Mowery DL, Neuraz A, Samayamuthu MJ, Vidorreta FJS, Schriver ER, Schubert P, Talbert J, Tan ALM, Tan BWL, Tan BWQ, Tibollo V, Tippmann P, Verdy G, Yuan W, Avillach P, Gehlenborg N, Omenn GS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Visweswaran S, Cai T, Luo Y, Xia Z: Neurological Diagnoses in Hospitalized COVID-19 Patients Associated with Adverse Outcomes: a Multinational Cohort Study. PLOS Digital Health 3(4): e0000484, Apr 2024 Notes: doi: 10.1371/journal.pdig.0000484.
120 Wang A, Fulton R, Hwang S, Margolis D, Mowery DL: Patient Phenotyping for Atopic Dermatitis with Transformers and Machine Learning. JMIR Formative Research 8: e52200, Jan 2024 Notes: doi: 10.1101/2023.08.25.2329463.
150 Poulsen M, Freda PJ, Troiani V, Mowery DL: Developing a Framework to Infer Opioid Use Disorder Severity from Clinical Notes to Inform Natural Language Processing Methods: A Characterization Study. JMIR Mental Health 11: e53366, Jan 2024 Notes: doi: 10.2196/53366.
1bd Brown L, Webster JL, Tran JT, Wolfe JR, Golinkoff J, Patel E, Arcomano AC, Ben Nathan JB, Azat O'Connor AA, Zhu Y, Oquendo M, Brown G, Mandell D, Mowery D, Bauermeister J: Suicide Prevention Intervention for Vulnerable Emerging Adult Sexual Minorities: A Pilot Hybrid Effectiveness Randomized Control Trial. JMIR Res Protoc 12: e48177, Sept 2023 Notes: doi: 10.2196/48177.
1ce Getzen E, Tan A, Brat G, Omenn G, Strasser Z, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), *Long Q, *Holmes J, *Mowery D: Leveraging Informative Missing Data to Learn about Acute Respiratory Distress Syndrome and Mortality in Long-term Hospitalized COVID-19 Patients throughout the Years of the Pandemic. AMIA Annual Symp. New Orleans, LA Page: 942-950, Jan 2024.
118 Velingker N, Li Z, Wu Y, Stein A, Huang J, Dai Z, Long Q, Naik M, Holmes J, Mowery D, Wong E: A Robust and Adaptive Model for Long COVID Detection. NIH N3C Long COVID Challenge 2023 Notes: Honorable mention.
15d Yang A, Kamien S, Davoudi A, Hwang S, Gandhi M, Urbanowicz R, Mowery D: Relation Detection to Identify Stroke Assertions from Clinical Notes using Natural Language Processing. Stud Health Technol Inform 310: 619-623, Jan 2024 Notes: Sydney, Australia; doi: 10.3233/SHTI231039.
15a Hwang S, Reddy S, Wainwright K, Schriver E, Cappola A, Mowery D: Using Natural Language Processing to Extract and Classify Symptoms among Patients with Thyroid Dysfunction. Stud Health Technol Inform 310: 614-618, Jan 2024 Notes: MedInfo 2023 Conference. Sydney, Australia.
114 King AJ, Potter K, Seaman JB, Chiyka EA, Hileman BA, Cooper GF, Mowery DL, Angus DC, Kahn JM: Measuring Performance on the ABCDEF Bundle during Interprofessional Rounds: Interrater Reliability of a Nurse-based Assessment Tool 16 Am J Crit Care 2e 32(2): 92–99, Mar 2023.
122 King AJ, Kahn JM, Brant EB, Cooper GF, Mowery DL: Initial Development of an Automated Platform for Assessing Trainee Performance on Case Presentations. American Thoracic Society (ATS) Scholar 3(4): 548-560, Sept 2022.
145 Lee NS, Luong T, Rosin R, Asch DA, Sevinc C, Balachandran M, Josephs M, Rusk MH, McHenry NL, Asch E, *Mowery DL, *Chaiyachati: Developing a Chatbot-Clinician Model for Hypertension Management. NEJM Catalyst Innovations in Care Delivery 3(11), Oct 2022.
423 Hong C, Zhang HG, L'Yi S, Weber G, Avillach P, Tan BWQ, Gutiérrez-Sacristán A, Bonzel CL, Palmer NP, Malovini A, Tibollo V, Luo Y, Hutch MR, Liu M, Bourgeois F, Bellazzi R, Chiovato L, Sanz Vidorreta FJ, Le TT, Wang X, Yuan W, Neuraz A, Benoit V, Moal B, Morris M, Hanauer DA, Maidlow S, Wagholikar K, Murphy S, Estiri H, Makoudjou A, Tippmann P, Klann J, Follett RW, Gehlenborg N, Omenn GS, Xia Z, Dagliati A, Visweswaran S, Patel LP, Mowery DL, Schriver ER, Samayamuthu MJ, Kavuluru R, Lozano-Zahonero S, Zöller D, Tan ALM, Tan BWL, Ngiam KY, Holmes JH, Schubert P, Cho K, Ho YL, Beaulieu-Jones BK, Pedrera-Jiménez M, García-Barrio N, Serrano-Balazote P, Kohane I; Consortium for Clinical Characterization of COVID-19 by EHR (4CE), South A, Brat GA, Cai T: Changes in Laboratory Value Improvement and Mortality Rates over the Course of the Pandemic: an International Retrospective Cohort Study of Hospitalised Patients Infected with SARS-CoV-2. BMJ Open 12(6): e057725, Jun 2022.
