Current Students
Degree: MD/PhD
Matriculation Year: 2020
Rotations:
- Yoseph Barash
- Christoph Thaiss
- Mingyao Li
Degree: MD/PhD
Matriculation Year: 2020
Rotations:
- Andrew Tsourkas
- Michael Silverman
- Kai Tan
Degree: MD/PhD
Matriculation Year: 2015
Project Title: Enhancing molecular diagnosis in suspected Mendelian disorders using clinically focused splicing prediction algorithms
Advisor(s):
- Elizabeth Bhoj
- Yoseph Barash
Rotations:
- John Maris
- Jennifer Cremins
- Yoseph Barash
Degree: PhD
Matriculation Year: 2017
Project Title: Circadian Phase Inference in Single-Cell RNA-Seq
Advisor(s):
- Mingyao Li
- Garret FitzGerald
Rotations:
- Jason Moore
- Ian Barnett
- Golnaz Vahedi
Degree: PhD
Matriculation Year: 2017
Project Title: Leveraging Genome-wide Pleiotropy to Improve Multi-trait Association Methods for Electronic Health Record Data
Advisor(s):
- Benjamin Voight
- Marylyn Ritchie
Rotations:
- Christopher Brown
- Marylyn Ritchie
- Benjamin Voight
Degree: PhD
Matriculation Year: 2017
Project Title: A population-specific framework for mutation rate modeling
Advisor(s):
- Benjamin Voight
Rotations:
- Sarah Tishkoff
- Benjamin Voight
- Frederic Bushman
Degree: PhD
Matriculation Year: 2019
Rotations:
- Li-San Wang
- Yi Xing
- Ophir Shalem
Jenea is the founder of The Black Women in Computational Biology Network. The Network is a global community for Black women advancing biology through a computational lens. The Network is comprised of exciting women across all degree and professional levels from an array of backgrounds in biology, computer science, mathematics, bioengineering, biochemistry, biophysics, medicine, public health data science and much more connecting, collaborting, exchaning resources, and communicating science to our communities.
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Degree: PhD
Matriculation Year: 2017
Project Title: The genetics of Staphylococcus aureus virulence: consequences for diabetic wound healing.
Advisor(s):
- Elizabeth Grice
Rotations:
- Elizabeth Grice
- Frederic Bushman
Degree: MD/PhD
Matriculation Year: 2016
Project Title: Understanding the cellular and molecular basis of CAR Tcell therapy resistance.
Advisor(s):
- Kai Tan
Rotations:
- John Maris
- Kai Tan
Degree: PhD
Matriculation Year: 2018
Advisor(s):
- Li-San Wang
Rotations:
- Marylyn Ritchie
- Li-San Wang
- Gerard Schellenberg
Degree: PhD
Matriculation Year: 2018
Project Title: Linking cancer drivers through integrative analysis of genomic and transcriptomic alterations
Advisor(s):
- Casey Greene
Rotations:
- Casey Greene
- Danielle Bassett
- Pablo G. Camara
Degree: MD/PhD
Matriculation Year: 2014
Advisor(s):
- Arjun Raj
Rotations:
- Christopher Brown
- Arjun Raj
Degree: PhD
Matriculation Year: 2018
Project Title: Detection and quantification of alternative polyadenylation from RNA-seq to suggest novel regulators in health and disease
Advisor(s):
- Yoseph Barash
Rotations:
- Christopher Brown
- Zhaolan (Joe) Zhou
- Yoseph Barash
Degree: PhD
Matriculation Year: 2018
Project Title: Modeling Gene-Environment Interactions with Multi-task Machine Learning Methods to Explain GWAS0 Missing Heritability
Advisor(s):
- Jason Moore
Rotations:
- Jason Moore
- Kai Wang
- Casey Greene
Degree: PhD
Matriculation Year: 2018
Project Title: Incorporating biological knowledge into machine learning models to predict organ toxicity
Advisor(s):
- Jason Moore
Rotations:
- Jason Moore
- David Speicher
- Casey Greene
Degree: PhD
Matriculation Year: 2018
Project Title: Increasing the Power of Gene Expression Models by Incorporating Publicly Available Data
Advisor(s):
- Casey Greene
Rotations:
- Marylyn Ritchie
- Casey Greene
- Christopher Brown
Degree: PhD
Matriculation Year: 2018
Project Title: Investigating high-grade serous ovarian cancer heterogeneity through scRNA-seq
Advisor(s):
- Casey Greene
- John Wherry
Rotations:
- Casey Greene
- Struan Grant
- Christopher Brown
Degree: PhD
Matriculation Year: 2017
Project Title: Pathway Analysis of Recurrent Breast Cancer
Advisor(s):
- Lewis Chodosh
Rotations:
- Lewis Chodosh
- Sarah Tishkoff
- Elizabeth Grice
Degree: PhD
Matriculation Year: 2019
Advisor(s):
- Marylyn Ritchie
- Sarah Tishkoff
Rotations:
- Benjamin Voight
- Marylyn Ritchie
- Sarah Tishkoff
Degree: PhD
Matriculation Year: 2014
Project Title: The genomic and gene expression context of adaptive variation in indigenous African populations.
