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John Lee
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Associate Professor of Medicine (Renal-Electrolyte and Hypertension) at the Hospital of the University of Pennsylvania
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Department: Medicine
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Contact information
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Weill Cornell Medical College
2f Division of Nephrology and Hypertension
3b 525 East 68th Street, Box #3
New York, NY 10065
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2f Division of Nephrology and Hypertension
3b 525 East 68th Street, Box #3
New York, NY 10065
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Office: (212) 746-4430
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Education:
21 9 A.B. 3a (A.B. in Biochemical Sciences, magna cum laude) c
28 Harvard College, 2003.
21 9 M.D. 1b (Medical Degree) c
36 Weill Cornell Medical College, 2007.
21 9 M.S. 3c (M.S in Clinical and Translational Investigation) c
36 Weill Cornell Medical College, 2016.
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Permanent link21 9 A.B. 3a (A.B. in Biochemical Sciences, magna cum laude) c
28 Harvard College, 2003.
21 9 M.D. 1b (Medical Degree) c
36 Weill Cornell Medical College, 2007.
21 9 M.S. 3c (M.S in Clinical and Translational Investigation) c
36 Weill Cornell Medical College, 2016.
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d6 Shuai Li, Runzhe Li, John R Lee, Ni Zhao, Wodan Ling: ZINQ-L: a zero-inflated quantile approach for differential abundance analysis of longitudinal microbiome data 4b Frontiers in genetics 1(5): 1494401, January 2025.
1a9 Mark B Lockwood, Choa Sung, Suzanne A Alvernaz, John R Lee, Jennifer L Chin, Mehdi Nayebpour, Beatriz Peñalver Bernabé, Lisa M Tussing-Humphreys, Hongjin Li, Mario Spaggiari, Alessandro Martinino, Chang G Park, George E Chlipala, Ardith Z Doorenbos, Stefan J Green: The Gut Microbiome and Symptom Burden After Kidney Transplantation: An Overview and Research Opportunities 56 Biological research for nursing 26(4): 636-656, October 2024.
dc Ying Li, Teresa Lee, Kai Marin, Xing Hua, Sujatha Srinivasan, David N Fredricks, John R Lee, Wodan Ling: SurvBal: compositional microbiome balances for survival outcomes 27 Bioinformatics (Oxford, England) 34 40(140): btae612, October 2024.
f6 Hanbo Dong, Runzhe Li, Ni Zhao, Darshana M Dadhania, Manikkam Suthanthiran, John R Lee, Wodan Ling: Antibiotic subclasses differentially perturb the gut microbiota in kidney transplant recipients 4d Frontiers in Transplant(3), 1400067, September 2024.
122 Amal Naji, Drew Siskin, Michael H Woodworth, John R Lee, Colleen S Kraft, Nirja Mehta: The Role of the Gut, Urine, and Vaginal Microbiomes in the Pathogenesis of Urinary Tract Infection in Women and Consideration of Microbiome Therapeutics 50 Open forum infectious diseases 11(9): 471, August 2024.
1ad Meredith Aull, Pauline Paton, Perry, Jennifer Lee, John R Lee, Thalia Salinas, Deirdre Sawinski, Jun B Lee, Choli Hartono, Muthukumar Thangamani, Sandip Kapur, Manikkam Suthanthiran, Darshana Dadhania: How Low Can you Go with Rabbit Anti-Thymocyte Globulin Induction Therapy. American Journal of Transplantation 24(6): S918, June 2024 Notes: Abstract C141.
160 Carol Li, Darshana Dadhania, Manikkam Suthanthiran, John R Lee: Gut Microbial Derived Fecal Short Chain Fatty Acid Abundance Correlates with Urinary Tract Infection in Kidney Transplant Recipients. American Journal of Transplantation 24(6): S942, June 2024 Notes: Abstract C196.
16f Liz-Audrey Kounatse Djomnang, Carol Li, Omary Mzava, Alexandre Pellan Cheng, Adrienne Chang, Joan Sesing Lenz, Manikkam Suthanthiran, John R Lee, Darshana M Dadhania, Iwijn De Vlaminck: A quantitative comparison of urine centrifugation and filtration for the isolation and analysis of urinary nucleic acid biomarkers 44 Scientific Reports 14(14): 10872, May 2024.