17e King AJ, Mowery DL, Cooper GF, Kahn JM : Natural Language Processing to Computationally Generate Feedback on the Quality of Trainees' Oral Case Presentations in the Intensive Care Unit. American Thoracic Society Annual Meeting Page: A2449-A2449, May 2022 Notes: B23. THE ICU GRAB BAG: A SESSION OF MUST HAVES.
121 Kennedy EE, Davoudi A, Hwang S, Freda P, Urbanowicz R, Bowles K, Mowery DL: Identifying Barriers to Post-Acute Care Referral and Characterizing Negative Patient Preferences Among Hospitalized Older Adults Using Natural Language Processing 2 2 de AMIA Annual Symp. Washington, DC Page: 606-615, Apr 2023 Notes: Washington DC. Nov 5-9, 2022. **AMIA Nursing Informatics Work Group Student Paper Award. **Ann Wolbert Burgess Endowed Student Award.
39c Tan BWL, Tan B, Tan ALM, Schriver ER, Gutiérrez-Sacristán A, Das P, Yuan W, Hutch MR, García-Barrio N, Jimenez MP, Abu-el-rub N, Morris M, Moal B, Schubert P, Cho K, Ho Y-L, Patel LP, Dagliati A, Neuraz A, Klann JG, South AM, Visweswaran S, Hanauer DA, Maidlow SE, Liu M, Mowery DL, Makoudjou A, Tippmann P, Zöller D, Brat GA, Luo Y, Avillach P, Bellazzi R, Chiovato L, Malovini A, Tibollo V, Samayamuthu MJ, Balazote PS, Xia Z, Loh NHW, Chiudinelli L, Bonzel C-L, Hong C, Zhang HG, Weber GM, Kohane IS, Cai T, Omenn GS, Holmes JH; Ngiam KY, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE): Long-term Kidney Function Recovery and Mortality after COVID-19-associated Acute Kidney Injury: an International Multi-centre Observational Cohort Study. eClinicalMedicine 55: 101724, Nov 2022 Notes: doi: 10.1016/j.eclinm.2022.101724.
195 Poulsen MN, Freda PJ, Troiani V, Davoudi A, Mowery DL: Classifying Characteristics of Opioid Use Disorder From Hospital Discharge Summaries Using Natural Language Processing. Front Public Health 10: 850619, May 2022 Notes: Special Issue: Computational Methods in Substance Use and Addiction Research; doi: 10.3389/fpubh.2022.850619.
24a Klann JG, Strasser ZH, Hutch MR, Kennedy CJ, Marwaha JS, Morris M, Samayamuthu MJ, Pfaff AC, Estiri H, South AM, Weber GM, Yuan W, Avillach P, Wagholikar KB, Luo Y; Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Omenn GS, Visweswaran S, Holmes JH, Xia Z, Brat GA, Murphy SN: Distinguishing Admissions Specifically for COVID-19 From Incidental SARS-CoV-2 Admissions: National Retrospective Electronic Health Record Study. J Med Internet Res 24(5): e37931, May 2022 Notes: consortium authorship.
340 Moal B, Orieux A, Ferté T, Neuraz A, Brat GA, Avillach P, Bonel C-L, Cai T, Cho K, Cossin S, Griffier R, Hanauer DA, Haverkamp C, Ho Y-L, Hong C, Hutch MR, Klann JG, Le TT, Loh NHW, Luo Y, Makoudjou A, Morris M, Mowery DL, Olsen KL, Patel LP, Samayamuthu MJ, Vidorreta FJS, Schriver ER, Schubert P, Verdy G, Visweswaran S, Wang X, Weber GM, Xia Z, Yuan W, Zhang HG, Zöeller D, Kohane IS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Boyer A, Jouhet V: Acute Respiratory Distress Syndrome after SARS-CoV-2 Infection on Young Adult Population: International Observational Federated Study based on Electronic Health Records through the 4CE Consortium ARDS after SARS-CoV-2 Infection on Young Adult. Plos One 18(1): e0266985, Jan 2022.
314 Tan ALM, Getzen E, Hutch MR, Strasser ZH, Gutiérrez-Sacristán A, Le TT, Dagliati A, Morris M, Hanauer DA, Moal B, Bonzel C-L, Yuan W, Chiudinelli L, Das P, Zhang HG, Aronow BJ, Avilach P, Brat GA, Cai T, Hong C, La Cava WG, Loh NHW, Luo Y, Murphy SN, Ngiam KY, Omenn GS, Patel LP, Samayamuthu MK, Schriver ER, Anad ZSH, Tan BWL, Tan BWQ, Visweswaran S, Wang X, Weber GM, Xia Z, Verdy B, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Long Q*, Mowery DL*, Holmes J*: Informative Missingness: What Can We Learn from Patterns in Missing Laboratory Data in the Electronic Health Record? J Biomed Inform 139: 104306, Mar 2023 Notes: *shared co-senior authorship; doi: 10.1016/j.jbi.2023.104306.