Advisor(s):
- Sarah Tishkoff
Rotations:
- Junhyong Kim
- Nancy Zhang
- Sarah Tishkoff
Degree: PhD
Matriculation Year: 2017
Project Title: From RNA Distribution in Neuron Dendrites to Synaptic Plasticity
Advisor(s):
- Junhyong Kim
Rotations:
- Mitchell Lazar
- Eric Joyce
- Struan Grant
Degree: PhD
Matriculation Year: 2015
Project Title: Improving Resolution of Protein Binding Sites by filtering conserved ultra-high signals in Arabidopsis
Advisor(s):
- Doris Wagner
Rotations:
- Brian Gregory
- Casey Greene
- Lewis Chodosh
- Doris Wagner
Degree: MD/PhD
Matriculation Year: 2017
Project Title: Role of YY1 in chromatin looping throughout the cell cycle
Advisor(s):
- Gerd Blobel
Rotations:
- Jennifer Cremins
- Gerd Blobel
- Hao Wu
Degree: PhD
Matriculation Year: 2017
Project Title: Extracting patterns from large-scale gene expression compendia using deep learning methods
Advisor(s):
- Casey Greene
Rotations:
- Benjamin Voight
- Casey Greene
- Sharon Diskin
Degree: MD/PhD
Matriculation Year: 2015
Advisor(s):
- Yoseph Barash
- Louis Ghanem
Rotations:
- Andy Minn
- Casey Greene
- Yoseph Barash
Degree: PhD
Matriculation Year: 2017
Project Title: Searching for Non-Coding Mechanisms of Disease in Neuroblastoma
Advisor(s):
- John Maris
- Sharon Diskin
Rotations:
- Katherine Nathanson
- Lewis Chodosh
- Sharon Diskin
- John Maris
Degree: PhD
Matriculation Year: 2019
Advisor(s):
- Dokyoon Kim
Rotations:
- Elizabeth Grice
- Daniel Beiting
- Mingyao Li
- Dokyoon Kim
Degree: PhD
Matriculation Year: 2018
Project Title: Prioritizing Complex Disease-related Genes from Genome-wide Association Studies via Regulation-informed Gene-based Analyses
Advisor(s):
- Marylyn Ritchie
Rotations:
- Marylyn Ritchie
Degree: PhD
Matriculation Year: 2019
Advisor(s):
- Junhyong Kim
Rotations:
- Katalin Susztak
- Pablo G. Camara
- Junhyong Kim
Degree: PhD
Matriculation Year: 2015
Advisor(s):
- Sharon Diskin
Rotations:
- Lewis Chodosh
- Sharon Diskin
- Kai Tan
Degree: PhD
Matriculation Year: 2015
Advisor(s):
- Casey Greene
Rotations:
- Jason Moore
- Casey Greene
- Struan Grant
Degree: MD/PhD
Matriculation Year: 2015
Project Title: Investigating the clinical ontologies of loss-of-function and gain-of-function human gene variants
Advisor(s):
- Daniel Rader
- Marylyn Ritchie
Rotations:
- Mitchell Lazar
- Daniel Rader
Degree: PhD
Matriculation Year: 2014
Advisor(s):
- Lewis Chodosh
Rotations:
- Brian Gregory
- Lewis Chodosh
- Yoseph Barash
Degree: PhD
Matriculation Year: 2016
Advisor(s):
- Jason Moore
- Andy Minn
Rotations:
- Christopher Brown
- Katherine Nathanson
- Andy Minn
Degree: PhD
Matriculation Year: 2019
Advisor(s):
- Junhyong Kim
Rotations:
- Junhyong Kim
- Joshua Plotkin
- Pablo G. Camara
