John Lee
Associate Professor of Medicine (Renal-Electrolyte and Hypertension) at the Hospital of the University of Pennsylvania
Department: Medicine
Contact information
Weill Cornell Medical College
Division of Nephrology and Hypertension
525 East 68th Street, Box #3
New York, NY 10065
Division of Nephrology and Hypertension
525 East 68th Street, Box #3
New York, NY 10065
Office: (212) 746-4430
Education:
A.B. (A.B. in Biochemical Sciences, magna cum laude)
Harvard College, 2003.
M.D. (Medical Degree)
Weill Cornell Medical College, 2007.
M.S. (M.S in Clinical and Translational Investigation)
Weill Cornell Medical College, 2016.
Permanent linkA.B. (A.B. in Biochemical Sciences, magna cum laude)
Harvard College, 2003.
M.D. (Medical Degree)
Weill Cornell Medical College, 2007.
M.S. (M.S in Clinical and Translational Investigation)
Weill Cornell Medical College, 2016.
Selected Publications
Silvia Wu, Nicholas Tedrow, Abhinav Bhalla, Alex Devito, Sheavonnie Wright, Friederike Selbach, Darshana M. Dadhania, Carol Li, Vesh Srivatana, Jeffrey Silberzweig, John R. Lee: A Staphylococcus Dominant Nasal Microbiota in Hemodialysis Patients. Kidney Medicine 7(10), October 2025.Shuai Li, Runzhe Li, John R Lee, Ni Zhao, Wodan Ling: ZINQ-L: a zero-inflated quantile approach for differential abundance analysis of longitudinal microbiome data Frontiers in genetics 1(5): 1494401, January 2025.
Mark B Lockwood, Choa Sung, Suzanne A Alvernaz, John R Lee, Jennifer L Chin, Mehdi Nayebpour, Beatriz Peñalver Bernabé, Lisa M Tussing-Humphreys, Hongjin Li, Mario Spaggiari, Alessandro Martinino, Chang G Park, George E Chlipala, Ardith Z Doorenbos, Stefan J Green: The Gut Microbiome and Symptom Burden After Kidney Transplantation: An Overview and Research Opportunities Biological research for nursing 26(4): 636-656, October 2024.
Ying Li, Teresa Lee, Kai Marin, Xing Hua, Sujatha Srinivasan, David N Fredricks, John R Lee, Wodan Ling: SurvBal: compositional microbiome balances for survival outcomes Bioinformatics (Oxford, England) 40(140): btae612, October 2024.
Hanbo Dong, Runzhe Li, Ni Zhao, Darshana M Dadhania, Manikkam Suthanthiran, John R Lee, Wodan Ling: Antibiotic subclasses differentially perturb the gut microbiota in kidney transplant recipients Frontiers in Transplant(3), 1400067, September 2024.
Amal Naji, Drew Siskin, Michael H Woodworth, John R Lee, Colleen S Kraft, Nirja Mehta: The Role of the Gut, Urine, and Vaginal Microbiomes in the Pathogenesis of Urinary Tract Infection in Women and Consideration of Microbiome Therapeutics Open forum infectious diseases 11(9): 471, August 2024.
Meredith Aull, Pauline Paton, Perry, Jennifer Lee, John R Lee, Thalia Salinas, Deirdre Sawinski, Jun B Lee, Choli Hartono, Muthukumar Thangamani, Sandip Kapur, Manikkam Suthanthiran, Darshana Dadhania: How Low Can you Go with Rabbit Anti-Thymocyte Globulin Induction Therapy. American Journal of Transplantation 24(6): S918, June 2024 Notes: Abstract C141.
Carol Li, Darshana Dadhania, Manikkam Suthanthiran, John R Lee: Gut Microbial Derived Fecal Short Chain Fatty Acid Abundance Correlates with Urinary Tract Infection in Kidney Transplant Recipients. American Journal of Transplantation 24(6): S942, June 2024 Notes: Abstract C196.
Liz-Audrey Kounatse Djomnang, Carol Li, Omary Mzava, Alexandre Pellan Cheng, Adrienne Chang, Joan Sesing Lenz, Manikkam Suthanthiran, John R Lee, Darshana M Dadhania, Iwijn De Vlaminck: A quantitative comparison of urine centrifugation and filtration for the isolation and analysis of urinary nucleic acid biomarkers Scientific Reports 14(14): 10872, May 2024.
Sylvia Wu, Nicholas Tedrow, Abhinav Bhalla, Alex Devito, Sheavonnie Wright, Carol Li, Darshania Dadhania, Vesh Srivatana, Jeffrey Silberzweig. John R Lee: A Distinct Nasal Microbiota in Hemodialysis Patients: A Pilot Study. American Journal of Kidney Disease 83(4): S84, April 2024.