31c Hutch MR, Son J, Le TT, Hong C, Wang X, Shakeri H, Abad Z, Morris M, Gutiérrez-Sacristán A, Klann JG, Spiridou A, Bellazzi R, Benoit V, Bonzel C-L, Bryant WA, Cho K, Das P, Hanauer DA, Henderson DW, Ho Y-L, Loh NHW, Makoudjou A, Malovini A, Moal B, Mowery DL, Samayamuthu MJ, Sanz Vidorreta FJ, Schriver ER, Schubert P, Talbert J, Tan ALM, Tan BWL, Tan BWQ, Tibollo V, Yuan W, Avillach P, Gehlenborg N, Omenn GS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Visweswaran S, Cai T, Luo Y, Xia Z: Neurological Diagnoses in Hospitalized COVID-19 Patients Associated With Adverse Outcomes: A Multinational Cohort Study. PLOS Digit Health 3(4): e0000484, Apr 2024 Notes: preprint with the Lancet 2022.
11b Getzen E, Ungar L, Mowery D, Jiang X, Long Q: Mining for Equitable Health: Assessing the Impact of Missing Data in Electronic Health Records. J Biomed Inform 139, Mar 2023 Notes: doi: 10.1016/j.jbi.2022.104269.
3e8 Brat G, Weber G, Hong C, Palmer N, Avillach P, Murphy S, Gutiérrez-Sacristán A, Xia Z, Serret-Larmande A, Neuraz A, Omenn G, Visweswaran S, Klann J, South A, Loh NHW, Cannataro M, Beaulieu-Jones B, Bellazzi R, Agapito G, Alessiani M, Aronow B, Bell D, Benoit V, Bourgeois F, Chiovato L, Dagliati A, DuVall S, García N, Hanauer D, Holmes J, Issitt R, Keller M, Liu M, Luo Y, Malovini A, Mandl K, Mao C, Moore J, Morris J, Morris M, Mowery D, Ngiam KY, Patel L, Pedrera M, Schriver E, L'Yi S, Bonzel C-L, Cho K, Ho Y-L, Lynch K, Maidlow S, Matheny M, Ramoni R, Serrano-Balazote P, Schubert P, Spiridou A, Tan A, Tan B, Tibollo V, Torti C, Trecarichi E, Wang X, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Kohane I, and Cai T: International Comparisons of Laboratory Values from the 4CE Collaborative to Predict COVID-19 Mortality. NPJ Digit Med 5(1), Jun 2022 Notes: doi: 10.1038/s41746-022-00601-0.
3d5 Wang X, Zhang HG, Xiong X, Hong C, Weber GM, Brat GA, Bonzel C-L, Luo Y, Duan R, Palmer NP, Hutch MR, Gutiérrez-Sacristán A, Bellazzi R, Chiovato L, Cho K, Dagliati A, Estiri H, García-Barrio N, Griffier R, Hanauer DA, Ho Y-L, Holmes JH, Keller MS, Klann JG, L’Yi S, Lozano-Zahonero S, Maidlow SE, Makoudjou A, Malovini A, Moal B, Moore JH, Morris M, Mowery DL, Murphy SN, Neuraz A, Ngiam KY, Omenn GS, Patel LP, Pedrera-Jiménez M, Prunotto A, Samayamuthu MJ, Vidorreta FJS, Schriver ER, Schubert P, Serrano-Balazote P, South AM, Tan ALM, Tan BWL, Tibollo V, Tippmann P, Visweswaran S, Xia Z, Yuan W, Zöller D, Kohane IS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE), Avillach P, Guo Z, Cai T: SurvMaximin: Robust Federated Approach to Transporting Survival Risk Prediction Models. J Biomed Inform 134: 104176, Oct 2022 Notes: doi: 10.1016/j.jbi.2022.104176. Epub 2022 Aug 23.
1c9 Hwang S, Urbanowicz, Lynch S, Vernon T, Bresz K, Giraldo C, Kennedy E, Leabhart M, Bleacher T, Ripchinski M, *Mowery DL, *Oyer R: Towards Predicting 30-Day Readmission among Oncology Patients: Identifying Timely and Actionable Risk Factors. JCO Clinical Cancer Informatics 7: e2200097, Feb 2023 Notes: *shared co-senior authorship; accepted for publication; doi: 10.1200/CCI.22.00097.
19e Davoudi A, Lee N, Luong T, Delaney T, Asch E, Chaiyachati K*, Mowery D*: Identifying Medication-related Intents from a Bidirectional Text Messaging Platform for Hypertension Management: An Unsupervised Learning Approach. J Med Internet Res 24(6), Jun 2022 Notes: *shared co-senior authorship; **shared co-last authorship; doi: 10.2196/36151.