164 Sylvia Wu, Nicholas Tedrow, Abhinav Bhalla, Alex Devito, Sheavonnie Wright, Carol Li, Darshania Dadhania, Vesh Srivatana, Jeffrey Silberzweig. John R Lee: A Distinct Nasal Microbiota in Hemodialysis Patients: A Pilot Study. American Journal of Kidney Disease 83(4): S84, April 2024.
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Selected Publications
164 Silvia Wu, Nicholas Tedrow, Abhinav Bhalla, Alex Devito, Sheavonnie Wright, Friederike Selbach, Darshana M. Dadhania, Carol Li, Vesh Srivatana, Jeffrey Silberzweig, John R. Lee: A Staphylococcus Dominant Nasal Microbiota in Hemodialysis Patients. Kidney Medicine 7(10), October 2025.d6 Shuai Li, Runzhe Li, John R Lee, Ni Zhao, Wodan Ling: ZINQ-L: a zero-inflated quantile approach for differential abundance analysis of longitudinal microbiome data 4b Frontiers in genetics 1(5): 1494401, January 2025.
1a9 Mark B Lockwood, Choa Sung, Suzanne A Alvernaz, John R Lee, Jennifer L Chin, Mehdi Nayebpour, Beatriz Peñalver Bernabé, Lisa M Tussing-Humphreys, Hongjin Li, Mario Spaggiari, Alessandro Martinino, Chang G Park, George E Chlipala, Ardith Z Doorenbos, Stefan J Green: The Gut Microbiome and Symptom Burden After Kidney Transplantation: An Overview and Research Opportunities 56 Biological research for nursing 26(4): 636-656, October 2024.
dc Ying Li, Teresa Lee, Kai Marin, Xing Hua, Sujatha Srinivasan, David N Fredricks, John R Lee, Wodan Ling: SurvBal: compositional microbiome balances for survival outcomes 27 Bioinformatics (Oxford, England) 34 40(140): btae612, October 2024.
f6 Hanbo Dong, Runzhe Li, Ni Zhao, Darshana M Dadhania, Manikkam Suthanthiran, John R Lee, Wodan Ling: Antibiotic subclasses differentially perturb the gut microbiota in kidney transplant recipients 4d Frontiers in Transplant(3), 1400067, September 2024.
122 Amal Naji, Drew Siskin, Michael H Woodworth, John R Lee, Colleen S Kraft, Nirja Mehta: The Role of the Gut, Urine, and Vaginal Microbiomes in the Pathogenesis of Urinary Tract Infection in Women and Consideration of Microbiome Therapeutics 50 Open forum infectious diseases 11(9): 471, August 2024.
1ad Meredith Aull, Pauline Paton, Perry, Jennifer Lee, John R Lee, Thalia Salinas, Deirdre Sawinski, Jun B Lee, Choli Hartono, Muthukumar Thangamani, Sandip Kapur, Manikkam Suthanthiran, Darshana Dadhania: How Low Can you Go with Rabbit Anti-Thymocyte Globulin Induction Therapy. American Journal of Transplantation 24(6): S918, June 2024 Notes: Abstract C141.
160 Carol Li, Darshana Dadhania, Manikkam Suthanthiran, John R Lee: Gut Microbial Derived Fecal Short Chain Fatty Acid Abundance Correlates with Urinary Tract Infection in Kidney Transplant Recipients. American Journal of Transplantation 24(6): S942, June 2024 Notes: Abstract C196.
16f Liz-Audrey Kounatse Djomnang, Carol Li, Omary Mzava, Alexandre Pellan Cheng, Adrienne Chang, Joan Sesing Lenz, Manikkam Suthanthiran, John R Lee, Darshana M Dadhania, Iwijn De Vlaminck: A quantitative comparison of urine centrifugation and filtration for the isolation and analysis of urinary nucleic acid biomarkers 44 Scientific Reports 14(14): 10872, May 2024.
164 Sylvia Wu, Nicholas Tedrow, Abhinav Bhalla, Alex Devito, Sheavonnie Wright, Carol Li, Darshania Dadhania, Vesh Srivatana, Jeffrey Silberzweig. John R Lee: A Distinct Nasal Microbiota in Hemodialysis Patients: A Pilot Study. American Journal of Kidney Disease 83(4): S84, April 2024.
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