Arghya Mukherjee, Ph.D.

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Assistant Professor of Pediatrics
Department: Pediatrics

Contact information
Tufts University
419 Boston Ave
Medford, MA 02115
Education:
MS (Bioinformatics and Biotechnology)
Institute of Bioinformatics and Biotechnology, Savitribai Phule Pune University , 2010.
Ph.D. (Neurobiology)
Friedrich Miescher Institute, University of Basel, 2017.
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Description of Research Expertise

We, at the Mukherjee lab, take a systems neuroscience approach to understand how brain circuits support complex cognition and how disruptions in these circuits contribute to psychiatric disorders. Our research primarily focuses on the prefrontal cortex (PFC) and its dynamic interactions with key brain regions like the hippocampus and thalamus.

We use an integrative approach, combining behavioral physiology with advanced techniques such as circuit tracing, single-cell transcriptomics, and optogenetic manipulations. Using rodents and treeshrews as model organisms, we investigate how specific populations of neurons within the PFC and across its wider network work together to support cognitive functions like memory consolidation and inference based reasoning.

By studying these circuits in freely behaving animals we formulate hypotheses about their functional roles and causally validate them using optical and pharmacological tools. A key aspect of our work is to understand the functional maturation of cognitive control circuits across normal development and their fidelity in animal models of psychiatric disorders. Ultimately, our goal is to identify novel therapeutic strategies to enhance cognitive function and treat mental health conditions.

Selected Publications

Zhang X, Mukherjee A, Halassa MM, Chen ZS: Mediodorsal thalamus regulates task uncertainty to enable cognitive flexibility. Nature Communications 16(1): 2640, March 2025.

Mukherjee A, Bajwa N, Scott JS, Cho N, Nishi T, Moss SJ, Halassa MM: Prefrontal cortex chloride dysregulation: A Novel Therapeutic Target for cognitive enhancement in schizophrenia. Society of Biological Psychiatry Annual Meeting 2025 2025.

Mukherjee A, Bajwa N, Scott JS, Cho N, Nishi T, Moss SJ, Halassa MM: A direct link between Prefrontal E/I balance and executive dysfunction in schizophrenia. Cosyne 2025.

Lam NH, Mukherjee A, Wimmer RD, Nassar MR, Chen ZS, Halassa MM.: Prefrontal transthalamic uncertainty processing drives flexible switching. Nature 637(8044): 127-136, November 2024.

Scott DN, Mukherjee A, Nassar MR, Halassa MM.: Thalamocortical architectures for flexible cognition and efficient learning. Trends Cogn Sci 28(8): 739-756, August 2024.

Mukherjee A, Halassa MM.: The Associative Thalamus: A Switchboard for Cortical Operations and a Promising Target for Schizophrenia. Neuroscientist 30(1): 132-147, February 2024.

Schulmann A, Feng N, Auluck PK, Mukherjee A, Komal R, Leng Y, Gao C, Williams Avram SK, Roy S, Usdin TB, Xu Q, Imamovic V, Patel Y, Akula N, Raznahan A, Menon V, Roussos P, Duncan L, Elkahloun A, Singh J, Kelly MC, Halassa MM, Hattar S, Penzo MA, Marenco S, McMahon FJ.: A conserved cell-type gradient across the human mediodorsal and paraventricular thalamus. bioRxiv Page: doi: 10.1101, 2024 Notes: epub.

Mukherjee A, Scott J, Bajwa N and Halassa MM: Amelioration of selective cognitive symptoms by targeted restoration of Prefrontal E/I balance in a 22Q11 deletion syndrome model. Society for Neuroscience Annual Meeting, Washington DC 2023 Notes: Poster.

Mukherjee A and Halassa MM: Targeted modulation of MD-PFC thalamocortical loops – A novel therapeutic strategy towards the treatment of Schizophrenia 13th Forum on Neuroscience: Federation of European Neuroscience Societies, Paris, France 2022 Notes: Podium.

Mukherjee A, Scott J, Bajwa N and Halassa MM: Targeted modulation of thalamocortical circuits – A novel therapeutic strategy for schizophrenia. Society for Neuroscience Annual Meeting, San Diego, CA 2022 Notes: Poster.

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Last updated: 04/26/2025
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