18f Davoudi A, Lee NS, Chivers C, Delaney T, Asch EL, Reitz C, Mehta SJ, Chaiyachati KH, Mowery DL: Patient Interaction Phenotypes With an Automated Remote Hypertension Monitoring Program and Their Association With Blood Pressure Control: Observational Study. J Med Internet Res 22(12): e22493, Dec 2020 Notes: doi: 10.2196/22493.
155 Davoudi A, Yu S, Doucette A, Gabriel P, Miller M, Williams H, Desai H, Le A, Stoeckert C, Maxwell K, Mowery D: Classifying Progression Status Statements from Radiology Exams among Non-Small Cell Lung Cancer Patients using Natural Language Processing. medRxiv Nov 2021.
1a7 Davoudi A, Tissot H, Doucette A, Gabriel PE, Parikh R, *Mowery DL, *Miranda S: Using Natural Language Processing to Classify Serious Illness Communication in Oncology. AMIA Jt Summits Transl Sci Proc (AMIA Informatics Summit. Washington, DC) accepted for conference; available on medRxiv, Page: 168–177, May 2022 Notes: *shared co-last authorship.
13b Cappola AR, Schriver ER, Mowery DL, Wollack C, Ives CT, Gonzales R, Cappella JN: Effect of Targeted Messaging on Return to In-Person Visits During the COVID-19 Pandemic: A Randomized Clinical Trial. JAMA Network Open 4(6): e2115211, Jun 2021.
19e Wang L, Desai H, Verma SS, Le A, Hausler R, Verma A, Judy R, Doucette A, Gabriel PE, Nathanson KL, Damrauer S, Mowery DL, Ritchie MD, Kember RL, Maxwell KN: Performance of Polygenic Risk Scores for Cancer Prediction in a Racially Diverse Academic Biobank. Genetics in Medicine 24(3): 601-609, Mar 2021 Notes: Originally published in medRxiv.
149 Yu S, Le A, Feld E, Schriver E, Gabriel P, Doucette A, Narayan V, Feldman M, Schwartz LE, Maxwell K, Mowery D: A Natural Language Processing-Assisted Extraction System for Gleason Scores: Development and Usability Study. JMIR Cancer 7(2): e27970, Jul 2021.
141 Boland MR, Liu J, Balocchi C, Meeker JR, Bai R, Mellis I, Mowery D, Herman D: A Method to Link Neighborhood-Level Covariates to COVID-19 Infection Patterns in Philadelphia Using Spatial Regression. AMIA Informatics Summit Page: 545–554, Mar 2021.
149 Parikh S, Davoudi A, Yu S, Giraldo C, Schriver E, Mowery D: Lexicon Development for COVID-19-related Concepts Using Open-source Word Embedding Sources: An Intrinsic and Extrinsic Evaluation. JMIR Med Inform 9(2): e21679, Feb 2021 Notes: doi: 10.2196/21679.
1e9 Le TT, Gutiérrez-Sacristán A, Son J, Hong C, South AM, Beaulieu-Jones BK, Loh NHW, Luo Y, Morris M, Ngiam KY, Patel LP, Samayamuthu MJ, Schriver E, Tan AL, Moore J, Cai T, Omenn GS, Avillach P, Kohane IS, Visweswaran S*, Mowery DL*, Xia Z*: Multinational Prevalence of Neurological Phenotypes in Patients Hospitalized with COVID-19. Scientific Reports 11(1): 20238, Oct 2021 Notes: Originally published in medRxiv.
14a Anderson TS, Leonard S, Zhang AJ, Madden E, Mowery D, Chapman WW, Keyhani S: Trends in Low-Value Carotid Imaging in the Veterans Health Administration From 2007 to 2016. JAMA Netw Open 3(9): e2015250, Sep 2020 Notes: doi: 10.1001/jamanetworkopen.2020.15250.
144 Freedman H, Williams H, Birtwell D, Miller M, Mowery D, Stoeckert C: A Novel Tool for Standardizing Clinical Data in a Semantic Common Data Model. Journal of Biomedical Informatics: X 8: 100086, Dec 2020 Notes: Epub: doi: 10.1016/j.yjbinx.2020.100086.
103 Harris JR, Hatch R, Vallabhajosyula P, Lo Y, Mowery D, Patel N: AM vs. PM Administration of Warfarin following Cardiac Surgery. The Journal of Pharmacy Technology 37(2): 89-94, Apr 2021.
19c Keyhani S, Cheng EM, Hoggatt KJ, Austin PC, Madden E, Hebert PL, Halm EA, Naseri A, Johanning JM, Mowery D, Chapman WW, Bravata DM: Comparative Effectiveness of Carotid Endarterectomy vs Initial Medical Therapy in Patients With Asymptomatic Carotid Stenosis. JAMA Neurol 77(9): 1110-1121, Sep 2020 Notes: doi: 10.1001/jamaneurol.2020.2784.
