Online Resources for Learning and Image Analysis

  • Bioimage Analysis with Fiji video series by Robert Haase from MPI-CBG. These are amazingly good!
  • Fiji Tutorials YouTube playlist created by Neil Anthony from Emory's Integrated Cellular Imaging (ICI) core facility. Covers all the basics you need to get started with Fiji!
  • Introduction to Bioimage Analysis E-book by Peter Bankhead: a free, interactive textbook covering general image analysis concepts AND a guide to practical analysis using Fiji/ImageJ and Python.
  • Imaris video tutorials
  • Introduction to R: full course from Alex Douglas at the University of Aberdeen
  • Arivis Vision4D tutorials: a large YouTube playlist providing guidance on this powerful rendering and analysis software package, which is available on our Core's Zeiss Lightsheet Z.1 workstation in Anat-Chem.
  • Broad Institute Center for Open Bioimage Analysis Cell Profiler video tutorials
  • All NEUBIAS Academy @Home recordings are posted on their YouTube channel: definitely check them out, as they are wonderful!