Ron C Anafi, M.D., Ph.D.

faculty photo
Assistant Professor of Medicine at the Hospital of the University of Pennsylvania
Department: Medicine

Contact information
Translational Research Laboratories, Suite 2100
125 South 31st Street
Philadelphia, PA 19104
Education:
B.S.E. (Biomedical engineering and philosophy)
Tulane University, 1995.
Ph.D. (Applied mechanics)
University of Minnesota, 2002.
M.D.
University of Minnesota, 2004.
Permanent link
 
> Perelman School of Medicine   > Faculty   > Details

Selected Publications

Anafi RC, Francey LJ, Hogenesch JB, Kim J: CYCLOPS reveals human transcriptional rhythms in health and disease. Proceedings of the National Academy of Sciences of the United States of America 114(20): 5312-5317, May 2017.

Ruben Marc D, Wu Gang, Smith David F, Schmidt Robert E, Francey Lauren J, Lee Yin Yeng, Anafi Ron C, Hogenesch John B: A database of tissue-specific rhythmically expressed human genes has potential applications in circadian medicine. Science translational medicine 10(458), Sep 2018.

Ben-Zvi Danny, Meoli Luca, Abidi Wasif M, Nestoridi Eirini, Panciotti Courtney, Castillo Erick, Pizarro Palmenia, Shirley Eleanor, Gourash William F, Thompson Christopher C, Munoz Rodrigo, Clish Clary B, Anafi Ron C, Courcoulas Anita P, Stylopoulos Nicholas: Time-Dependent Molecular Responses Differ between Gastric Bypass and Dieting but Are Conserved Across Species. Cell metabolism 28(2): 310-323.e6, Aug 2018.

Foteinou Panagiota T, Venkataraman Anand, Francey Lauren J, Anafi Ron C, Hogenesch John B, Doyle Francis J: Computational and experimental insights into the circadian effects of SIRT1. Proceedings of the National Academy of Sciences of the United States of America Oct 2018.

Krishnaiah SY, Wu G, Altman B, Growe J, Rhoades SD, Coldren F, Venkataraman A, Olarerin-George AO, Francey LJ, Mukherjee S, Girish S, Selby CP, Cal S, Er U, Sianati B, Sengupta A, Anafi RC, Kavakli IH, Sancar A, Baur JA, Dang CV, Hogenesch JB, Weljie AM: Clock regulation of metabolites reveals coupling between transcription and metabolism. Cell Metabolism 25(4): 961-974.e4, Apr 2017.

Wu G, Anafi RC, Hughes ME, Kornacker K, Hogenesch JB: MetaCycle: an integrated R package to evaluate periodicity in large scale data. Bioinformatics 32(21): 3351-3353, Nov 2016.

Zhang R, Podtelezhnikov AA, Hogenesch JB, Anafi RC: Discovering biology in periodic data through Phase Set Enrichment Analysis (PSEA). Journal of Biological Rhythms 31(3): 244-257, Jun 2016.

Arnardottir ES, Nikonova EV, Shockley KR, Podtelezhnikov AA, Anafi RC, Tanis KQ, Maislin G, Stone DJ, Renger JJ, Winrow CJ, Pack AI: Blood-gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation. Sleep 37(10): 1589-1600, Oct 2014.

Anafi RC, Lee Y, Sato TK, Venkataraman A, Ramanathan C, Kavakli IH, Hughes ME, Baggs JE, Growe J, Liu AC, Kim J, Hogenesch J: Machine learning helps identify CHRONO as a circadian clock component. PLoS Biology 12(4): e1001840, Apr 2014.

Deckard A, Anafi RC, Hogenesch JB, Haase SB, Harer J: Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data. Bioinformatics (Oxford, England) 29(24): 3174-3180, Dec 2013.

back to top
Last updated: 12/05/2018
The Trustees of the University of Pennsylvania