189 Moore JH, Barnett I, Boland MR, Chen Y, Demiris G, Gonzalez-Hernandez G, Herman DS, Himes BE, Hubbard RA, Kim D, Morris JS, Mowery DL, Ritchie MD, Shen L, Urbanowicz R, Holmes JH: Ideas for How Informaticians Can Get Involved with COVID-19 Research. BioData Mining 13: 3, May 2020 Notes: doi: 10.1186/s13040-020-00213-y.
519 Weber GM, Hong C, Palmer NP, Avillach P, Murphy SN, Gutiérrez-Sacristán A, Xia Z, Serret-Larmande A, Neuraz A, Omenn GS, Visweswaran S, Klann JG, South AM, Loh NHW, Cannataro M, Beaulieu-Jones BK, Bellazzi R, Agapito G, Alessiani M, Aronow BJ, Bell DS, Bellasi A, Benoit V, Beraghi M, Boeker M, Booth J, Bosari S, Bourgeois FT, Brown NW, Bucalo M, Chiovato L, Chiudinelli L, Dagliati A, Devkota B, DuVall SL, Follett RW, Ganslandt T, García Barrio N, Gradinger T, Griffier R, Hanauer DA, Holmes JH, Horki P, Huling KM, Issitt RW, Jouhet V, Keller MS, Kraska D, Liu M, Luo Y, Lynch KE, Malovini A, Mandl KD, Mao C, Maram A, Matheny ME, Maulhardt T, Mazzitelli M, Milano M, Moore JH, Morris JS, Morris M, Mowery DL, Naughton TP, Ngiam KY, Norman JB, Patel LP, Pedrera Jimenez M, Ramoni RB, Schriver ER, Scudeller L, Sebire NJ, Serrano Balazote P, Spiridou A, Tan AL, Tan BWL, Tibollo V, Torti C, Trecarichi EM, Vitacca M, Zambelli A, Zucco C, Kohane IS, Cai T, Brat GA: International Comparisons of Harmonized Laboratory Value Trajectories to Predict Severe COVID-19: Leveraging the 4CE Collaborative Across 342 Hospitals and 6 Countries: A Retrospective Cohort Study. Journal of Medical Internet Research 23(10): e31400, Nov 2021.
309 Klann JG, Weber GM, Estiri H, Moal B, Avillach P, Hong C, Castro V, Maulhardt T, Tan ALM, Geva A, Beaulieu-Jones BK, Malovini A, South AM, Visweswaran S, Omenn GS, Ngiam KY, Mandl KD, Boeker M, Olson KL, Mowery DL, Morris M, Follett RW, Hanauer DA, Bellazzi R, Moore JH, Loh NW, Bell DS, Wagholikar KB, Chiovato L, Tibollo V, Rieg S, Li ALLJ, Jouhet V, Schriver E, Samayamuthu MJ, Xia Z, Hutch M, Luo Y; Consortium for Clinical Characterization of COVID-19 by EHR (4CE) (CONSORTIA AUTHOR), Kohane IS, Brat GA, Murphy SN: Validation of an Internationally Derived Patient Severity Phenotype to Support COVID-19 Analytics from Electronic Health Record Data. J Am Med Inform Assoc 28(7): 1411-1420, Jul 2021.
4b1 Brat GA, Weber GM, Gehlenborg N, Avillach P, Palmer NP, Chiovato L, Cimino J, Waitman LR, Omenn GS, Malovini A, Moore JH, Beaulieu-Jones BK, Tibollo V, Murphy SN, Yi SL, Keller MS, Bellazzi R, Hanauer DA, Serret-Larmande A, Gutierrez-Sacristan A, Holmes JJ, Bell DS, Mandl KD, Follett RW, Klann JG, Murad DA, Scudeller L, Bucalo M, Kirchoff K, Craig J, Obeid J, Jouhet V, Griffier R, Cossin S, Moal B, Patel LP, Bellasi A, Prokosch HU, Kraska D, Sliz P, Tan ALM, Ngiam KY, Zambelli A, Mowery DL, Schiver E, Devkota B, Bradford RL, Daniar M, Daniel C, Benoit V, Bey R, Paris N, Serre P, Orlova N, Dubiel J, Hilka M, Jannot AS, Breant S, Leblanc J, Griffon N, Burgun A, Bernaux M, Sandrin A, Salamanca E, Cormont S, Ganslandt T, Gradinger T, Champ J, Boeker M, Martel P, Esteve L, Gramfort A, Grisel O, Leprovost D, Moreau T, Varoquaux G, Vie JJ, Wassermann D, Mensch A, Caucheteux C, Haverkamp C, Lemaitre G, Bosari S, Krantz ID, South A, Cai T, Kohane IS: International Electronic Health Record-derived COVID-19 Clinical Course Profiles: the 4CE Consortium. NPJ Digit Med 3: 109, Aug 2020 Notes: doi: 10.1038/s41746-020-00308-0.
