Selected Publications

Gomez-Simmonds A, Annavajhala MK, Seeram D, Hokunson TW, Park H, Uhlemann AC.: Genomic epidemiology of carbapenem-resistant Enterobacterales at a New York City hospital over a 10-year period reveals complex plasmid-clone dynamics and evidence for frequent horizontal transfer of bla (KPC). Genome Res 34: 1895-1907, Nov 2024.

Balamohan A, Annavajhala MK, Boyar V, Chong A, Uhlemann AC, Rubin LG.: Recurrent colonization with methicillin-susceptible Staphylococcus aureus after successful decolonization in a neonatal intensive care unit. Infect Control Hosp Epidemiol Oct 2024.

Rubinstein T, Brickman AM, Cheng B, Burkett S, Park H, Annavajhala MK, Uhlemann AC, Andrews H, Gutierrez J, Paster BJ, Noble JM, Papapanou PN.: Periodontitis and brain magnetic resonance imaging markers of Alzheimer's disease and cognitive aging. Alzheimers Dement 2024.

Iketani S, Mohri H, Culbertson B, Hong SJ, Duan Y, Luck MI, Annavajhala MK, Guo Y, Sheng Z, Uhlemann AC, Goff SP, Sabo Y, Yang H, Chavez A, Ho DD.: Multiple pathways for SARS-CoV-2 resistance to nirmatrelvir. Nature Aug 2023.

St John A, Perault AI, Giacometti SI, Sommerfield AG, DuMont AL, Lacey KA, Zheng X, Sproch J, Petzold C, Dancel-Manning K, Gonzalez S, Annavajhala M, Beckford C, Zeitouni N, Liang FX, van Bakel H, Shopsin B, Uhlemann AC, Pironti A, Torres VJ.: Capsular Polysaccharide Is Essential for the Virulence of the Antimicrobial-Resistant Pathogen Enterobacter hormaechei. mBio 14: e0259022, Apr 2023.

Link-Gelles R, Levy ME, Natarajan K, Reese SE, Naleway AL, Grannis SJ, Klein NP, DeSilva MB, Ong TC, Gaglani M, Hartmann E, Dickerson M, Stenehjem E, Kharbanda AB, Han J, Spark TL, Irving SA, Dixon BE, Zerbo O, McEvoy CE, Rao S, Raiyani C, Sloan-Aagard C, Patel P, Dascomb K, Uhlemann AC, Dunne MM, Fadel WF, Lewis N, Barron MA, Murthy K, Nanez J, Griggs EP, Grisel N, Annavajhala MK, Akinseye A, Valvi NR, Goddard K, Mamawala M, Arndorfer J, Yang DH, Embí PJ, Fireman B, Ball SW, Tenforde MW.: Estimation of COVID-19 mRNA Vaccine Effectiveness and COVID-19 Illness and Severity by Vaccination Status During Omicron BA.4 and BA.5 Sublineage Periods. JAMA Netw Open 1(6): e232598, March 2023.

Baldwin-Hunter BL, Rozenberg FD, Annavajhala MK, Park H, DiMango EA, Keating CL, Uhlemann AC, Abrams JA.: The gut microbiome, short chain fatty acids, and related metabolites in cystic fibrosis patients with and without colonic adenomas. J Cyst Fibros 22(4): 738-744, January 2023.

Noel YR, Park H, Annavajhala MK, Tillman AM, Seeram D, Moallem DH, Gome-Simmonds A, Verna EC, Uhlemann A: Intestinal Dysbiosis is Associated with Risk of Acute Cellular Rejection after Liver Transplant in Patients with Autoimmune Liver Disease. AASLD The Liver Meeting, Boston, MA, Poster Presentation 2023.

Annavajhala MK, Hokunson TJ, Kelley A, Gomez-Simmonds A, Uhlemann A-C.: Wastewater Surveillance Identifies Hospital Diversity Of Pathogenic Fungi Including Candida auris. ASM Microbe Meeting, Houston, TX, Podium presentation 2023.

Annavajhala MK, Kelly NE, Geng W, Ferguson SA, Giddins MJ, Grohs EC, Hill-Ricciuti A, Green DA, Saiman L, Uhlemann AC.: Genomic and Epidemiological Features of Two Dominant Methicillin-Susceptible Staphylococcus aureus Clones from a Neonatal Intensive Care Unit Surveillance Effort. mSphere 7: e0040922, Dec 2022.