Tobias D Raabe, PhD

faculty photo
Research Assistant Professor of Medicine (Translational Medicine and Human Genetics)
Department: Medicine

Contact information
11-136 Smilow Center for Translational Research
3400 Civic Center Boulevard
University of Pennsylvania
Philadelphia, PA 19104
Office: 215 805 1047
Lab: 215 898 5762
Education:
B.S. (General Studies, Natural Sciences, Music)
Paracelsus Gymnasium Hohenheim, Stuttgart, Germany, 1977.
M.S. (Microbiology)
University of Hohenheim, Stuttgart, Germany, 1984.
Ph.D. (Molecular Genetics, lab of Prof. Werner Arber)
University of Basel, Basel, Switzerland, 1988.
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Description of Research Expertise

Dr. Raabe is a Research Assistant Professor at the Division of Translational Medicine and Human Genetics at the Department of Medicine. His lab is pioneering the derivation and characterization of adult mouse and human liver derived bipotent ductal organoids. These organoids can be cloned and passaged over many months in culture but their genetic manipulation is challenging. The Raabe lab uses these organoids for liver cell/gene therapy as well as for liver disease modeling and drug screening. Recently, the Raabe lab discovered that bipotent ductal organoids can readily be derived from endstage MASH patient liver and have shown that they share many functional properties of the MASH liver they were derived from. This opens a new area of personalized functional analysis and medicine for MASH based on MASH patient liver derived organoids. In addition, the Raabe lab has strong expertise in CRISPR-mediated gene targeting, originally by generation many novel CRISPR mediated mutant mice. Most recently, he works on CRISPR - generated knockout and knockin models in human tissue derived organoids which are traditionally hard to genetically manipulate. To address this, Dr. Raabe has initiated in 2023 a collaboration with the Weissmann and Muzykantov labs at the Penn Institute for RNA Innovation to use mRNA LNPs for fast and efficient gene targeting directly in non proliferating MASH organoid co-cultures. These co-cultures consist of parenchymal cells as well as other profibrotic cell types such as myofibrolasts and macrophages. LNPs targeting specifically each cell type have been generated successfully. They are currently employed to probe specific profibrotic pathways in these cell types in the context of multi cell type co-cultures. Importantly this LNP-organoid system allows for high throughput screening applications to discover new gene specific LNP mediated candidate therapeutic treatments.

Selected Publications

Tobias Raabe1 Dylan Haseman1 Andy Liu1 Khushal Bantu1 Vladimir Muzykantov1 Drew Weissman1 Jilian Melamed1 Jia Nong1, 1University of Pennsylvania: A MASH PATIENT LIVER DERIVED 3D FIBROSIS MODEL FOR THE DESIGN AND VALIDATION OF CANDIDATE THERAPEUTIC LIPID NANOPARTICLES. AASLD supplement The Liver Meeting 2025 November 2025.

Liu, Andy' Haseman, Dylan; Bantu, Khushal; Muzykantov, Vladimir; Weissman, Drew; Melamed, Jilian; Nong, Jia; Raabe, Tobias: Engineering a Fibrotic Scar Organoid Model for MASH Liver Disease. Scholarly Commons, University of Pennsylvania, CURF poster. https://repository.upenn.edu/handle/20.500.14332/62039, September 2025.

Andy Liu, Dylan Haseman, Khushal Bantu, Jia Nong, Vladimir Muzykantov, Jilian Melamed, Michael Kegel, Jenna Muscat-Rivera, Drew Weissman, David Smith, Mei Zhang, Daniel J Rader, Tobias D Raabe: Modeling Fibrosis with MASH Patient Liver-Derived Organoids. biorxiv.org Page: 2025.09. 18.677209, September 2025 Notes: viewed > 412 times / first 11 weeks of posting and pdf downloaded >270 times. For bioengineering, organoids, LNPs this is in the upper 20% of # views in Biorxiv. >65% of abstract readers also downloaded the pdf, indicating serious interest by experts in the field.

Dorottya Laczko 1, Patricia Y Tsao 2, Ruth-Anne Pai 3, Joseph Zinski 4, Michael V Gonzalez 2, Melanie Mumau 5, Tobias D Raabe 2, Hiromi Muramatsu 5, Norbert Pardi 2, Taku Kambayashi 6, David C Fajgenbaum 6: A patient-derived CABIN1 mutation recapitulates features of idiopathic multicentric Castleman disease in a mouse model. Blood Advances August 2025.

Anagh A Sahasrabuddhe, Xiaofei Chen, Kaiyu Ma, Rui Wu, Huan-Chang Liang, Richa Kapoor, Rishi R Chhipa, Ozlem Onder, Courtney McFetridge, John S Van Arnam, Xiao Zhang, Jennifer JD Morrissette, Vinodh Pillai, Marilyn M Li, Philippe Szankasi, Venkatesha Basrur, Kevin P Conlon, Tobias D Raabe, Nathanael G Bailey, Cory M Hogaboam, Robert Rottapel, Junhyong Kim, Cristina López, Matthias Schlesner, Reiner Siebert, Kostiantyn Dreval, Ryan D Morin, Loredana Moro, Michele Pagano, Louis M Staudt, Megan S Lim, Kojo SJ Elenitoba-Johnson: The FBXO45–GEF-H1 Axis Controls Germinal Center Formation and B-cell Lymphomagenesis. Cancer Discovery 15(4), April 2025.

Tobias D. Raabe, Jilian Melamed, Mohamad-Gabriel Alameh, Drew Weissman : HUMAN ORGANOIDS FOR OPTIMIZATION OF LNP MEDIATED TARGETING OF NON PARENCHYMAL PATIENT LIVER CELL TYPES. ASGCT meeting Baltimore ASGCT, May 2024.

Tobias D. Raabe, Sarah McCarron, Mohamad-Gabriel Alameh, Drew Weissman, Brooke Bathon: LNPs for editing NASH patient liver derived organoids. American Society of Gene & Cell Therapy (ASGCT) Annual Meeting, Los Angeles, CA May 2023 Notes: Poster.

Larsen LE, van den Boogert MAW, Rios-Ocampo WA, Jansen JC, Conlon D, Chong PLE, Levels JHM, Eilers RE, Sachdev VV, Zelcer N, Raabe T, He M, Hand NJ, Drenth JPH, Rader DJ, Stroes ESG, Lefeber DJ, Jonker JW, Holleboom AG : Defective Lipid Droplet-Lysosome Interaction Causes Fatty Liver Disease as Evidenced by Human Mutations in TMEM199 and CCDC115. Cell Mol Gastroenterol Hepatol 13(2): 583-597, Oct 2022.

Tobias D. Raabe, Sarah McCarron, Brooke Bathon: Organoids derived from the liver of patients with NASH exhibit highly variable patient specific senescence phenotypes. American Association for the Study of Liver Diseases (AASLD) Annual Meeting, New Orleans, LA Jun 2022.

Lian Cui, Jeff Guo, Suna L Cranfill, Mayank Gautam, Janardhan Bhattarai, William Olson, Katherine Beattie, Rosemary C Challis, Qinxue Wu, Xue Song, Tobias Raabe, Viviana Gradinaru, Minghong Ma, Qin Liu, Wenqin Luo: Glutamate in primary afferents is required for itch transmission. Neuron 110(5): 809-823, Mar 2022.

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Last updated: 12/15/2025
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