12c Schriver E, Lieblich S, AlRabiah R, Mowery DL, Brown LA: Identifying Risk Factors for Suicidal Ideation across a Large Community Healthcare System. J Affect Disord 276: 1038-1045, Nov 2020 Notes: doi: 10.1016/j.jad.2020.07.047.
1cb Falcone M, Luo C, Chen Y, Birtwell D, Cheatle M, Duan R, Gabriel PE, He L, Ko EM, Lenz HJ, Mirkovic N, Mowery DL, Ochroch EA, Paulson EC, Schriver E, Schnoll RA, Bekelman JE, Lerman C: Risk of Persistent Opioid Use following Major Surgery in Matched Samples of Patients with and without Cancer. Cancer Epidemiol Biomarkers Prev 29(11): 2126-2133, Nov 2020 Notes: doi: 10.1158/1055-9965.
17e Anderson T, Madden E, Zhang S, Mowery D, Chapman WW, Keyhani S : Trends in Carotid Imaging in the VA Health System Following Choosing Wisely Recommendations: An Interrupted Time Series Analysis. Circulation: Cardiovascular Quality and Outcomes. Society for General Internal Medicine. Denver, CO 11: 192, 2018.
1b4 Mowery DL, Kawamoto K, Bradshaw R, Kohlmann W, Schiffman JD, Weir C, Borbolla D, Chapman WW, Del Fiol G: Determining Onset for Familial Breast and Colorectal Cancer from Family History Comments in the Electronic Health Record. AMIA Jt Summits Transl Sci Proc. Washington, DC 2019: 173-181, May 2019 Notes: AMIA Clinical Research Informatics Best Paper Award 2019.
122 Hong J, Davoudi A, Yu S, Mowery DL: Annotation and Extraction of Age and Temporally-related Events from Clinical Histories. BMC Med Inform Decis Mak 20(11 (suppl)): 338, Dec 2020 Notes: DOI:10.1186/s12911-020-01333-5.
146 Birtwell D, Williams H, Pyeritz R, Damrauer S, Mowery DL: Carnival: A Graph-Based Data Integration and Query Tool to Support Patient Cohort Generation for Clinical Research. Stud Health Technol Inform 264: 35-39, Aug 2019 Notes: doi: 10.3233/SHTI190178.
166 Conway M, Keyhani S, Christensen L, South BR, Vali M, Walter LC, Mowery DL, Abdelrahman S, Chapman WW: Moonstone: A Novel Natural Language Processing System for Inferring Social Risk from Clinical Narratives. J Biomed Semantics 10(1): 6, Apr 2019 Notes: doi: 10.1186/s13326-019-0198-0.
14f Conway M, Mowery DL, South BR, Stoddard GJ, Chapman WW, Patterson OV, Zhu SH: Documentation of ENDS Use in the Veterans Affairs Electronic Health Record (2008-2014). Am J Prev Med 56(3): 474-475, Mar 2019 Notes: doi: 10.1016/j.amepre.2018.10.019. PMID: 30777165.
137 Chapman AB, Mowery DL, Swords DS, Chapman WW, Bucher BT: Detecting Evidence of Intra-abdominal Surgical Site Infections from Radiology Reports Using Natural Language Processing. AMIA Annual Symp. San Francisco, CA 2017: 515-524, Apr 2018.
152 Hicks A, Miller M, Mowery DL, Stoeckert C: The Hypertension Ontology: Coordinating Clinical Data with Context-Sensitive Hypertension Criteria International Conference on Biomedical Ontology (ICBO 2019). Buffalo, NY 2019 Notes: Peer reviewed conference manuscript.
116 Wang J, Yu S, Davoudi A, Mowery DL: A Preliminary Characterization of Canonicalized and Non-Canonicalized Section Headers Across Variable Clinical Note Types. AMIA Annu Symp Proc Page: 1268-1276, Jan 2021.
142 Heilbrun ME, Chapman BE, Narasimhan E, Patel N, Mowery D: Feasibility of Natural Language Processing-Assisted Auditing of Critical Findings in Chest Radiology. J Am Coll Radiol 16(9 Pt B): 1299-1304, Sep 2019 Notes: doi: 10.1016/j.jacr.2019.05.038.
153 Estiri H, Strasser ZH, Brat GA, Semenov YR, The Consortium for Characterization of COVID-19 by EHR (4CE), Patel CJ, Murphy SN: Evolving Phenotypes of non-hospitalized Patients that Indicate Long COVID. BMC Medicine 19(1): 249, Sep 2021 Notes: *consortium authorship.
322 Bourgeois FT, Gutiérrez-Sacristán A, Keller MS, Liu M, Hong C, Bonzel CL, Tan ALM, Aronow BJ, Boeker M, Booth J, Cruz Rojo J, Devkota B, García Barrio N, Gehlenborg N, Geva A, Hanauer DA, Hutch MR, Issitt RW, Klann JG, Luo Y, Mandl KD, Mao C, Moal B, Moshal KL, Murphy SN, Neuraz A, Ngiam KY, Omenn GS, Patel LP, Jiménez MP, Sebire NJ, Balazote PS, Serret-Larmande A, South AM, Spiridou A, Taylor DM, Tippmann P, Visweswaran S, Weber GM, Kohane IS, Cai T, Avillach P; Consortium for Clinical Characterization of COVID-19 by EHR (4CE): International Analysis of Electronic Health Records of Children and Youth Hospitalized With COVID-19 Infection in 6 Countries. JAMA Network Open 4(6), Jun 2021 Notes: *consortium authorship.
