Brendan J Kelly, MD

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Assistant Professor of Medicine at the Hospital of the University of Pennsylvania
Department: Medicine

Contact information
731 Blockley Hall
Philadelphia, PA 19104
Education:
AB (History and Science)
Harvard College, Harvard University, 2002.
MD
College of Physicians and Surgeons, Columbia University, 2007.
MSCE (Genetic Epidemiology)
Center for Clinical Epidemiology and Biostatistics, University of Pennsylvania, 2013.
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Description of Clinical Expertise

respiratory tract infection; Clostridium difficile infection; HIV

Description of Research Expertise

microbial ecology; next-generation sequencing; respiratory tract microbiome; ventilator-associated infection; Clostridium difficile infection

Selected Publications

Agarwal R, Bartsch SM, Kelly BJ, Prewitt M, Liu Y, Chen Y, Umscheid CA: Newer glycopeptide antibiotics for treatment of complicated skin and soft tissue infections: a systematic review, network meta-analysis and cost analysis. Clin Microbiol Infect 24(4): 361-368, Apr 2018.

Kelly BJ, Tebas P: Clinical practice and infrastructure review of fecal microbiota transplantation for Clostridium difficile infection. Chest 153(1): 266-277, Jan 2018.

Kelly BJ, Rivera J, Pirofski LA: Oropharyngeal Bacterial Community Composition Correlates with Baseline and Post-Vaccination Pneumococcal Polysaccharide Antibody Levels in HIV-Infected Subjects. Infectious Diseases Society of America (IDSA) Annual ID Week 2017 Oct 2017 Notes: Poster presentation.

Kelly BJ, Bushman FD, Collman RG, Lautenbach E: Nasal Microbiome Features of Staphylococcus aureus Colonization and Infection During Critical Illness. NIH Human Microbiome Project Workshop 2017 Aug 2017 Notes: Poster presentation.

Fuller RV, Fitzpatrick R, Lautenbach E, Pegues DA, Kelly BJ: Increasing Frequency of Subglottic Suctioning During Mechanical Ventilation Anticipates Adverse Ventilator-Associated Events. American Society for Microbiology (ASM) Microbe 2017 Jun 2017 Notes: Poster presentation.

Kelly BJ, Lewis JD, Wu GD, Bushman FD: Longitudinal Metagenomic Analysis of Stool Bacterial Community Composition Detects Incident Extended-Spectrum Beta-Lactamases Associated with Antibiotic Treatment. American Society for Microbiology (ASM) Microbe 2017 Jun 2017 Notes: Poster presentation.

Kelly BJ, Lautenbach E, Nachamkin I, Coffin SE, Gerber JS, Fuchs Garrigan C, Han X, Bilker WB, Wise J, Tolomeo P, Han JH, for the Centers for Disease Control and Prevention (CDC) Prevention Epicenters Program: Combined Biomarkers Discriminate Mortality Risk Among Critically Ill Patients with Suspected Sepsis. Infectious Diseases Society of America (IDSA) Annual ID Week 2016 Oct 2016 Notes: Poster presentation.

Kelly BJ, Lautenbach E, Nachamkin I, Coffin SE, Gerber JS, Fuchs BD, Garrigan C, Han X, Bilker WB, Wise J, Tolomeo P, Han JH, Centers for Disease Control and Prevention (CDC) Prevention Epicenters Program: Combined biomarkers discriminate a low likelihood of bacterial infection among surgical intensive care unit patients with suspected sepsis. Diag Microbiol Infect Dis 85(1): 109-115, May 2016.

Kelly BJ, Imai I, Bittinger K, Laughlin A, Fuchs BD, Bushman FD, Collman RG: Composition and dynamics of the respiratory tract microbiome in intubated patients. Microbiome 4: 7, Feb 2016.

Kelly BJ, Gross R, Bittinger K, Sherrill-Mix S, Lewis JD, Collman RG, Bushman FD, Li H: Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA. Bioinformatics 31(15): 2461-2468, Aug 2015.

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Last updated: 07/09/2018
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