Kyle Bittinger, Ph.D.

faculty photo
Assistant Professor of Pediatrics at the Children's Hospital of Philadelphia
Department: Pediatrics

Contact information
The Children's Hospital of Philadelphia
Microbiome Center
Roberts Center for Pediatric Research
2716 South Street, 14th Floor
Philadelphia, PA 19146-2305
Office: 267-425-1641
Education:
B.S. (Chemistry)
University of Pittsburgh, 2001.
Ph.D. (Physical Chemistry)
Massachusetts Institute of Technology, 2008.
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Selected Publications

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet C, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope E, Da Silva R, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley G, Janssen S, Jarmusch AK, Jiang L, Kaehler B, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MG, Lee J, Ley R, Liu Y, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton J, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson, II MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CH, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. 2018: QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science. PeerJ Preprints 6:e27295v2 https://doi.org/10.7287/peerj.preprints.27295v2 Dec 2018.

Firrman J, Liu L, Van den Abbeele, P, Tanes C, Bittinger K, Tomasula P : Applying advanced in vitro culturing technology to study the human gut microbiota JoVE (accepted Nov 2018) Nov 2018.

Knecht VR, McGinniss JE, Shankar H, Clarke EL, Kelly BJ, Imai I, Fitzgerald AS, Bittinger K, Bushman F,Collman RG: Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit. Infection Control & Hospital Epidemiology (accepted Nov 2018) Nov 2018.

Godoy-Vitorino F, Romaguera J, Zhao C, Vargas-Robles D, Ortiz-Morales G, Vázquez-Sánchez F, Sanchez-Vázquez M, de la Garza-Casillas M, Martinez-Ferrer M, White JR, Bittinger K, Dominguez-Bello MG, Blaser MJ : Cervicovaginal fungi and bacteria associated with cervical intraepithelial neoplasia and high-risk Human Papillomavirus infections in a Hispanic population. Front. Microbiol, Oct 23, 2018 Oct 2018 Notes: (https://doi.org/10.3389/fmicb.2018.02533).

Conrad M, Bittinger K, Ren Y, Dawany N, Baldassano RN, Bushman F, Kelsen J.: Taxonomic and metabolic differences among very early onset inflammatory bowel disease, older onset pediatric inflammatory bowel disease. 2018 NASPGHAN Annual Meeting, Hollywood, FL (accepted) Oct 24-27 2018 Notes: Poster presentation.

Rhee Rennie L, Sreih Antoine G, Najem Catherine E, Grayson Peter C, Zhao Chunyu, Bittinger Kyle, Collman Ronald G, Merkel Peter A: Characterisation of the nasal microbiota in granulomatosis with polyangiitis. Ann Rheum Dis 77(10): 1448-1453, Oct 2018 Notes: doi: 10.1136/annrheumdis-2018-213645. Epub 2018 Jul 11.

Graham K, Tanes C, Bittinger K, Lemke A, Heuckeroth R: Restoration of anti-inflammatory microbial community in children with Hirschsprung disease after pull-through surgery. NASPGHAN 2018, Hollywood, FL (accepted) Oct 24-27 2018 Notes: Poster presentation.

Leiby Jacob S, McCormick Kevin, Sherrill-Mix Scott, Clarke Erik L, Kessler Lyanna R, Taylor Louis J, Hofstaedter Casey E, Roche Aoife M, Mattei Lisa M, Bittinger Kyle, Elovitz Michal A, Leite Rita, Parry Samuel, Bushman Frederic D: Lack of detection of a human placenta microbiome in samples from preterm and term deliveries. Microbiome 6(1): 196, Oct 2018.

Najem CE, Lee J, Tanes CE, Strange WC, Friedman E, Sreih AG, Rhee RL, Geara A, Li H, Bittinger K, Lewis JD, Wu GD, Merkel PA: Characterizing the gut and plasma metabolome in patients with ANCA-associated vasculitis. American College of Radiology Annual Meeting, Chicago IL (accepted) Oct 22 2018 Notes: Poster presentation.

Friedman Elliot S, Li Yun, Shen Ting-Chin David, Jiang Jack, Chau Lillian, Adorini Luciano, Babakhani Farah, Edwards Jeffrey, Shapiro David, Zhao Chunyu, Carr Rotonya M, Bittinger Kyle, Li Hongzhe, Wu Gary D: FXR-Dependent Modulation of the Human Small Intestinal Microbiome by the Bile Acid Derivative Obeticholic Acid. Gastroenterology Aug 2018 Notes: doi: 10.1053/j.gastro.2018.08.022 [Epub ahead of print]

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Last updated: 12/05/2018
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