11d Decker B, Schriver E, Fischbein K, Smith D, Moyer J, Mowery D, Litt B, Ellis C, Hill C: How Often Do Patients with a New Epilepsy Diagnosis Remain Untreated? American Epilepsy Society Dec 2021 Notes: Chicago, IL.
180 Lee NS, Asch EL, Luong T, Chivers C, Mowery D, Vandertuyn M, Sevinc C, Josephs M, Rosin R, Chiayachati KH: Supporting Population Health Programs using Chatbot Technology: Lessons Learned Developing and Integrating a Chatbot into Hypertension Program. Society of General Internal Medicine National Meeting 2021.
129 Shaw PA, Yang J, Ellenberg S, Schriver E, Mowery D, Bar KJ : Determinants of COVID-19 Hospital Outcomes in a Large Pennsylvania Health System Conference on Retroviruses & Opportunistic Infections (CROI), Virtual March 2021.
157 Hong J, Lo Y, Ritter AZ, Whitehouse CR, O’Conner M, Keim SK, McDonald M, Moore JH, Bowles KH, Mowery DL : Annotation and Extraction of Age and Temporally-Related Events from Clinical Histories International Conference on Intelligent Biology and Medicine (ICIBM) 2020.
1da Holmes JH, Beinlich J, Boland MR, Bowles KH, Chen Y, Cook TS, Demiris G, Draugelis M, Fluharty L, Gabriel PE, Grundmeier R, Hanson CW, Herman DS, Himes BE, Hubbard RA, Kahn CE Jr, Kim D, Koppel R, Long Q, Mirkovic N, Morris JS, Mowery DL, Ritchie MD, Urbanowicz R, Moore JH: Why Is the Electronic Health Record So Challenging for Research and Clinical Care? Methods Inf Med 60(1-02): 32-48, July 2021.
1fb Getzen E, Ungar L, Mowery D, Jiang Z, Long Q: Mining for Equitable Health: Assessing the Impact of Missing Data in Electronic Health Records. 15 International Conference of the ERCIM WG on Computational and Methodological Statistics (CMStatistics 2022). Kings College London, United Kingdom. Dec 2022 Notes: http://www.cmstatistics.org/RegistrationsV2/CMStatistics2022/viewSubmission.php?id=880&token=09rs149or8r17p0n2nss5s28526303q7.
281 Gutiérrez-Sacristán A, Serret-Larmande A, Hutch MR, Sáez C, Aronow BJ, Bhatnagar S, Bonzel CL, Cai T, Devkota B, Hanauer DA, Loh NHW, Luo Y, Moal B, Ahooyi TM, Njoroge WFM, Omenn GS, Sanchez-Pinto LN, South AM, Sperotto F, Tan ALM, Taylor DM, Verdy G, Visweswaran S, Xia Z, Zahner J, Avillach P, Bourgeois FT; Consortium for Clinical Characterization of COVID-19 by EHR (4CE): Hospitalizations Associated With Mental Health Conditions Among Adolescents in the US and France During the COVID-19 Pandemic. JAMA Netw Open 5(12), Dec 2022 Notes: *consortium authorship.
17b Dublin S, Albertson-Junkans L, Pavon J, Maciejewski M, Albers A, Hennessy S, Pham P, Willis A, Mowery DL, Hastings SN, Clark A, Zepel L, Thomas S, Bayliss EA: Defining Key Deprescribing Measures from Electronic Health Data: A Multisite Data Harmonization Project. J Am Geriatr Soc 73(2): 399-410, Nov 2024.
15b Sawyer AM, Mazzotti DR, Keenan BT, Schutte-Rodin S, Staley B, Schwab R, Maislin G, Kuna ST, Watach AJ, Bae C, Mowery DL, Saconi B, Shi J, Hwang D, Pack AI: Long-Term Positive Airway Pressure Usage Disparities in Black or Hispanic of any Race Adults with OSA. SLEEP Jun 2023.
169 King AJ, Angus DC, Cooper GF, Mowery DL, Seaman JB, Potter KM, Bukowski KA, Al-Khafaj A, Gunn SR, Kahn JM: A Voice-based Digital Assistant for Intelligent Prompting of Evidence-based Practices during ICU Rounds. J Biomed Inform 146(104483), Aug 2023 Notes: doi: 10.1016/j.jbi.2023.104483.
6f Mowery DL, Regli SH, McShane C, Duffy C, Schriver E, Urbanowicz R, 20 Atkins J, Douma C, McGreevey J c6 : Automatically Identifying Event Reports of Workplace Violence and Psychological Safety using Natural Language Processing AMIA Annual Symp. New Orleans, LA Nov 2023.