Degree: PhD
Matriculation Year: 2018
Project Title: Defining Regulatory Mechanisms in CD8 T-cell Senescence with a Deep Interrogation of LINE-1
Advisor(s):
- Shelley Berger
Rotations:
- Robert Babak Faryabi
- Shelley Berger
- Kai Tan
Degree: MD/PhD
Matriculation Year: 2015
Advisor(s):
- Arjun Raj
Rotations:
- John Maris
- Arjun Raj
Degree: PhD
Matriculation Year: 2013
Project Title: Characterizing the dynamics of RNA-protein interactions in two eukaryotic systems
Advisor(s):
- Brian Gregory
Rotations:
- Brian Gregory
- Lewis Chodosh
- Marcella Devoto
- Nancy Spinner
Degree: PhD
Matriculation Year: 2019
Advisor(s):
- Dokyoon Kim
Rotations:
- Ryan Urbanowicz
- Marylyn Ritchie
- Dokyoon Kim
Degree: PhD
Matriculation Year: 2018
Project Title: Understanding The Heterogeneity of Alternative Splicing in Acute Myeloid Leukemia using Bayesian Machine Learning Models
Advisor(s):
- Yoseph Barash
Rotations:
- Yoseph Barash
- Mingyao Li
- Junhyong Kim
Degree: PhD
Matriculation Year: 2019
Advisor(s):
- Yi Xing
Rotations:
- Yi Xing
- Yoseph Barash
Degree: PhD
Matriculation Year: 2014
Project Title: An integrative approach to identify neuroblastoma immunotherapeutic targets
Advisor(s):
- Benjamin Garcia
- John Maris
- Sharon Diskin
Rotations:
- Sharon Diskin
- John Maris
- Benjamin Garcia
Degree: PhD
Matriculation Year: 2017
Project Title: Multi-Omics Single-cell Analysis in Cancers
Advisor(s):
- Nancy Zhang
Rotations:
- Li-San Wang
- Nancy Zhang
- Lewis Chodosh
Degree: PhD
Matriculation Year: 2019
Advisor(s):
- Dokyoon Kim
- Marylyn Ritchie
Rotations:
- Dokyoon Kim
- Sharon Diskin
- Marylyn Ritchie
Degree: PhD
Matriculation Year: 2018
Project Title: Combining transcriptomics and proteomics data to discover novel protein isoforms and variants
Advisor(s):
- Yi Xing
Rotations:
- Yi Xing
Degree: MD/PhD
Matriculation Year: 2017
Project Title: Developing High-Throughput Bulk and Single-Cell RNA-Sequencing Methods for Targeted Splicing Detection and Quantification
Advisor(s):
- Yoseph Barash
- Peter Choi
Rotations:
- Yoseph Barash
- Peter Choi
Degree: MD/PhD
Matriculation Year: 2013
Advisor(s):
- Gerd Blobel
Rotations:
- Christopher Brown
- Gerd Blobel
- Arjun Raj
Degree: PhD
Matriculation Year: 2018
Advisor(s):
- Marylyn Ritchie
Rotations:
- Marylyn Ritchie
Degree: MD/PhD
Matriculation Year: 2014
Advisor(s):
- Jennifer Cremins
Rotations:
- Benjamin Voight
- Casey Greene
- Jennifer Cremins
Degree: PhD
Matriculation Year: 2016
Project Title: Modeling dynamic regulatory networks during development and differentiation using single cell data.
Advisor(s):
- Kai Tan
- Junhyong Kim
Rotations:
- Yoseph Barash
- Kai Tan
- Junhyong Kim
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