218 Zhang HG, Honerlaw JP, Maripuri M, Samayamuthu MJ, Beaulieu-Jones BR, Baig HS, L'Yi S, Ho YL, Morris M, Panickan VA, Wang X, Weber GM, Liao KP, Visweswaran S, Tan BWQ, Yuan W, Gehlenborg N, Muralidhar S, Ramoni RB; Consortium for Clinical Characterization of COVID-19 by EHR (4CE); Kohane IS, Xia Z, Cho K, Cai T, Brat GA .: Potential Pitfalls in the Use of Real-world Data for Studying Long COVID Nat Med 29(5): 1040-1043, Apr 2023 Notes: consortium authorship.
104 Kaviyarasu A, Mitchell OJL, Thomas S, Batugo A, Mowery DL, Abella BS: Identification Of In-hospital Cardiac Arrest Using Administrative Billing Codes. American Heart Association Nov 2023.
182 Dagliati A, Strasser ZH, Hossein Abad ZS, Klann JG, Wagholikar KB, Mesa R, Visweswaran S, et al.: Characterization of Long COVID Temporal Sub-phenotypes by Distributed Representation Learning from Electronic Health Record Data: a Cohort Study. eClinicalMedicine 64: 102210, Oct 2023 Notes: *consortium authorship.
193 Sperotto F, Gutiérrez-Sacristán A, Makwana S, Li X, Rofeberg VN, Cai T, Bourgeois, FT et al.: Clinical Phenotypes and Outcomes in Children with Multisystem Inflammatory Syndrome across SARS-CoV-2 Variant Eras: a Multinational Study from the 4CE Consortium. eClinicial Medicine 64: 102212, Oct 2023 Notes: *consortium authorship.
1dd Nguyen TPP, Dublin S, Albertson-Junkans L, Pavon JM, Maciejewski ML, Albers KB, Hennessy S, Willis AW, Mowery D, Hastings SN, Clark AG, Zepel L, Thomas S, Steinman M, Boyd C, Pieper LE, Bayliss E: Defining Key Deprescribing Measures from Electronic Health Data: Learnings from a Multisite Data Harmonization Project. International Conference on Pharmacoepidemiology Aug 2023 Notes: Halifax, Nova Scotia.
148 Kaviyarasu A, Vurgun U, Hwang S, Acevedo A, Abella BS, Mowery DL, Mitchell OJL: Leveraging Large Language Models to Optimize Clinical Text Analysis for In Hospital Cardiac Arrest Identification. Penn Medicine, Department of Medicine Research Day Jun 2024.
18d Tran JT, Webster J, Wolfe JR, Nathan JB, Mayinja L, Kautz M, Oquendo MA, Brown GK, Mandell D, Mowery D, Bauermeister JA, Brown LA: Experiences of Peer Mentoring Sexual and Gender Minority Emerging Adults who are at Risk for Suicide: Mixed Methods Study. JMIR Formative Research 9: e67814, Jan 2025 Notes: doi: 10.2196/67814.
199 Tan ALM, Gonçalves RS, Yuan W, Brat GA, Gentleman R, Kohane IS, The Consortium for Clinical Characterization of COVID-19 by EHR (4CE) : Implications of mappings between International Classification of Diseases clinical diagnosis codes and Human Phenotype Ontology terms. JAMIA Open 7(4): ooae118, Dec 2024 Notes: *consortia authorship.
10e Donnelly HK, Ashcraft LE, Romano JD, Daniels S, Mowery DL: Using Topic Modeling to Understand Implementation Science in the Biomedical Literature. AMIA Informatics Summit. Pittsburgh, PA Mar 2024.
16e Profka K, Wang A, Schriver E, Batugo A, Morgan A, Mowery D*, Bressman E*: Patient Interaction Phenotypes with an Automated Text Message-Based Program and Use of Acute Health Care Resources After Hospital Discharge. JMIR mHealth & uHealth 27: e72875, Jul 2025 Notes: *shared co-last authorship.
1a3 Lin T, Tang M, Bauermeister JA, Tran JT, Kautz M, Donnelly H, Webster J, Wolfe JR, Ben-Nathan J, Arcamano A, Oquendo MA, Brown G, Mowery D, Brown LA: Moderating Effects of Coping Strategies on the Prospective Relationships Between Stigma and Depression Among Emerging Adult Sexual Minorities. Journal of Affective Disorders 390: 119843, Dec 2025.
160 Donnelly HK, Brown GK, Green KL, Labouliere C, Mowery DL: Development of a Large Language Model (LLM)-based Auto-scoring Tool to Evaluate Safety Plan Quality in Outpatient Mental Health Settings. 2025 IASR/AFSP International Summit on Suicide Research Nov 2025 Notes: Boston, MA.
13e Profka K, Wang A, Mowery D, Schriver E, Morgan A, Bressman E: Patient Interaction Phenotypes with a Post-Discharge Text Messaging Service and their Association with Hospital Revisits Journal of Hospital Medicine - SHM Converge Meeting Apr 2025.
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